Wall clock time and date at job start Mon Mar 30 2020 07:29:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99774 * 2 1 4 4 H 1.48504 * 109.47209 * 269.99978 * 3 2 1 5 5 H 1.48506 * 109.47294 * 29.99826 * 3 2 1 6 6 H 1.48501 * 109.47275 * 149.99729 * 3 2 1 7 7 C 1.37871 * 120.00481 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00205 * 359.72747 * 7 2 1 9 9 C 1.50706 * 120.00436 * 180.02562 * 7 2 1 10 10 C 1.52998 * 109.47348 * 179.72505 * 9 7 2 11 11 C 1.52996 * 109.46929 * 179.97438 * 10 9 7 12 12 C 1.50709 * 109.47079 * 180.02562 * 11 10 9 13 13 O 1.21281 * 119.99753 * 359.97438 * 12 11 10 14 14 N 1.34769 * 120.00152 * 179.97438 * 12 11 10 15 15 C 1.47131 * 125.44424 * 179.97438 * 14 12 11 16 16 C 1.53367 * 106.88389 * 179.47388 * 15 14 12 17 17 H 1.09000 * 107.36660 * 266.98479 * 16 15 14 18 18 C 1.49684 * 113.11349 * 148.35155 * 16 15 14 19 19 C 1.51494 * 115.36434 * 277.41396 * 18 16 15 20 20 C 1.52653 * 110.89979 * 312.97271 * 19 18 16 21 21 C 1.52864 * 108.65175 * 59.79687 * 20 19 18 22 22 C 1.52900 * 109.62507 * 295.05379 * 21 20 19 23 23 H 1.09004 * 111.42226 * 290.31008 * 22 21 20 24 24 C 1.47073 * 125.44375 * 359.69244 * 14 12 11 25 25 H 0.96995 * 120.00207 * 0.02562 * 1 2 3 26 26 H 1.09001 * 109.46564 * 299.72974 * 9 7 2 27 27 H 1.08998 * 109.47012 * 59.72028 * 9 7 2 28 28 H 1.09000 * 109.46986 * 300.00089 * 10 9 7 29 29 H 1.09002 * 109.46857 * 60.00224 * 10 9 7 30 30 H 1.09000 * 109.47441 * 299.99910 * 11 10 9 31 31 H 1.08994 * 109.47235 * 60.00181 * 11 10 9 32 32 H 1.08996 * 109.98321 * 298.83322 * 15 14 12 33 33 H 1.09003 * 109.98030 * 60.11928 * 15 14 12 34 34 H 1.09002 * 108.30155 * 38.94281 * 18 16 15 35 35 H 1.09002 * 108.30382 * 156.07277 * 18 16 15 36 36 H 1.08995 * 109.19310 * 73.34162 * 19 18 16 37 37 H 1.08997 * 109.19209 * 192.61054 * 19 18 16 38 38 H 1.08998 * 109.60884 * 179.54807 * 20 19 18 39 39 H 1.08995 * 109.60748 * 300.05082 * 20 19 18 40 40 H 1.08996 * 109.44588 * 55.10088 * 21 20 19 41 41 H 1.08999 * 109.44476 * 175.03601 * 21 20 19 42 42 H 1.08995 * 110.17598 * 279.52388 * 24 14 12 43 43 H 1.09002 * 110.17291 * 41.32805 * 24 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6528 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1939 0.0005 8 1 1.4647 -2.1293 0.0054 9 6 3.5117 -1.1939 0.0011 10 6 4.0217 -2.6364 0.0086 11 6 5.5517 -2.6362 0.0085 12 6 6.0541 -4.0571 0.0152 13 8 5.2661 -4.9789 0.0201 14 7 7.3792 -4.3033 0.0158 15 6 7.9990 -5.6376 0.0226 16 6 9.5176 -5.4234 0.0071 17 1 9.8382 -5.4416 -1.0345 18 6 10.2696 -6.4951 0.7327 19 6 10.3541 -6.3247 2.2357 20 6 10.7528 -4.8969 2.6003 21 6 9.7025 -3.9378 2.0402 22 6 9.7183 -3.9943 0.5123 23 1 10.6277 -3.5507 0.1069 24 6 8.4366 -3.2811 0.0039 25 1 -0.4850 0.8400 -0.0004 26 1 3.8752 -0.6845 -0.8913 27 1 3.8746 -0.6756 0.8886 28 1 3.6580 -3.1457 0.9010 29 1 3.6588 -3.1546 -0.8790 30 1 5.9150 -2.1270 -0.8841 31 1 5.9150 -2.1179 0.8958 32 1 7.7085 -6.1788 0.9229 33 1 7.6926 -6.1952 -0.8626 34 1 9.7904 -7.4514 0.5230 35 1 11.2847 -6.5288 0.3371 36 1 9.3830 -6.5493 2.6769 37 1 11.0962 -7.0166 2.6336 38 1 10.7994 -4.7958 3.6846 39 1 11.7261 -4.6670 2.1669 40 1 8.7165 -4.2269 2.4038 41 1 9.9267 -2.9227 2.3678 42 1 8.5877 -2.9084 -1.0091 43 1 8.1738 -2.4607 0.6716 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594037922.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:29:33 Heat of formation + Delta-G solvation = -70.059733 kcal Electronic energy + Delta-G solvation = -20341.738295 eV Core-core repulsion = 17385.141170 eV Total energy + Delta-G solvation = -2956.597125 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.76027 -38.65793 -35.44731 -34.28606 -32.34832 -31.99242 -31.12423 -28.62513 -27.40772 -25.09451 -23.30782 -22.38009 -21.93996 -20.13860 -19.19134 -18.83867 -16.82676 -16.56834 -16.48434 -15.59045 -15.21977 -14.81258 -14.59107 -14.19029 -13.87055 -13.70112 -13.43225 -13.02912 -12.74467 -12.57013 -12.32191 -12.16612 -11.98804 -11.88755 -11.54414 -11.51392 -11.43464 -10.93606 -10.76162 -10.65308 -10.42983 -10.28824 -9.96886 -9.80528 -9.66374 -9.38723 -9.10399 -8.60176 -8.48892 -5.98500 -3.96139 2.88838 3.04926 3.33090 3.40026 3.43147 4.09708 4.13805 4.28865 4.49063 4.67858 4.74669 4.79416 4.95685 4.99880 5.07687 5.13475 5.21020 5.34745 5.35843 5.42407 5.50417 5.53140 5.59076 5.60656 5.67127 5.71109 5.72044 5.84084 5.88277 5.94890 6.02754 6.11017 6.14153 6.34477 6.59629 6.73115 6.95268 7.40028 7.48651 7.58206 7.85114 8.39816 8.61902 9.08426 9.63579 11.15286 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.035964 B = 0.003562 C = 0.003397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.373200 B = 7858.953395 C = 8241.510236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.064 3.936 3 Si 0.881 3.119 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.266 1.266 7 C -0.518 4.518 8 H 0.073 0.927 9 C -0.014 4.014 10 C -0.088 4.088 11 C -0.136 4.136 12 C 0.527 3.473 13 O -0.534 6.534 14 N -0.625 5.625 15 C 0.114 3.886 16 C -0.091 4.091 17 H 0.071 0.929 18 C -0.103 4.103 19 C -0.119 4.119 20 C -0.117 4.117 21 C -0.116 4.116 22 C -0.090 4.090 23 H 0.094 0.906 24 C 0.102 3.898 25 H 0.262 0.738 26 H 0.011 0.989 27 H 0.015 0.985 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.061 0.939 36 H 0.060 0.940 37 H 0.062 0.938 38 H 0.062 0.938 39 H 0.062 0.938 40 H 0.067 0.933 41 H 0.065 0.935 42 H 0.066 0.934 43 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.353 -9.161 2.320 28.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.137 4.137 3 Si 0.709 3.291 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.190 1.190 7 C -0.556 4.556 8 H 0.091 0.909 9 C -0.051 4.051 10 C -0.126 4.126 11 C -0.176 4.176 12 C 0.317 3.683 13 O -0.410 6.410 14 N -0.361 5.361 15 C -0.009 4.009 16 C -0.110 4.110 17 H 0.089 0.911 18 C -0.141 4.141 19 C -0.156 4.156 20 C -0.155 4.155 21 C -0.153 4.153 22 C -0.109 4.109 23 H 0.112 0.888 24 C -0.021 4.021 25 H 0.072 0.928 26 H 0.029 0.971 27 H 0.033 0.967 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.105 0.895 31 H 0.105 0.895 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.085 0.915 41 H 0.084 0.916 42 H 0.085 0.915 43 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 26.653 -9.534 2.311 28.401 hybrid contribution 0.409 0.947 -0.106 1.037 sum 27.062 -8.588 2.205 28.477 Atomic orbital electron populations 1.69924 1.06306 1.26772 1.51431 1.25052 0.94743 0.99145 0.94726 0.86760 0.80325 0.83648 0.78414 1.20344 1.21445 1.19043 1.21172 0.89541 0.94554 1.50338 0.90932 1.19604 0.97302 0.92154 0.96072 1.21277 0.89214 0.99544 1.02535 1.21851 1.00509 0.91714 1.03486 1.20894 0.79692 0.92655 0.75023 1.90697 1.54199 1.46948 1.49153 1.48505 1.05355 1.07196 1.75041 1.21797 0.91502 0.85655 1.01922 1.20849 0.94453 0.95000 1.00707 0.91050 1.20375 1.00149 0.98093 0.95467 1.21152 1.01752 0.97024 0.95700 1.21403 0.98751 0.94893 1.00445 1.21572 0.99962 0.99665 0.94118 1.21984 0.97496 0.94997 0.96449 0.88780 1.22379 0.86780 0.91714 1.01240 0.92807 0.97105 0.96680 0.92085 0.92109 0.89512 0.89512 0.91711 0.91650 0.91666 0.91976 0.92073 0.91910 0.91876 0.91934 0.91457 0.91620 0.91525 0.90282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.68 13.96 55.43 0.77 -27.91 16 2 C 0.06 1.92 5.47 -17.82 -0.10 1.82 16 3 Si 0.88 21.97 27.47 -169.99 -4.67 17.30 16 4 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 5 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 6 H -0.27 -6.28 6.53 56.52 0.37 -5.91 16 7 C -0.52 -15.37 9.66 -34.44 -0.33 -15.70 16 8 H 0.07 2.34 7.99 -52.49 -0.42 1.92 16 9 C -0.01 -0.34 4.04 -27.88 -0.11 -0.45 16 10 C -0.09 -1.88 4.44 -26.73 -0.12 -2.00 16 11 C -0.14 -2.24 4.73 -27.88 -0.13 -2.37 16 12 C 0.53 8.88 7.84 -10.98 -0.09 8.79 16 13 O -0.53 -11.21 16.30 5.56 0.09 -11.12 16 14 N -0.62 -8.01 3.30 -171.10 -0.56 -8.58 16 15 C 0.11 1.27 6.22 -3.51 -0.02 1.25 16 16 C -0.09 -0.71 2.52 -92.12 -0.23 -0.94 16 17 H 0.07 0.52 8.13 -51.93 -0.42 0.09 16 18 C -0.10 -0.68 5.19 -29.13 -0.15 -0.83 16 19 C -0.12 -0.79 5.92 -27.67 -0.16 -0.96 16 20 C -0.12 -0.76 5.94 -26.98 -0.16 -0.92 16 21 C -0.12 -0.87 4.90 -26.85 -0.13 -1.00 16 22 C -0.09 -0.66 3.39 -89.54 -0.30 -0.96 16 23 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 24 C 0.10 0.95 5.96 -2.55 -0.02 0.93 16 25 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 26 H 0.01 0.25 7.58 -51.93 -0.39 -0.14 16 27 H 0.01 0.36 7.18 -51.93 -0.37 -0.01 16 28 H 0.06 1.38 8.10 -51.93 -0.42 0.96 16 29 H 0.06 1.38 8.10 -51.93 -0.42 0.96 16 30 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 31 H 0.09 1.27 7.88 -51.93 -0.41 0.87 16 32 H 0.06 0.77 7.97 -51.93 -0.41 0.36 16 33 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.06 0.43 8.00 -51.93 -0.42 0.01 16 35 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 37 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 39 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.07 0.65 7.93 -51.93 -0.41 0.23 16 41 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.08 0.70 7.34 -51.93 -0.38 0.32 16 LS Contribution 333.93 15.07 5.03 5.03 Total: -1.00 -34.06 333.93 -9.27 -43.33 By element: Atomic # 1 Polarization: 3.17 SS G_CDS: -7.88 Total: -4.71 kcal Atomic # 6 Polarization: -11.29 SS G_CDS: -2.06 Total: -13.35 kcal Atomic # 7 Polarization: -36.70 SS G_CDS: 0.21 Total: -36.49 kcal Atomic # 8 Polarization: -11.21 SS G_CDS: 0.09 Total: -11.12 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -4.67 Total: 17.30 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -34.06 -9.27 -43.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594037922.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.729 kcal (2) G-P(sol) polarization free energy of solvation -34.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds