Wall clock time and date at job start Mon Mar 30 2020 07:29:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99774 * 2 1 4 4 H 1.48504 * 109.47209 * 269.99978 * 3 2 1 5 5 H 1.48506 * 109.47294 * 29.99826 * 3 2 1 6 6 H 1.48501 * 109.47275 * 149.99729 * 3 2 1 7 7 C 1.37871 * 120.00481 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00205 * 359.72747 * 7 2 1 9 9 C 1.50706 * 120.00436 * 180.02562 * 7 2 1 10 10 C 1.52998 * 109.47348 * 179.72505 * 9 7 2 11 11 C 1.52996 * 109.46929 * 179.97438 * 10 9 7 12 12 C 1.50709 * 109.47079 * 180.02562 * 11 10 9 13 13 O 1.21281 * 119.99753 * 359.97438 * 12 11 10 14 14 N 1.34769 * 120.00152 * 179.97438 * 12 11 10 15 15 C 1.47131 * 125.44424 * 179.97438 * 14 12 11 16 16 C 1.53367 * 106.88389 * 179.47388 * 15 14 12 17 17 H 1.09000 * 107.36660 * 266.98479 * 16 15 14 18 18 C 1.49684 * 113.11349 * 148.35155 * 16 15 14 19 19 C 1.51494 * 115.36434 * 277.41396 * 18 16 15 20 20 C 1.52653 * 110.89979 * 312.97271 * 19 18 16 21 21 C 1.52864 * 108.65175 * 59.79687 * 20 19 18 22 22 C 1.52900 * 109.62507 * 295.05379 * 21 20 19 23 23 H 1.09004 * 111.42226 * 290.31008 * 22 21 20 24 24 C 1.47073 * 125.44375 * 359.69244 * 14 12 11 25 25 H 0.96995 * 120.00207 * 0.02562 * 1 2 3 26 26 H 1.09001 * 109.46564 * 299.72974 * 9 7 2 27 27 H 1.08998 * 109.47012 * 59.72028 * 9 7 2 28 28 H 1.09000 * 109.46986 * 300.00089 * 10 9 7 29 29 H 1.09002 * 109.46857 * 60.00224 * 10 9 7 30 30 H 1.09000 * 109.47441 * 299.99910 * 11 10 9 31 31 H 1.08994 * 109.47235 * 60.00181 * 11 10 9 32 32 H 1.08996 * 109.98321 * 298.83322 * 15 14 12 33 33 H 1.09003 * 109.98030 * 60.11928 * 15 14 12 34 34 H 1.09002 * 108.30155 * 38.94281 * 18 16 15 35 35 H 1.09002 * 108.30382 * 156.07277 * 18 16 15 36 36 H 1.08995 * 109.19310 * 73.34162 * 19 18 16 37 37 H 1.08997 * 109.19209 * 192.61054 * 19 18 16 38 38 H 1.08998 * 109.60884 * 179.54807 * 20 19 18 39 39 H 1.08995 * 109.60748 * 300.05082 * 20 19 18 40 40 H 1.08996 * 109.44588 * 55.10088 * 21 20 19 41 41 H 1.08999 * 109.44476 * 175.03601 * 21 20 19 42 42 H 1.08995 * 110.17598 * 279.52388 * 24 14 12 43 43 H 1.09002 * 110.17291 * 41.32805 * 24 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6528 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1939 0.0005 8 1 1.4647 -2.1293 0.0054 9 6 3.5117 -1.1939 0.0011 10 6 4.0217 -2.6364 0.0086 11 6 5.5517 -2.6362 0.0085 12 6 6.0541 -4.0571 0.0152 13 8 5.2661 -4.9789 0.0201 14 7 7.3792 -4.3033 0.0158 15 6 7.9990 -5.6376 0.0226 16 6 9.5176 -5.4234 0.0071 17 1 9.8382 -5.4416 -1.0345 18 6 10.2696 -6.4951 0.7327 19 6 10.3541 -6.3247 2.2357 20 6 10.7528 -4.8969 2.6003 21 6 9.7025 -3.9378 2.0402 22 6 9.7183 -3.9943 0.5123 23 1 10.6277 -3.5507 0.1069 24 6 8.4366 -3.2811 0.0039 25 1 -0.4850 0.8400 -0.0004 26 1 3.8752 -0.6845 -0.8913 27 1 3.8746 -0.6756 0.8886 28 1 3.6580 -3.1457 0.9010 29 1 3.6588 -3.1546 -0.8790 30 1 5.9150 -2.1270 -0.8841 31 1 5.9150 -2.1179 0.8958 32 1 7.7085 -6.1788 0.9229 33 1 7.6926 -6.1952 -0.8626 34 1 9.7904 -7.4514 0.5230 35 1 11.2847 -6.5288 0.3371 36 1 9.3830 -6.5493 2.6769 37 1 11.0962 -7.0166 2.6336 38 1 10.7994 -4.7958 3.6846 39 1 11.7261 -4.6670 2.1669 40 1 8.7165 -4.2269 2.4038 41 1 9.9267 -2.9227 2.3678 42 1 8.5877 -2.9084 -1.0091 43 1 8.1738 -2.4607 0.6716 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594037922.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:29:32 Heat of formation + Delta-G solvation = -91.024981 kcal Electronic energy + Delta-G solvation = -20342.647416 eV Core-core repulsion = 17385.141170 eV Total energy + Delta-G solvation = -2957.506246 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.62979 -39.78377 -36.34340 -36.12939 -34.16678 -32.86543 -32.03274 -30.22571 -28.31362 -26.32993 -24.73748 -23.13072 -22.55973 -21.95768 -20.29123 -19.59545 -18.81963 -17.91581 -17.41625 -16.63210 -16.46211 -16.03124 -15.66120 -15.33346 -14.88941 -14.71731 -14.69123 -14.24386 -14.03557 -13.81562 -13.64051 -13.25644 -13.00242 -12.79341 -12.67305 -12.57181 -12.44852 -12.13060 -12.04220 -11.79455 -11.74037 -11.52180 -11.34159 -11.22208 -10.98346 -10.89673 -10.76964 -10.75526 -9.65495 -8.28142 -6.34195 1.38290 1.42248 1.54392 1.59800 1.99248 2.39128 3.06772 3.40631 3.48179 3.70600 3.81673 4.09327 4.13591 4.17604 4.20057 4.23206 4.36423 4.42380 4.57232 4.59760 4.62783 4.73307 4.78682 4.84345 4.88362 4.92014 4.93154 5.01648 5.05758 5.10076 5.16821 5.26804 5.31792 5.34805 5.44864 5.50659 5.53294 5.57689 5.61206 5.66895 6.29713 6.47522 6.74299 7.14735 7.30221 8.89706 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.035964 B = 0.003562 C = 0.003397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.373200 B = 7858.953395 C = 8241.510236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.958 5.958 2 C -0.004 4.004 3 Si 0.963 3.037 4 H -0.263 1.263 5 H -0.285 1.285 6 H -0.235 1.235 7 C -0.542 4.542 8 H 0.018 0.982 9 C -0.007 4.007 10 C -0.080 4.080 11 C -0.123 4.123 12 C 0.521 3.479 13 O -0.593 6.593 14 N -0.618 5.618 15 C 0.108 3.892 16 C -0.082 4.082 17 H 0.085 0.915 18 C -0.102 4.102 19 C -0.120 4.120 20 C -0.115 4.115 21 C -0.116 4.116 22 C -0.081 4.081 23 H 0.125 0.875 24 C 0.091 3.909 25 H 0.267 0.733 26 H 0.030 0.970 27 H 0.031 0.969 28 H 0.034 0.966 29 H 0.035 0.965 30 H 0.115 0.885 31 H 0.113 0.887 32 H 0.047 0.953 33 H 0.054 0.946 34 H 0.060 0.940 35 H 0.083 0.917 36 H 0.039 0.961 37 H 0.073 0.927 38 H 0.062 0.938 39 H 0.079 0.921 40 H 0.038 0.962 41 H 0.077 0.923 42 H 0.085 0.915 43 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 31.905 -6.950 2.057 32.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.199 4.199 3 Si 0.785 3.215 4 H -0.188 1.188 5 H -0.211 1.211 6 H -0.158 1.158 7 C -0.579 4.579 8 H 0.036 0.964 9 C -0.044 4.044 10 C -0.119 4.119 11 C -0.162 4.162 12 C 0.312 3.688 13 O -0.473 6.473 14 N -0.351 5.351 15 C -0.015 4.015 16 C -0.101 4.101 17 H 0.103 0.897 18 C -0.140 4.140 19 C -0.158 4.158 20 C -0.152 4.152 21 C -0.154 4.154 22 C -0.099 4.099 23 H 0.143 0.857 24 C -0.031 4.031 25 H 0.075 0.925 26 H 0.049 0.951 27 H 0.049 0.951 28 H 0.053 0.947 29 H 0.054 0.946 30 H 0.133 0.867 31 H 0.131 0.869 32 H 0.066 0.934 33 H 0.073 0.927 34 H 0.079 0.921 35 H 0.101 0.899 36 H 0.058 0.942 37 H 0.092 0.908 38 H 0.081 0.919 39 H 0.098 0.902 40 H 0.057 0.943 41 H 0.095 0.905 42 H 0.104 0.896 43 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 31.274 -7.333 2.050 32.188 hybrid contribution -1.073 0.133 -0.008 1.082 sum 30.201 -7.200 2.041 31.114 Atomic orbital electron populations 1.70107 1.08726 1.28345 1.52647 1.26215 0.95766 1.04191 0.93773 0.85479 0.79662 0.76915 0.79469 1.18781 1.21115 1.15824 1.21552 0.92679 0.92865 1.50846 0.96365 1.19530 0.93498 0.94047 0.97369 1.21050 0.93296 0.97354 1.00171 1.21681 0.96289 0.92182 1.06096 1.20942 0.80802 0.92218 0.74872 1.90675 1.56080 1.48338 1.52242 1.48500 1.04826 1.09105 1.72668 1.21957 0.94165 0.84773 1.00606 1.20848 0.91444 0.95903 1.01918 0.89652 1.20378 1.00975 0.97404 0.95250 1.21170 1.00998 0.97770 0.95833 1.21394 0.99096 0.94141 1.00564 1.21573 0.98813 1.00528 0.94465 1.22045 0.97628 0.94167 0.96100 0.85678 1.22757 0.86342 0.91187 1.02797 0.92453 0.95140 0.95072 0.94695 0.94598 0.86651 0.86852 0.93406 0.92747 0.92147 0.89881 0.94178 0.90796 0.91921 0.90234 0.94286 0.90485 0.89643 0.89340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -62.55 13.96 21.45 0.30 -62.25 16 2 C 0.00 -0.22 5.47 84.65 0.46 0.24 16 3 Si 0.96 44.26 27.47 68.60 1.88 46.14 16 4 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 5 H -0.29 -12.90 7.11 99.48 0.71 -12.19 16 6 H -0.24 -9.62 6.53 99.48 0.65 -8.97 16 7 C -0.54 -33.19 9.66 25.60 0.25 -32.94 16 8 H 0.02 1.25 7.99 -2.91 -0.02 1.23 16 9 C -0.01 -0.34 4.04 29.85 0.12 -0.22 16 10 C -0.08 -3.52 4.44 30.59 0.14 -3.39 16 11 C -0.12 -3.84 4.73 29.85 0.14 -3.70 16 12 C 0.52 17.54 7.84 87.66 0.69 18.23 16 13 O -0.59 -26.15 16.30 -3.03 -0.05 -26.20 16 14 N -0.62 -15.12 3.30 -813.63 -2.69 -17.81 16 15 C 0.11 2.36 6.22 86.38 0.54 2.90 16 16 C -0.08 -1.06 2.52 -11.77 -0.03 -1.09 16 17 H 0.09 0.92 8.13 -2.39 -0.02 0.90 16 18 C -0.10 -1.10 5.19 29.04 0.15 -0.95 16 19 C -0.12 -1.40 5.92 29.99 0.18 -1.22 16 20 C -0.11 -1.17 5.94 30.43 0.18 -0.99 16 21 C -0.12 -1.44 4.90 30.52 0.15 -1.29 16 22 C -0.08 -0.87 3.39 -10.09 -0.03 -0.91 16 23 H 0.13 0.72 8.14 -2.38 -0.02 0.70 16 24 C 0.09 1.37 5.96 87.04 0.52 1.89 16 25 H 0.27 16.08 8.31 -92.71 -0.77 15.31 16 26 H 0.03 1.35 7.58 -2.39 -0.02 1.33 16 27 H 0.03 1.40 7.18 -2.39 -0.02 1.38 16 28 H 0.03 1.66 8.10 -2.39 -0.02 1.64 16 29 H 0.04 1.70 8.10 -2.39 -0.02 1.68 16 30 H 0.12 2.97 8.14 -2.39 -0.02 2.95 16 31 H 0.11 2.95 7.88 -2.39 -0.02 2.94 16 32 H 0.05 1.20 7.97 -2.39 -0.02 1.18 16 33 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.06 0.72 8.00 -2.39 -0.02 0.70 16 35 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 36 H 0.04 0.62 8.14 -2.39 -0.02 0.60 16 37 H 0.07 0.69 8.14 -2.39 -0.02 0.68 16 38 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 39 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 40 H 0.04 0.70 7.93 -2.39 -0.02 0.69 16 41 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 42 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 43 H 0.09 1.21 7.34 -2.39 -0.02 1.19 16 Total: -1.00 -79.27 333.93 3.78 -75.48 By element: Atomic # 1 Polarization: 7.17 SS G_CDS: 0.89 Total: 8.06 kcal Atomic # 6 Polarization: -26.88 SS G_CDS: 3.45 Total: -23.44 kcal Atomic # 7 Polarization: -77.67 SS G_CDS: -2.39 Total: -80.06 kcal Atomic # 8 Polarization: -26.15 SS G_CDS: -0.05 Total: -26.20 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 1.88 Total: 46.14 kcal Total: -79.27 3.78 -75.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594037922.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.540 kcal (2) G-P(sol) polarization free energy of solvation -79.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds