Wall clock time and date at job start Mon Mar 30 2020 06:51:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86806 * 120.00190 * 2 1 4 4 H 1.48500 * 109.46727 * 270.00115 * 3 2 1 5 5 H 1.48495 * 109.46776 * 29.99584 * 3 2 1 6 6 H 1.48495 * 109.47079 * 149.99619 * 3 2 1 7 7 C 1.37883 * 120.00262 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99334 * 0.02562 * 7 2 1 9 9 C 1.50696 * 120.00095 * 179.97438 * 7 2 1 10 10 C 1.53006 * 109.46912 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47034 * 180.02562 * 10 9 7 12 12 C 1.50703 * 109.46841 * 180.02562 * 11 10 9 13 13 O 1.21276 * 120.00123 * 341.29069 * 12 11 10 14 14 N 1.34780 * 119.99497 * 161.29374 * 12 11 10 15 15 C 1.46500 * 119.99646 * 178.57478 * 14 12 11 16 16 C 1.53777 * 113.61642 * 44.32629 * 15 14 12 17 17 C 1.53949 * 87.02196 * 220.05236 * 16 15 14 18 18 C 1.53776 * 87.11346 * 25.36564 * 17 16 15 19 19 C 1.46496 * 120.00021 * 358.56786 * 14 12 11 20 20 C 1.53778 * 113.61677 * 37.35120 * 19 14 12 21 21 C 1.53949 * 87.02212 * 220.04438 * 20 19 14 22 22 C 1.53769 * 113.61939 * 299.73967 * 19 14 12 23 23 H 0.96995 * 119.99610 * 0.02562 * 1 2 3 24 24 H 1.09002 * 109.47176 * 60.00737 * 9 7 2 25 25 H 1.08998 * 109.47549 * 300.00150 * 9 7 2 26 26 H 1.09002 * 109.46678 * 60.00334 * 10 9 7 27 27 H 1.08998 * 109.47057 * 300.00354 * 10 9 7 28 28 H 1.08996 * 109.46863 * 300.00239 * 11 10 9 29 29 H 1.08991 * 109.46860 * 59.99892 * 11 10 9 30 30 H 1.08997 * 112.85031 * 175.52839 * 15 14 12 31 31 H 1.09006 * 113.61930 * 334.57005 * 16 15 14 32 32 H 1.09003 * 113.61437 * 105.47393 * 16 15 14 33 33 H 1.09001 * 113.53881 * 270.81495 * 17 16 15 34 34 H 1.09003 * 113.74421 * 139.94684 * 17 16 15 35 35 H 1.09000 * 113.61641 * 220.09267 * 18 17 16 36 36 H 1.08999 * 113.61899 * 89.18441 * 18 17 16 37 37 H 1.09002 * 112.84390 * 168.54166 * 19 14 12 38 38 H 1.09004 * 113.61508 * 334.56675 * 20 19 14 39 39 H 1.09000 * 113.61531 * 105.46570 * 20 19 14 40 40 H 1.09007 * 113.53485 * 270.81342 * 21 20 19 41 41 H 1.08998 * 113.74638 * 139.93889 * 21 20 19 42 42 H 1.09003 * 113.61898 * 254.53548 * 22 19 14 43 43 H 1.09005 * 113.61665 * 25.43174 * 22 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5116 -1.1940 0.0000 10 6 4.0216 -2.6366 0.0001 11 6 5.5516 -2.6366 0.0001 12 6 6.0539 -4.0574 -0.0004 13 8 5.3181 -4.9608 0.3361 14 7 7.3209 -4.3241 -0.3748 15 6 7.8188 -5.7015 -0.3455 16 6 6.8304 -6.7264 -0.9266 17 6 7.2511 -7.6626 0.2209 18 6 7.6247 -6.3979 1.0119 19 6 8.2000 -3.2365 -0.8112 20 6 8.0037 -1.9313 -0.0220 21 6 8.1662 -1.1909 -1.3620 22 6 7.6786 -2.4800 -2.0443 23 1 -0.4849 0.8400 -0.0004 24 1 3.8752 -0.6797 0.8895 25 1 3.8746 -0.6808 -0.8905 26 1 3.6579 -3.1505 -0.8897 27 1 3.6585 -3.1502 0.8903 28 1 5.9149 -2.1228 -0.8898 29 1 5.9148 -2.1227 0.8900 30 1 8.8291 -5.7950 -0.7436 31 1 5.7891 -6.4087 -0.8714 32 1 7.1108 -7.0918 -1.9145 33 1 8.1059 -8.2934 -0.0231 34 1 6.4232 -8.2217 0.6570 35 1 8.5454 -6.4985 1.5866 36 1 6.8011 -5.9902 1.5980 37 1 9.2426 -3.5431 -0.8956 38 1 7.0102 -1.8305 0.4149 39 1 8.8031 -1.7274 0.6903 40 1 9.2000 -0.9370 -1.5964 41 1 7.4854 -0.3484 -1.4832 42 1 8.2159 -2.7183 -2.9623 43 1 6.5960 -2.5294 -2.1614 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594039285.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:51:50 Heat of formation + Delta-G solvation = 32.632331 kcal Electronic energy + Delta-G solvation = -21080.725320 eV Core-core repulsion = 18128.581258 eV Total energy + Delta-G solvation = -2952.144063 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.22824 -38.67266 -37.35673 -34.28066 -33.07841 -32.06875 -28.81524 -25.90667 -25.56418 -25.48715 -25.06629 -23.25937 -20.97733 -20.15191 -19.14996 -18.96882 -17.09507 -16.52807 -15.98657 -15.63701 -15.09227 -15.00771 -14.41501 -14.13315 -14.00062 -13.43000 -13.02698 -12.80753 -12.79242 -12.59122 -12.20676 -12.01639 -11.88167 -11.61451 -11.32531 -11.13746 -10.91174 -10.77662 -10.61306 -10.43182 -10.26096 -10.04872 -9.91926 -9.71765 -9.53269 -9.19666 -9.05022 -8.50616 -8.49091 -6.00190 -3.97918 2.79248 3.04031 3.31592 3.39031 3.41650 4.40400 4.45418 4.47468 4.51883 4.66916 4.69078 4.80169 4.82198 4.94041 4.98783 5.23315 5.32560 5.35536 5.37783 5.49308 5.61148 5.66462 5.74219 5.81892 5.83567 5.89254 5.91375 5.98032 6.05415 6.09451 6.16275 6.29195 6.42312 6.54674 6.67974 6.85704 6.92256 7.36588 7.45465 7.51086 7.83192 8.40988 8.59810 9.06590 9.61915 11.13566 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.022700 B = 0.005147 C = 0.004400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.160845 B = 5439.019344 C = 6362.572979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.065 3.935 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.265 1.265 7 C -0.518 4.518 8 H 0.072 0.928 9 C -0.014 4.014 10 C -0.092 4.092 11 C -0.165 4.165 12 C 0.520 3.480 13 O -0.526 6.526 14 N -0.601 5.601 15 C 0.121 3.879 16 C -0.156 4.156 17 C -0.136 4.136 18 C -0.149 4.149 19 C 0.122 3.878 20 C -0.210 4.210 21 C -0.139 4.139 22 C -0.165 4.165 23 H 0.262 0.738 24 H 0.015 0.985 25 H 0.010 0.990 26 H 0.056 0.944 27 H 0.064 0.936 28 H 0.102 0.898 29 H 0.106 0.894 30 H 0.102 0.898 31 H 0.113 0.887 32 H 0.059 0.941 33 H 0.073 0.927 34 H 0.070 0.930 35 H 0.060 0.940 36 H 0.096 0.904 37 H 0.107 0.893 38 H 0.138 0.862 39 H 0.068 0.932 40 H 0.079 0.921 41 H 0.077 0.923 42 H 0.070 0.930 43 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.974 -7.858 -2.156 23.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.136 4.136 3 Si 0.707 3.293 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.190 1.190 7 C -0.556 4.556 8 H 0.090 0.910 9 C -0.051 4.051 10 C -0.130 4.130 11 C -0.203 4.203 12 C 0.310 3.690 13 O -0.403 6.403 14 N -0.332 5.332 15 C 0.017 3.983 16 C -0.195 4.195 17 C -0.174 4.174 18 C -0.187 4.187 19 C 0.018 3.982 20 C -0.247 4.247 21 C -0.177 4.177 22 C -0.203 4.203 23 H 0.072 0.928 24 H 0.033 0.967 25 H 0.028 0.972 26 H 0.075 0.925 27 H 0.083 0.917 28 H 0.120 0.880 29 H 0.123 0.877 30 H 0.120 0.880 31 H 0.131 0.869 32 H 0.077 0.923 33 H 0.092 0.908 34 H 0.089 0.911 35 H 0.079 0.921 36 H 0.115 0.885 37 H 0.124 0.876 38 H 0.154 0.846 39 H 0.086 0.914 40 H 0.098 0.902 41 H 0.096 0.904 42 H 0.089 0.911 43 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 21.426 -8.234 -1.972 23.038 hybrid contribution 0.653 0.969 -0.123 1.175 sum 22.078 -7.264 -2.095 23.337 Atomic orbital electron populations 1.69922 1.06317 1.26780 1.51357 1.25047 0.94722 0.99115 0.94698 0.86780 0.80376 0.83711 0.78420 1.20338 1.21448 1.18998 1.21155 0.89513 0.94517 1.50425 0.90968 1.19596 0.97336 0.92107 0.96046 1.21371 0.89480 0.99671 1.02488 1.22848 1.00359 0.92922 1.04161 1.20931 0.80309 0.92089 0.75681 1.90597 1.55571 1.47445 1.46642 1.48052 1.12148 1.06869 1.66150 1.22629 0.97772 0.80225 0.97649 1.23548 1.02964 0.95686 0.97257 1.22610 1.01000 0.96086 0.97693 1.23336 1.02023 0.96544 0.96829 1.22653 0.94405 0.85746 0.95415 1.24857 1.07069 0.94843 0.97917 1.22685 1.01625 0.97169 0.96181 1.23701 1.02618 0.96285 0.97677 0.92800 0.96669 0.97166 0.92507 0.91701 0.88049 0.87689 0.87962 0.86850 0.92264 0.90802 0.91084 0.92088 0.88544 0.87551 0.84550 0.91353 0.90239 0.90411 0.91137 0.88415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.34 13.96 55.43 0.77 -27.57 16 2 C 0.06 1.92 5.47 -17.82 -0.10 1.82 16 3 Si 0.88 21.66 27.47 -169.99 -4.67 16.99 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.27 -6.18 6.54 56.52 0.37 -5.81 16 7 C -0.52 -15.06 9.66 -34.44 -0.33 -15.39 16 8 H 0.07 2.29 7.99 -52.49 -0.42 1.87 16 9 C -0.01 -0.32 4.04 -27.88 -0.11 -0.43 16 10 C -0.09 -1.89 4.61 -26.73 -0.12 -2.02 16 11 C -0.16 -2.59 3.32 -27.88 -0.09 -2.68 16 12 C 0.52 8.16 6.63 -10.98 -0.07 8.09 16 13 O -0.53 -9.85 11.71 5.56 0.07 -9.78 16 14 N -0.60 -7.46 2.97 -156.76 -0.47 -7.92 16 15 C 0.12 1.36 4.42 -67.12 -0.30 1.06 16 16 C -0.16 -1.92 7.38 -25.83 -0.19 -2.11 16 17 C -0.14 -1.46 8.09 -25.83 -0.21 -1.67 16 18 C -0.15 -1.73 7.44 -25.92 -0.19 -1.92 16 19 C 0.12 1.21 4.41 -67.13 -0.30 0.92 16 20 C -0.21 -2.12 7.13 -25.83 -0.18 -2.30 16 21 C -0.14 -1.29 7.74 -25.83 -0.20 -1.49 16 22 C -0.16 -1.65 7.23 -25.92 -0.19 -1.84 16 23 H 0.26 7.66 8.31 -40.82 -0.34 7.33 16 24 H 0.02 0.35 7.20 -51.93 -0.37 -0.02 16 25 H 0.01 0.23 7.57 -51.93 -0.39 -0.16 16 26 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 27 H 0.06 1.43 7.91 -51.93 -0.41 1.02 16 28 H 0.10 1.44 3.49 -51.93 -0.18 1.26 16 29 H 0.11 1.52 6.00 -51.93 -0.31 1.21 16 30 H 0.10 0.90 7.93 -51.93 -0.41 0.49 16 31 H 0.11 1.78 5.54 -51.93 -0.29 1.49 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.10 1.40 6.39 -51.93 -0.33 1.07 16 37 H 0.11 0.84 7.94 -51.93 -0.41 0.43 16 38 H 0.14 1.61 2.61 -68.69 -0.18 1.43 16 39 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 40 H 0.08 0.61 8.14 -51.92 -0.42 0.19 16 41 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.10 1.17 5.65 -51.93 -0.29 0.88 16 LS Contribution 322.23 15.07 4.86 4.86 Total: -1.00 -32.12 322.23 -9.01 -41.12 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: -6.98 Total: 2.28 kcal Atomic # 6 Polarization: -17.38 SS G_CDS: -2.59 Total: -19.97 kcal Atomic # 7 Polarization: -35.80 SS G_CDS: 0.31 Total: -35.49 kcal Atomic # 8 Polarization: -9.85 SS G_CDS: 0.07 Total: -9.78 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.67 Total: 16.99 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -32.12 -9.01 -41.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594039285.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.755 kcal (2) G-P(sol) polarization free energy of solvation -32.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.123 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds