Wall clock time and date at job start Mon Mar 30 2020 06:51:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86806 * 120.00190 * 2 1 4 4 H 1.48500 * 109.46727 * 270.00115 * 3 2 1 5 5 H 1.48495 * 109.46776 * 29.99584 * 3 2 1 6 6 H 1.48495 * 109.47079 * 149.99619 * 3 2 1 7 7 C 1.37883 * 120.00262 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99334 * 0.02562 * 7 2 1 9 9 C 1.50696 * 120.00095 * 179.97438 * 7 2 1 10 10 C 1.53006 * 109.46912 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47034 * 180.02562 * 10 9 7 12 12 C 1.50703 * 109.46841 * 180.02562 * 11 10 9 13 13 O 1.21276 * 120.00123 * 341.29069 * 12 11 10 14 14 N 1.34780 * 119.99497 * 161.29374 * 12 11 10 15 15 C 1.46500 * 119.99646 * 178.57478 * 14 12 11 16 16 C 1.53777 * 113.61642 * 44.32629 * 15 14 12 17 17 C 1.53949 * 87.02196 * 220.05236 * 16 15 14 18 18 C 1.53776 * 87.11346 * 25.36564 * 17 16 15 19 19 C 1.46496 * 120.00021 * 358.56786 * 14 12 11 20 20 C 1.53778 * 113.61677 * 37.35120 * 19 14 12 21 21 C 1.53949 * 87.02212 * 220.04438 * 20 19 14 22 22 C 1.53769 * 113.61939 * 299.73967 * 19 14 12 23 23 H 0.96995 * 119.99610 * 0.02562 * 1 2 3 24 24 H 1.09002 * 109.47176 * 60.00737 * 9 7 2 25 25 H 1.08998 * 109.47549 * 300.00150 * 9 7 2 26 26 H 1.09002 * 109.46678 * 60.00334 * 10 9 7 27 27 H 1.08998 * 109.47057 * 300.00354 * 10 9 7 28 28 H 1.08996 * 109.46863 * 300.00239 * 11 10 9 29 29 H 1.08991 * 109.46860 * 59.99892 * 11 10 9 30 30 H 1.08997 * 112.85031 * 175.52839 * 15 14 12 31 31 H 1.09006 * 113.61930 * 334.57005 * 16 15 14 32 32 H 1.09003 * 113.61437 * 105.47393 * 16 15 14 33 33 H 1.09001 * 113.53881 * 270.81495 * 17 16 15 34 34 H 1.09003 * 113.74421 * 139.94684 * 17 16 15 35 35 H 1.09000 * 113.61641 * 220.09267 * 18 17 16 36 36 H 1.08999 * 113.61899 * 89.18441 * 18 17 16 37 37 H 1.09002 * 112.84390 * 168.54166 * 19 14 12 38 38 H 1.09004 * 113.61508 * 334.56675 * 20 19 14 39 39 H 1.09000 * 113.61531 * 105.46570 * 20 19 14 40 40 H 1.09007 * 113.53485 * 270.81342 * 21 20 19 41 41 H 1.08998 * 113.74638 * 139.93889 * 21 20 19 42 42 H 1.09003 * 113.61898 * 254.53548 * 22 19 14 43 43 H 1.09005 * 113.61665 * 25.43174 * 22 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5116 -1.1940 0.0000 10 6 4.0216 -2.6366 0.0001 11 6 5.5516 -2.6366 0.0001 12 6 6.0539 -4.0574 -0.0004 13 8 5.3181 -4.9608 0.3361 14 7 7.3209 -4.3241 -0.3748 15 6 7.8188 -5.7015 -0.3455 16 6 6.8304 -6.7264 -0.9266 17 6 7.2511 -7.6626 0.2209 18 6 7.6247 -6.3979 1.0119 19 6 8.2000 -3.2365 -0.8112 20 6 8.0037 -1.9313 -0.0220 21 6 8.1662 -1.1909 -1.3620 22 6 7.6786 -2.4800 -2.0443 23 1 -0.4849 0.8400 -0.0004 24 1 3.8752 -0.6797 0.8895 25 1 3.8746 -0.6808 -0.8905 26 1 3.6579 -3.1505 -0.8897 27 1 3.6585 -3.1502 0.8903 28 1 5.9149 -2.1228 -0.8898 29 1 5.9148 -2.1227 0.8900 30 1 8.8291 -5.7950 -0.7436 31 1 5.7891 -6.4087 -0.8714 32 1 7.1108 -7.0918 -1.9145 33 1 8.1059 -8.2934 -0.0231 34 1 6.4232 -8.2217 0.6570 35 1 8.5454 -6.4985 1.5866 36 1 6.8011 -5.9902 1.5980 37 1 9.2426 -3.5431 -0.8956 38 1 7.0102 -1.8305 0.4149 39 1 8.8031 -1.7274 0.6903 40 1 9.2000 -0.9370 -1.5964 41 1 7.4854 -0.3484 -1.4832 42 1 8.2159 -2.7183 -2.9623 43 1 6.5960 -2.5294 -2.1614 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594039285.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:51:49 Heat of formation + Delta-G solvation = 13.591081 kcal Electronic energy + Delta-G solvation = -21081.551011 eV Core-core repulsion = 18128.581258 eV Total energy + Delta-G solvation = -2952.969753 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.24124 -39.54405 -38.48723 -36.09883 -34.13148 -34.04989 -30.53866 -26.96371 -26.56116 -26.38298 -26.11151 -24.66435 -22.44455 -21.39648 -20.24929 -19.93332 -18.95379 -17.83754 -17.00832 -16.86065 -16.33251 -15.97277 -15.83081 -15.44005 -15.31066 -14.76141 -14.45979 -14.29881 -13.88778 -13.76314 -13.51468 -13.08992 -13.01898 -12.83364 -12.74744 -12.39231 -12.12585 -11.95164 -11.76886 -11.64653 -11.55250 -11.41730 -11.37672 -11.22333 -11.09477 -10.75437 -10.71448 -10.36809 -9.49210 -8.28172 -6.33879 1.37662 1.41388 1.53449 1.59517 2.04521 2.38651 3.06900 3.49957 3.63156 3.71675 3.82936 3.83570 3.95376 4.00053 4.02166 4.05063 4.09990 4.17376 4.47858 4.62611 4.65678 4.74847 4.79035 4.85444 4.93017 4.94450 4.99054 5.01362 5.03744 5.10890 5.14588 5.18166 5.22998 5.26500 5.38814 5.50739 5.57505 5.58974 5.67087 5.92800 6.29612 6.45914 6.74382 7.25498 7.30647 8.89565 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.022700 B = 0.005147 C = 0.004400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.160845 B = 5439.019344 C = 6362.572979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.957 5.957 2 C -0.001 4.001 3 Si 0.959 3.041 4 H -0.262 1.262 5 H -0.286 1.286 6 H -0.237 1.237 7 C -0.539 4.539 8 H 0.019 0.981 9 C -0.007 4.007 10 C -0.084 4.084 11 C -0.153 4.153 12 C 0.515 3.485 13 O -0.568 6.568 14 N -0.592 5.592 15 C 0.123 3.877 16 C -0.166 4.166 17 C -0.128 4.128 18 C -0.151 4.151 19 C 0.119 3.881 20 C -0.212 4.212 21 C -0.131 4.131 22 C -0.169 4.169 23 H 0.266 0.734 24 H 0.028 0.972 25 H 0.029 0.971 26 H 0.034 0.966 27 H 0.037 0.963 28 H 0.123 0.877 29 H 0.124 0.876 30 H 0.143 0.857 31 H 0.071 0.929 32 H 0.074 0.926 33 H 0.106 0.894 34 H 0.054 0.946 35 H 0.084 0.916 36 H 0.058 0.942 37 H 0.141 0.859 38 H 0.116 0.884 39 H 0.084 0.916 40 H 0.104 0.896 41 H 0.069 0.931 42 H 0.087 0.913 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.748 -6.454 -2.775 27.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.197 4.197 3 Si 0.781 3.219 4 H -0.187 1.187 5 H -0.212 1.212 6 H -0.159 1.159 7 C -0.577 4.577 8 H 0.037 0.963 9 C -0.044 4.044 10 C -0.122 4.122 11 C -0.191 4.191 12 C 0.305 3.695 13 O -0.448 6.448 14 N -0.322 5.322 15 C 0.020 3.980 16 C -0.204 4.204 17 C -0.166 4.166 18 C -0.189 4.189 19 C 0.016 3.984 20 C -0.249 4.249 21 C -0.168 4.168 22 C -0.207 4.207 23 H 0.075 0.925 24 H 0.047 0.953 25 H 0.047 0.953 26 H 0.053 0.947 27 H 0.056 0.944 28 H 0.140 0.860 29 H 0.142 0.858 30 H 0.161 0.839 31 H 0.090 0.910 32 H 0.093 0.907 33 H 0.124 0.876 34 H 0.073 0.927 35 H 0.103 0.897 36 H 0.077 0.923 37 H 0.159 0.841 38 H 0.133 0.867 39 H 0.103 0.897 40 H 0.122 0.878 41 H 0.088 0.912 42 H 0.106 0.894 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 26.244 -6.841 -2.602 27.245 hybrid contribution -0.911 0.420 0.049 1.004 sum 25.333 -6.421 -2.553 26.259 Atomic orbital electron populations 1.70103 1.08680 1.28290 1.52661 1.26172 0.95710 1.04034 0.93799 0.85534 0.79700 0.77165 0.79510 1.18691 1.21151 1.15945 1.21524 0.92573 0.92836 1.50777 0.96284 1.19515 0.93573 0.94128 0.97169 1.21146 0.93526 0.97364 1.00146 1.22826 0.96124 0.93945 1.06186 1.20893 0.81429 0.91433 0.75779 1.90605 1.57081 1.48370 1.48708 1.48081 1.11174 1.08350 1.64594 1.22893 0.99008 0.79005 0.97093 1.23457 1.01059 0.97143 0.98758 1.22638 1.01533 0.95881 0.96502 1.23244 1.01673 0.96971 0.97052 1.23032 0.95418 0.84844 0.95083 1.24739 1.06316 0.95164 0.98707 1.22707 1.02843 0.96263 0.95033 1.23665 1.01215 0.97173 0.98669 0.92481 0.95340 0.95304 0.94705 0.94439 0.85964 0.85848 0.83898 0.91045 0.90689 0.87593 0.92687 0.89716 0.92291 0.84102 0.86694 0.89716 0.87790 0.91193 0.89435 0.91003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -62.13 13.96 21.45 0.30 -61.83 16 2 C 0.00 -0.07 5.47 84.66 0.46 0.39 16 3 Si 0.96 44.09 27.47 68.60 1.88 45.98 16 4 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 5 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 6 H -0.24 -9.72 6.54 99.48 0.65 -9.07 16 7 C -0.54 -32.74 9.66 25.60 0.25 -32.50 16 8 H 0.02 1.30 7.99 -2.91 -0.02 1.27 16 9 C -0.01 -0.31 4.04 29.85 0.12 -0.19 16 10 C -0.08 -3.60 4.61 30.60 0.14 -3.46 16 11 C -0.15 -4.77 3.32 29.85 0.10 -4.67 16 12 C 0.51 16.33 6.63 87.66 0.58 16.91 16 13 O -0.57 -22.64 11.71 -3.02 -0.04 -22.67 16 14 N -0.59 -13.56 2.97 -768.26 -2.28 -15.84 16 15 C 0.12 2.45 4.42 45.52 0.20 2.65 16 16 C -0.17 -3.96 7.38 31.18 0.23 -3.73 16 17 C -0.13 -2.59 8.09 31.18 0.25 -2.34 16 18 C -0.15 -3.31 7.44 31.12 0.23 -3.08 16 19 C 0.12 1.90 4.41 45.51 0.20 2.10 16 20 C -0.21 -3.49 7.13 31.18 0.22 -3.27 16 21 C -0.13 -1.89 7.74 31.18 0.24 -1.65 16 22 C -0.17 -2.83 7.23 31.12 0.23 -2.61 16 23 H 0.27 16.00 8.31 -92.71 -0.77 15.23 16 24 H 0.03 1.28 7.20 -2.39 -0.02 1.26 16 25 H 0.03 1.27 7.57 -2.39 -0.02 1.25 16 26 H 0.03 1.60 8.14 -2.39 -0.02 1.58 16 27 H 0.04 1.77 7.91 -2.39 -0.02 1.75 16 28 H 0.12 3.31 3.49 -2.39 -0.01 3.30 16 29 H 0.12 3.42 6.00 -2.39 -0.01 3.41 16 30 H 0.14 1.75 7.93 -2.39 -0.02 1.73 16 31 H 0.07 2.37 5.54 -2.38 -0.01 2.36 16 32 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 35 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.06 1.77 6.39 -2.39 -0.02 1.75 16 37 H 0.14 1.37 7.94 -2.39 -0.02 1.36 16 38 H 0.12 2.40 2.61 -18.13 -0.05 2.35 16 39 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 40 H 0.10 1.04 8.14 -2.38 -0.02 1.02 16 41 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 42 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 43 H 0.07 1.60 5.65 -2.38 -0.01 1.59 16 Total: -1.00 -75.73 322.23 4.22 -71.52 By element: Atomic # 1 Polarization: 17.38 SS G_CDS: 0.89 Total: 18.27 kcal Atomic # 6 Polarization: -38.89 SS G_CDS: 3.46 Total: -35.43 kcal Atomic # 7 Polarization: -75.69 SS G_CDS: -1.98 Total: -77.67 kcal Atomic # 8 Polarization: -22.64 SS G_CDS: -0.04 Total: -22.67 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 1.88 Total: 45.98 kcal Total: -75.73 4.22 -71.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594039285.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.110 kcal (2) G-P(sol) polarization free energy of solvation -75.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.519 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds