Wall clock time and date at job start Mon Mar 30 2020 06:40:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86798 * 120.00154 * 2 1 4 4 H 1.48504 * 109.47127 * 269.99684 * 3 2 1 5 5 H 1.48505 * 109.47053 * 29.99260 * 3 2 1 6 6 H 1.48499 * 109.47465 * 149.99841 * 3 2 1 7 7 C 1.37880 * 120.00017 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00076 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00053 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.47295 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47116 * 180.02562 * 10 9 7 12 12 C 1.50703 * 109.47061 * 179.97438 * 11 10 9 13 13 O 1.21278 * 119.99826 * 359.97438 * 12 11 10 14 14 N 1.34777 * 119.99823 * 179.97438 * 12 11 10 15 15 C 1.46499 * 119.99584 * 179.97438 * 14 12 11 16 16 C 1.53002 * 109.46968 * 180.02562 * 15 14 12 17 17 C 1.52997 * 109.47206 * 179.97438 * 16 15 14 18 18 C 1.53006 * 109.47127 * 0.02562 * 17 16 15 19 19 C 1.52999 * 109.46626 * 299.99539 * 18 17 16 20 20 C 1.52997 * 109.46991 * 60.00378 * 19 18 17 21 21 C 1.52997 * 109.47164 * 59.99836 * 18 17 16 22 22 C 1.52999 * 109.47304 * 60.00133 * 15 14 12 23 23 H 0.97006 * 120.00034 * 0.02562 * 1 2 3 24 24 H 1.08998 * 109.47073 * 59.99848 * 9 7 2 25 25 H 1.09005 * 109.47394 * 299.99831 * 9 7 2 26 26 H 1.08998 * 109.47214 * 59.99898 * 10 9 7 27 27 H 1.08999 * 109.46656 * 299.99746 * 10 9 7 28 28 H 1.08998 * 109.47362 * 59.99744 * 11 10 9 29 29 H 1.08999 * 109.46951 * 299.99322 * 11 10 9 30 30 H 0.96997 * 119.99996 * 0.02562 * 14 12 11 31 31 H 1.08998 * 109.47006 * 60.00095 * 16 15 14 32 32 H 1.08999 * 109.47160 * 299.99762 * 16 15 14 33 33 H 1.09001 * 109.47502 * 240.00500 * 17 16 15 34 34 H 1.09001 * 109.47289 * 120.00297 * 17 16 15 35 35 H 1.09000 * 109.47050 * 179.97438 * 18 17 16 36 36 H 1.09002 * 109.46719 * 180.02562 * 19 18 17 37 37 H 1.08993 * 109.47839 * 299.99931 * 19 18 17 38 38 H 1.09006 * 109.47073 * 239.99153 * 20 19 18 39 39 H 1.09008 * 109.47182 * 119.99786 * 20 19 18 40 40 H 1.09001 * 109.47375 * 59.99966 * 21 18 17 41 41 H 1.09002 * 109.46777 * 180.02562 * 21 18 17 42 42 H 1.08997 * 109.47345 * 300.00177 * 22 15 14 43 43 H 1.08999 * 109.47218 * 59.99997 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0018 11 6 1.4802 -4.9871 0.0012 12 6 2.4595 -6.1326 0.0018 13 8 3.6519 -5.9109 0.0022 14 7 2.0102 -7.4032 0.0019 15 6 2.9622 -8.5167 0.0020 16 6 2.1972 -9.8418 0.0015 17 6 3.1915 -11.0047 0.0009 18 6 4.6193 -10.4549 0.0016 19 6 4.8364 -9.5978 -1.2470 20 6 3.8422 -8.4349 -1.2464 21 6 4.8358 -9.5995 1.2515 22 6 3.8419 -8.4356 1.2512 23 1 -0.4850 0.8401 -0.0004 24 1 0.6247 -2.5571 -0.8896 25 1 0.6240 -2.5568 0.8903 26 1 2.8712 -3.6040 0.8922 27 1 2.8725 -3.6047 -0.8877 28 1 0.8545 -5.0450 -0.8894 29 1 0.8527 -5.0447 0.8905 30 1 1.0566 -7.5804 0.0012 31 1 1.5709 -9.8993 -0.8887 32 1 1.5703 -9.8997 0.8912 33 1 3.0370 -11.6143 -0.8894 34 1 3.0371 -11.6152 0.8906 35 1 5.3276 -11.2834 0.0017 36 1 5.8537 -9.2065 -1.2467 37 1 4.6822 -10.2072 -2.1374 38 1 3.2157 -8.4920 -2.1367 39 1 4.3872 -7.4909 -1.2457 40 1 4.6811 -10.2101 2.1411 41 1 5.8529 -9.2075 1.2518 42 1 4.3869 -7.4916 1.2512 43 1 3.2153 -8.4933 2.1412 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594045238.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:23 Heat of formation + Delta-G solvation = -77.651272 kcal Electronic energy + Delta-G solvation = -20539.132077 eV Core-core repulsion = 17582.205759 eV Total energy + Delta-G solvation = -2956.926318 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.09340 -38.68953 -34.43071 -34.05398 -32.03857 -31.09227 -30.95483 -29.98460 -27.51622 -23.93900 -23.07614 -22.76079 -21.91273 -20.31980 -19.57977 -17.38717 -16.87343 -16.48983 -16.07876 -15.92652 -15.33182 -15.15670 -14.39562 -14.01632 -13.38409 -13.13620 -12.99875 -12.46237 -12.31902 -12.26601 -12.20904 -12.17287 -12.03877 -11.96706 -11.73688 -11.27740 -10.78589 -10.69693 -10.58513 -10.54757 -10.50441 -10.16663 -10.07616 -9.63586 -9.41653 -9.15318 -8.91217 -8.83838 -8.29806 -5.95507 -3.96744 3.00094 3.32444 3.36294 3.41998 3.47097 4.32359 4.36962 4.51120 4.65732 4.91646 5.00994 5.08095 5.16294 5.16920 5.22129 5.30604 5.30875 5.36608 5.40564 5.41680 5.69821 5.74585 5.76802 5.78060 5.91805 6.00828 6.01443 6.09128 6.18743 6.21728 6.31192 6.36412 6.36569 6.72726 6.77222 6.97682 7.20357 7.71993 7.75661 7.87060 8.05573 8.49604 8.56766 9.10476 9.67079 11.16036 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.046810 B = 0.003320 C = 0.003231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.024993 B = 8432.120816 C = 8662.961377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.517 4.517 8 H 0.056 0.944 9 C 0.020 3.980 10 C -0.094 4.094 11 C -0.140 4.140 12 C 0.515 3.485 13 O -0.533 6.533 14 N -0.736 5.736 15 C 0.183 3.817 16 C -0.120 4.120 17 C -0.107 4.107 18 C -0.091 4.091 19 C -0.109 4.109 20 C -0.130 4.130 21 C -0.109 4.109 22 C -0.130 4.130 23 H 0.259 0.741 24 H 0.015 0.985 25 H 0.015 0.985 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.397 0.603 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.070 0.930 36 H 0.063 0.937 37 H 0.060 0.940 38 H 0.058 0.942 39 H 0.087 0.913 40 H 0.060 0.940 41 H 0.063 0.937 42 H 0.087 0.913 43 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.358 -24.406 0.007 24.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.555 4.555 8 H 0.074 0.926 9 C -0.017 4.017 10 C -0.132 4.132 11 C -0.180 4.180 12 C 0.303 3.697 13 O -0.409 6.409 14 N -0.388 5.388 15 C 0.097 3.903 16 C -0.158 4.158 17 C -0.145 4.145 18 C -0.109 4.109 19 C -0.147 4.147 20 C -0.168 4.168 21 C -0.147 4.147 22 C -0.168 4.168 23 H 0.069 0.931 24 H 0.033 0.967 25 H 0.033 0.967 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.104 0.896 29 H 0.105 0.895 30 H 0.231 0.769 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.089 0.911 36 H 0.082 0.918 37 H 0.078 0.922 38 H 0.077 0.923 39 H 0.106 0.894 40 H 0.079 0.921 41 H 0.082 0.918 42 H 0.106 0.894 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 5.069 -24.102 0.013 24.630 hybrid contribution -0.207 0.831 -0.013 0.857 sum 4.862 -23.271 0.000 23.773 Atomic orbital electron populations 1.69963 1.06040 1.26501 1.51280 1.25021 0.94854 0.99242 0.95426 0.86596 0.79907 0.83439 0.78092 1.20687 1.21279 1.19832 1.21280 0.93186 0.91040 1.50042 0.92592 1.19134 0.93994 0.91515 0.97066 1.21423 0.98576 0.91560 1.01604 1.21854 0.98241 0.94318 1.03575 1.21180 0.90367 0.83679 0.74474 1.90604 1.17160 1.84658 1.48524 1.46284 1.09641 1.05658 1.77172 1.20100 0.89187 0.85354 0.95622 1.21753 0.97987 0.93730 1.02323 1.21476 0.94261 0.96836 1.01902 1.21070 0.96690 0.97714 0.95445 1.21510 0.99492 0.96504 0.97170 1.21915 0.98002 1.00374 0.96546 1.21523 0.99500 0.96500 0.97163 1.21930 0.98004 1.00356 0.96535 0.93094 0.96663 0.96659 0.92757 0.92769 0.89554 0.89549 0.76895 0.91449 0.91442 0.91776 0.91782 0.91143 0.91841 0.92156 0.92314 0.89410 0.92143 0.91842 0.89413 0.92317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.34 13.29 55.43 0.74 -26.61 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 22.20 29.54 -169.99 -5.02 17.18 16 4 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.27 -6.71 7.11 56.52 0.40 -6.30 16 7 C -0.52 -15.13 9.11 -34.44 -0.31 -15.45 16 8 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 9 C 0.02 0.52 4.97 -27.88 -0.14 0.39 16 10 C -0.09 -2.04 4.44 -26.73 -0.12 -2.16 16 11 C -0.14 -2.34 5.70 -27.88 -0.16 -2.50 16 12 C 0.51 8.21 7.25 -10.98 -0.08 8.13 16 13 O -0.53 -10.25 12.19 5.56 0.07 -10.19 16 14 N -0.74 -8.85 5.11 -47.63 -0.24 -9.09 16 15 C 0.18 2.04 0.80 -131.84 -0.11 1.94 16 16 C -0.12 -1.01 5.10 -26.73 -0.14 -1.15 16 17 C -0.11 -0.81 5.71 -26.73 -0.15 -0.96 16 18 C -0.09 -0.77 3.19 -90.62 -0.29 -1.06 16 19 C -0.11 -1.05 5.71 -26.73 -0.15 -1.20 16 20 C -0.13 -1.55 4.91 -26.76 -0.13 -1.68 16 21 C -0.11 -1.05 5.71 -26.71 -0.15 -1.20 16 22 C -0.13 -1.55 4.92 -26.70 -0.13 -1.68 16 23 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 24 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.05 1.23 8.10 -51.93 -0.42 0.81 16 27 H 0.05 1.23 8.10 -51.93 -0.42 0.81 16 28 H 0.09 1.33 8.14 -51.93 -0.42 0.90 16 29 H 0.09 1.33 8.14 -51.93 -0.42 0.90 16 30 H 0.40 3.72 8.47 -40.82 -0.35 3.38 16 31 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.09 1.33 6.16 -51.92 -0.32 1.01 16 40 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.09 1.33 6.17 -51.93 -0.32 1.01 16 43 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 329.61 15.07 4.97 4.97 Total: -1.00 -32.30 329.61 -9.36 -41.66 By element: Atomic # 1 Polarization: 6.85 SS G_CDS: -7.71 Total: -0.86 kcal Atomic # 6 Polarization: -14.91 SS G_CDS: -2.16 Total: -17.07 kcal Atomic # 7 Polarization: -36.19 SS G_CDS: 0.49 Total: -35.70 kcal Atomic # 8 Polarization: -10.25 SS G_CDS: 0.07 Total: -10.19 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -32.30 -9.36 -41.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594045238.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.987 kcal (2) G-P(sol) polarization free energy of solvation -32.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds