Wall clock time and date at job start Mon Mar 30 2020 06:40:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86798 * 120.00154 * 2 1 4 4 H 1.48504 * 109.47127 * 269.99684 * 3 2 1 5 5 H 1.48505 * 109.47053 * 29.99260 * 3 2 1 6 6 H 1.48499 * 109.47465 * 149.99841 * 3 2 1 7 7 C 1.37880 * 120.00017 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00076 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00053 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.47295 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47116 * 180.02562 * 10 9 7 12 12 C 1.50703 * 109.47061 * 179.97438 * 11 10 9 13 13 O 1.21278 * 119.99826 * 359.97438 * 12 11 10 14 14 N 1.34777 * 119.99823 * 179.97438 * 12 11 10 15 15 C 1.46499 * 119.99584 * 179.97438 * 14 12 11 16 16 C 1.53002 * 109.46968 * 180.02562 * 15 14 12 17 17 C 1.52997 * 109.47206 * 179.97438 * 16 15 14 18 18 C 1.53006 * 109.47127 * 0.02562 * 17 16 15 19 19 C 1.52999 * 109.46626 * 299.99539 * 18 17 16 20 20 C 1.52997 * 109.46991 * 60.00378 * 19 18 17 21 21 C 1.52997 * 109.47164 * 59.99836 * 18 17 16 22 22 C 1.52999 * 109.47304 * 60.00133 * 15 14 12 23 23 H 0.97006 * 120.00034 * 0.02562 * 1 2 3 24 24 H 1.08998 * 109.47073 * 59.99848 * 9 7 2 25 25 H 1.09005 * 109.47394 * 299.99831 * 9 7 2 26 26 H 1.08998 * 109.47214 * 59.99898 * 10 9 7 27 27 H 1.08999 * 109.46656 * 299.99746 * 10 9 7 28 28 H 1.08998 * 109.47362 * 59.99744 * 11 10 9 29 29 H 1.08999 * 109.46951 * 299.99322 * 11 10 9 30 30 H 0.96997 * 119.99996 * 0.02562 * 14 12 11 31 31 H 1.08998 * 109.47006 * 60.00095 * 16 15 14 32 32 H 1.08999 * 109.47160 * 299.99762 * 16 15 14 33 33 H 1.09001 * 109.47502 * 240.00500 * 17 16 15 34 34 H 1.09001 * 109.47289 * 120.00297 * 17 16 15 35 35 H 1.09000 * 109.47050 * 179.97438 * 18 17 16 36 36 H 1.09002 * 109.46719 * 180.02562 * 19 18 17 37 37 H 1.08993 * 109.47839 * 299.99931 * 19 18 17 38 38 H 1.09006 * 109.47073 * 239.99153 * 20 19 18 39 39 H 1.09008 * 109.47182 * 119.99786 * 20 19 18 40 40 H 1.09001 * 109.47375 * 59.99966 * 21 18 17 41 41 H 1.09002 * 109.46777 * 180.02562 * 21 18 17 42 42 H 1.08997 * 109.47345 * 300.00177 * 22 15 14 43 43 H 1.08999 * 109.47218 * 59.99997 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0018 11 6 1.4802 -4.9871 0.0012 12 6 2.4595 -6.1326 0.0018 13 8 3.6519 -5.9109 0.0022 14 7 2.0102 -7.4032 0.0019 15 6 2.9622 -8.5167 0.0020 16 6 2.1972 -9.8418 0.0015 17 6 3.1915 -11.0047 0.0009 18 6 4.6193 -10.4549 0.0016 19 6 4.8364 -9.5978 -1.2470 20 6 3.8422 -8.4349 -1.2464 21 6 4.8358 -9.5995 1.2515 22 6 3.8419 -8.4356 1.2512 23 1 -0.4850 0.8401 -0.0004 24 1 0.6247 -2.5571 -0.8896 25 1 0.6240 -2.5568 0.8903 26 1 2.8712 -3.6040 0.8922 27 1 2.8725 -3.6047 -0.8877 28 1 0.8545 -5.0450 -0.8894 29 1 0.8527 -5.0447 0.8905 30 1 1.0566 -7.5804 0.0012 31 1 1.5709 -9.8993 -0.8887 32 1 1.5703 -9.8997 0.8912 33 1 3.0370 -11.6143 -0.8894 34 1 3.0371 -11.6152 0.8906 35 1 5.3276 -11.2834 0.0017 36 1 5.8537 -9.2065 -1.2467 37 1 4.6822 -10.2072 -2.1374 38 1 3.2157 -8.4920 -2.1367 39 1 4.3872 -7.4909 -1.2457 40 1 4.6811 -10.2101 2.1411 41 1 5.8529 -9.2075 1.2518 42 1 4.3869 -7.4916 1.2512 43 1 3.2153 -8.4933 2.1412 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594045238.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:22 Heat of formation + Delta-G solvation = -97.004274 kcal Electronic energy + Delta-G solvation = -20539.971286 eV Core-core repulsion = 17582.205759 eV Total energy + Delta-G solvation = -2957.765528 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.02050 -39.86169 -36.16410 -35.35349 -34.03031 -31.81602 -31.78130 -31.14784 -29.24926 -25.82745 -23.86281 -23.62354 -23.02675 -21.90450 -20.91704 -18.69095 -18.13775 -17.81934 -17.34154 -16.73215 -16.53354 -16.52549 -16.20220 -15.27558 -14.96970 -14.32001 -14.05654 -13.90354 -13.65741 -13.36511 -13.16362 -13.04351 -12.99940 -12.99424 -12.81369 -12.78345 -12.55001 -12.50944 -12.39539 -11.56606 -11.54733 -11.41361 -11.32550 -11.23968 -10.99224 -10.88176 -10.55367 -10.26896 -9.90045 -8.21185 -6.31311 1.38618 1.39913 1.51547 1.72529 2.25072 2.41533 3.11615 3.52320 3.62957 3.84674 4.02310 4.14193 4.23969 4.26300 4.34361 4.37631 4.42900 4.44600 4.46902 4.48168 4.49719 4.72318 4.80066 4.96933 4.97652 5.10730 5.12187 5.12700 5.18999 5.27761 5.30391 5.34013 5.40110 5.40292 5.45991 5.47226 5.52863 5.73451 5.74581 5.86096 6.26704 6.68127 6.84111 7.36646 7.38683 8.90409 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.046810 B = 0.003320 C = 0.003231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.024993 B = 8432.120816 C = 8662.961377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.003 3.997 3 Si 0.962 3.038 4 H -0.271 1.271 5 H -0.277 1.277 6 H -0.268 1.268 7 C -0.548 4.548 8 H 0.050 0.950 9 C 0.026 3.974 10 C -0.080 4.080 11 C -0.132 4.132 12 C 0.516 3.484 13 O -0.572 6.572 14 N -0.717 5.717 15 C 0.178 3.822 16 C -0.115 4.115 17 C -0.104 4.104 18 C -0.088 4.088 19 C -0.107 4.107 20 C -0.130 4.130 21 C -0.107 4.107 22 C -0.130 4.130 23 H 0.265 0.735 24 H 0.000 1.000 25 H 0.000 1.000 26 H 0.039 0.961 27 H 0.039 0.961 28 H 0.104 0.896 29 H 0.104 0.896 30 H 0.413 0.587 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.089 0.911 36 H 0.052 0.948 37 H 0.077 0.923 38 H 0.061 0.939 39 H 0.047 0.953 40 H 0.077 0.923 41 H 0.052 0.948 42 H 0.047 0.953 43 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.955 -26.380 -0.009 26.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.195 4.195 3 Si 0.787 3.213 4 H -0.197 1.197 5 H -0.202 1.202 6 H -0.193 1.193 7 C -0.586 4.586 8 H 0.069 0.931 9 C -0.011 4.011 10 C -0.118 4.118 11 C -0.172 4.172 12 C 0.304 3.696 13 O -0.452 6.452 14 N -0.369 5.369 15 C 0.093 3.907 16 C -0.153 4.153 17 C -0.142 4.142 18 C -0.106 4.106 19 C -0.145 4.145 20 C -0.169 4.169 21 C -0.145 4.145 22 C -0.169 4.169 23 H 0.074 0.926 24 H 0.019 0.981 25 H 0.019 0.981 26 H 0.057 0.943 27 H 0.057 0.943 28 H 0.123 0.877 29 H 0.123 0.877 30 H 0.250 0.750 31 H 0.097 0.903 32 H 0.097 0.903 33 H 0.097 0.903 34 H 0.097 0.903 35 H 0.108 0.892 36 H 0.071 0.929 37 H 0.096 0.904 38 H 0.079 0.921 39 H 0.066 0.934 40 H 0.096 0.904 41 H 0.071 0.929 42 H 0.066 0.934 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 4.637 -26.117 -0.004 26.526 hybrid contribution -0.084 1.455 -0.009 1.458 sum 4.553 -24.662 -0.012 25.078 Atomic orbital electron populations 1.70066 1.07508 1.27812 1.51557 1.25915 0.95844 1.03096 0.94652 0.85491 0.78619 0.78639 0.78577 1.19665 1.20211 1.19296 1.21691 0.93311 0.92849 1.50784 0.93138 1.19019 0.94202 0.92441 0.95439 1.21129 0.97546 0.93035 1.00102 1.21686 0.98068 0.92042 1.05382 1.20953 0.89415 0.84777 0.74484 1.90614 1.18620 1.85379 1.50540 1.46115 1.10888 1.04628 1.75295 1.20290 0.89247 0.86374 0.94822 1.21757 0.98133 0.91864 1.03495 1.21503 0.92741 0.96499 1.03433 1.21092 0.98246 0.97625 0.93673 1.21516 0.98156 0.96007 0.98866 1.21870 0.98391 0.99512 0.97087 1.21529 0.98160 0.95999 0.98860 1.21885 0.98394 0.99497 0.97079 0.92630 0.98145 0.98149 0.94262 0.94250 0.87742 0.87739 0.74991 0.90295 0.90289 0.90272 0.90277 0.89229 0.92889 0.90414 0.92060 0.93444 0.90397 0.92892 0.93450 0.92064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.05 13.29 21.45 0.28 -56.77 16 2 C 0.00 0.17 5.46 84.66 0.46 0.63 16 3 Si 0.96 45.76 29.54 68.60 2.03 47.79 16 4 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 5 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 6 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 7 C -0.55 -32.86 9.11 25.60 0.23 -32.62 16 8 H 0.05 3.00 7.74 -2.91 -0.02 2.97 16 9 C 0.03 1.41 4.97 29.85 0.15 1.56 16 10 C -0.08 -3.61 4.44 30.59 0.14 -3.48 16 11 C -0.13 -4.41 5.70 29.85 0.17 -4.24 16 12 C 0.52 16.64 7.25 87.66 0.64 17.27 16 13 O -0.57 -23.10 12.19 -3.02 -0.04 -23.14 16 14 N -0.72 -16.55 5.11 -423.00 -2.16 -18.71 16 15 C 0.18 3.77 0.80 3.59 0.00 3.77 16 16 C -0.11 -1.56 5.10 30.59 0.16 -1.40 16 17 C -0.10 -1.16 5.71 30.60 0.17 -0.99 16 18 C -0.09 -1.27 3.19 -10.79 -0.03 -1.30 16 19 C -0.11 -1.94 5.71 30.59 0.17 -1.76 16 20 C -0.13 -3.08 4.91 30.58 0.15 -2.93 16 21 C -0.11 -1.94 5.71 30.61 0.17 -1.76 16 22 C -0.13 -3.08 4.92 30.61 0.15 -2.93 16 23 H 0.26 15.19 8.31 -92.70 -0.77 14.42 16 24 H 0.00 0.01 8.14 -2.39 -0.02 -0.01 16 25 H 0.00 0.01 8.14 -2.38 -0.02 -0.01 16 26 H 0.04 1.85 8.10 -2.39 -0.02 1.84 16 27 H 0.04 1.86 8.10 -2.39 -0.02 1.84 16 28 H 0.10 3.12 8.14 -2.39 -0.02 3.10 16 29 H 0.10 3.12 8.14 -2.39 -0.02 3.10 16 30 H 0.41 6.83 8.47 -92.71 -0.79 6.05 16 31 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.08 0.70 8.14 -2.39 -0.02 0.69 16 35 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 38 H 0.06 1.37 8.14 -2.38 -0.02 1.35 16 39 H 0.05 1.52 6.16 -2.38 -0.01 1.50 16 40 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 41 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 42 H 0.05 1.52 6.17 -2.39 -0.01 1.50 16 43 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 Total: -1.00 -71.97 329.61 3.03 -68.94 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: 0.18 Total: 12.07 kcal Atomic # 6 Polarization: -32.91 SS G_CDS: 2.73 Total: -30.17 kcal Atomic # 7 Polarization: -73.60 SS G_CDS: -1.87 Total: -75.48 kcal Atomic # 8 Polarization: -23.10 SS G_CDS: -0.04 Total: -23.14 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 2.03 Total: 47.79 kcal Total: -71.97 3.03 -68.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594045238.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.065 kcal (2) G-P(sol) polarization free energy of solvation -71.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds