Wall clock time and date at job start Mon Mar 30 2020 06:50:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48498 * 109.47109 * 270.00337 * 3 2 1 5 5 H 1.48507 * 109.46754 * 30.00076 * 3 2 1 6 6 H 1.48498 * 109.47278 * 149.99907 * 3 2 1 7 7 C 1.37884 * 119.99985 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99697 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 180.27663 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 C 1.52994 * 109.47119 * 180.02562 * 10 9 7 12 12 C 1.50708 * 109.47080 * 180.02562 * 11 10 9 13 13 O 1.21277 * 119.99772 * 359.97438 * 12 11 10 14 14 N 1.34771 * 120.00117 * 179.97438 * 12 11 10 15 15 C 1.47028 * 125.64673 * 359.69021 * 14 12 11 16 16 C 1.54321 * 107.27366 * 180.97028 * 15 14 12 17 17 C 1.55151 * 102.86489 * 22.52434 * 16 15 14 18 18 H 1.08998 * 111.00055 * 82.37580 * 17 16 15 19 19 C 1.52999 * 111.00532 * 206.23043 * 17 16 15 20 20 C 1.53782 * 113.61537 * 271.33359 * 19 17 16 21 21 C 1.53954 * 87.02055 * 220.04592 * 20 19 17 22 22 C 1.53777 * 113.61477 * 173.72689 * 19 17 16 23 23 C 1.47421 * 125.64900 * 179.97438 * 14 12 11 24 24 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 25 25 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 26 26 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 27 27 H 1.09004 * 109.47066 * 299.99797 * 10 9 7 28 28 H 1.09000 * 109.47234 * 59.99288 * 10 9 7 29 29 H 1.08998 * 109.46640 * 299.99314 * 11 10 9 30 30 H 1.08994 * 109.47663 * 59.99852 * 11 10 9 31 31 H 1.09000 * 109.88087 * 300.51187 * 15 14 12 32 32 H 1.08998 * 109.88546 * 61.67957 * 15 14 12 33 33 H 1.09000 * 110.91991 * 264.10753 * 16 15 14 34 34 H 1.09002 * 110.74128 * 140.85873 * 16 15 14 35 35 H 1.08999 * 112.84710 * 42.52775 * 19 17 16 36 36 H 1.09000 * 113.61093 * 334.57034 * 20 19 17 37 37 H 1.09000 * 113.61375 * 105.46666 * 20 19 17 38 38 H 1.08994 * 113.53647 * 270.81393 * 21 20 19 39 39 H 1.09001 * 113.73691 * 139.94045 * 21 20 19 40 40 H 1.08997 * 113.61518 * 254.52752 * 22 19 17 41 41 H 1.08994 * 113.61636 * 25.43218 * 22 19 17 42 42 H 1.09003 * 110.36837 * 274.66839 * 23 14 12 43 43 H 1.08996 * 110.36754 * 36.88687 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1941 0.0058 10 6 4.0215 -2.6366 0.0108 11 6 5.5515 -2.6366 0.0178 12 6 6.0538 -4.0574 0.0221 13 8 5.2657 -4.9792 0.0202 14 7 7.3788 -4.3037 0.0280 15 6 8.4396 -3.2857 0.0244 16 6 9.7905 -4.0316 0.0089 17 6 9.4126 -5.4186 -0.5748 18 1 9.3675 -5.3852 -1.6633 19 6 10.3888 -6.4973 -0.1013 20 6 11.6162 -6.6607 -1.0133 21 6 11.4743 -8.1784 -0.7974 22 6 9.9840 -7.9208 -0.5190 23 6 8.0046 -5.6385 0.0332 24 1 -0.4849 0.8400 0.0004 25 1 3.8786 -0.6821 -0.8838 26 1 3.8711 -0.6785 0.8962 27 1 3.6545 -3.1486 0.9003 28 1 3.6618 -3.1522 -0.8796 29 1 5.9188 -2.1245 -0.8715 30 1 5.9108 -2.1211 0.9084 31 1 8.3495 -2.6596 -0.8633 32 1 8.3675 -2.6720 0.9223 33 1 10.1904 -4.1336 1.0178 34 1 10.5051 -3.5226 -0.6380 35 1 10.6392 -6.4070 0.9557 36 1 11.4401 -6.3476 -2.0424 37 1 12.5310 -6.2426 -0.5933 38 1 12.0228 -8.5479 0.0689 39 1 11.6550 -8.7681 -1.6961 40 1 9.5831 -8.5186 0.2994 41 1 9.3609 -7.9529 -1.4128 42 1 8.0862 -6.0153 1.0528 43 1 7.4282 -6.3301 -0.5811 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594049266.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:41 Heat of formation + Delta-G solvation = -39.965868 kcal Electronic energy + Delta-G solvation = -19787.749988 eV Core-core repulsion = 16832.457831 eV Total energy + Delta-G solvation = -2955.292157 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.34861 -39.03138 -36.96733 -34.27741 -32.24439 -31.71105 -29.53308 -28.36887 -26.09688 -25.47151 -23.71973 -22.68010 -20.91307 -20.09139 -19.83322 -18.98893 -16.95917 -16.59422 -16.48234 -15.89205 -15.28541 -14.89441 -14.38132 -14.06364 -13.84396 -13.70761 -12.99249 -12.87769 -12.82486 -12.64843 -12.55078 -12.19027 -12.13264 -11.93992 -11.57300 -11.34868 -11.06215 -10.93810 -10.86487 -10.75386 -10.47971 -10.36995 -9.96926 -9.80296 -9.66560 -9.38291 -9.10229 -8.62026 -8.48699 -5.98396 -3.95938 2.88706 3.04030 3.33192 3.40105 3.43327 3.96174 4.23349 4.25448 4.44157 4.47453 4.49189 4.70941 4.74281 5.02727 5.05561 5.08371 5.21962 5.34854 5.36495 5.39408 5.42325 5.47427 5.52796 5.56159 5.58425 5.59476 5.62914 5.71396 5.79483 5.85564 5.98293 6.11420 6.16803 6.31971 6.59914 6.73386 6.95521 7.40247 7.48873 7.58553 7.85281 8.39645 8.62034 9.08570 9.63680 11.15355 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.048965 B = 0.003035 C = 0.002893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 571.702740 B = 9224.919097 C = 9676.059828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.064 3.936 3 Si 0.881 3.119 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.266 1.266 7 C -0.518 4.518 8 H 0.073 0.927 9 C -0.014 4.014 10 C -0.088 4.088 11 C -0.136 4.136 12 C 0.528 3.472 13 O -0.535 6.535 14 N -0.629 5.629 15 C 0.100 3.900 16 C -0.126 4.126 17 C -0.092 4.092 18 H 0.085 0.915 19 C -0.099 4.099 20 C -0.135 4.135 21 C -0.144 4.144 22 C -0.139 4.139 23 C 0.112 3.888 24 H 0.262 0.738 25 H 0.011 0.989 26 H 0.015 0.985 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.076 0.924 34 H 0.081 0.919 35 H 0.092 0.908 36 H 0.081 0.919 37 H 0.066 0.934 38 H 0.078 0.922 39 H 0.066 0.934 40 H 0.067 0.933 41 H 0.082 0.918 42 H 0.064 0.936 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.942 -11.198 -0.823 30.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.137 4.137 3 Si 0.709 3.291 4 H -0.204 1.204 5 H -0.215 1.215 6 H -0.190 1.190 7 C -0.556 4.556 8 H 0.091 0.909 9 C -0.051 4.051 10 C -0.126 4.126 11 C -0.176 4.176 12 C 0.318 3.682 13 O -0.410 6.410 14 N -0.365 5.365 15 C -0.023 4.023 16 C -0.163 4.163 17 C -0.111 4.111 18 H 0.103 0.897 19 C -0.117 4.117 20 C -0.172 4.172 21 C -0.182 4.182 22 C -0.176 4.176 23 C -0.010 4.010 24 H 0.072 0.928 25 H 0.029 0.971 26 H 0.033 0.967 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.105 0.895 30 H 0.105 0.895 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.095 0.905 34 H 0.099 0.901 35 H 0.110 0.890 36 H 0.099 0.901 37 H 0.085 0.915 38 H 0.097 0.903 39 H 0.085 0.915 40 H 0.086 0.914 41 H 0.101 0.899 42 H 0.082 0.918 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 27.239 -11.551 -0.815 29.598 hybrid contribution 0.432 1.010 0.009 1.099 sum 27.671 -10.541 -0.805 29.621 Atomic orbital electron populations 1.69926 1.06300 1.26761 1.51419 1.25059 0.94751 0.99152 0.94734 0.86756 0.80324 0.83636 0.78403 1.20356 1.21458 1.19040 1.21173 0.89536 0.94548 1.50342 0.90930 1.19603 0.97302 0.92158 0.96070 1.21278 0.89223 0.99541 1.02538 1.21849 1.00500 0.91714 1.03506 1.20892 0.79712 0.92662 0.74924 1.90694 1.54162 1.46960 1.49232 1.48642 1.05364 1.07409 1.75105 1.22018 0.86705 0.91524 1.02073 1.22687 0.96148 0.95494 1.02014 1.22405 0.93876 0.94414 1.00406 0.89705 1.22492 0.95405 0.94089 0.99752 1.22973 0.97908 0.96342 1.00007 1.22848 0.96974 0.96584 1.01759 1.22943 0.96530 0.96304 1.01846 1.22151 0.92352 0.85768 1.00778 0.92815 0.97115 0.96681 0.92085 0.92101 0.89520 0.89498 0.91252 0.91265 0.90506 0.90059 0.88995 0.90068 0.91546 0.90323 0.91536 0.91372 0.89932 0.91794 0.90620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.68 13.96 55.43 0.77 -27.90 16 2 C 0.06 1.91 5.47 -17.82 -0.10 1.81 16 3 Si 0.88 22.00 27.47 -169.99 -4.67 17.33 16 4 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 5 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 6 H -0.27 -6.29 6.54 56.52 0.37 -5.92 16 7 C -0.52 -15.38 9.66 -34.44 -0.33 -15.71 16 8 H 0.07 2.34 7.99 -52.49 -0.42 1.92 16 9 C -0.01 -0.34 4.04 -27.88 -0.11 -0.46 16 10 C -0.09 -1.89 4.44 -26.74 -0.12 -2.01 16 11 C -0.14 -2.25 4.89 -27.88 -0.14 -2.39 16 12 C 0.53 8.94 7.85 -10.98 -0.09 8.85 16 13 O -0.53 -11.23 16.24 5.56 0.09 -11.14 16 14 N -0.63 -8.12 3.33 -170.50 -0.57 -8.68 16 15 C 0.10 0.92 6.48 -3.06 -0.02 0.90 16 16 C -0.13 -0.85 6.42 -24.90 -0.16 -1.01 16 17 C -0.09 -0.70 2.81 -88.46 -0.25 -0.95 16 18 H 0.08 0.67 7.97 -51.93 -0.41 0.26 16 19 C -0.10 -0.63 3.19 -89.81 -0.29 -0.91 16 20 C -0.13 -0.76 7.65 -25.83 -0.20 -0.96 16 21 C -0.14 -0.83 8.09 -25.83 -0.21 -1.04 16 22 C -0.14 -0.92 7.24 -25.92 -0.19 -1.11 16 23 C 0.11 1.23 5.98 -2.52 -0.02 1.21 16 24 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 25 H 0.01 0.25 7.58 -51.93 -0.39 -0.14 16 26 H 0.01 0.36 7.19 -51.93 -0.37 -0.01 16 27 H 0.06 1.39 8.10 -51.93 -0.42 0.97 16 28 H 0.06 1.38 8.10 -51.93 -0.42 0.96 16 29 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 30 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 31 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.08 0.48 7.95 -51.93 -0.41 0.06 16 34 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.09 0.57 8.02 -51.93 -0.42 0.15 16 36 H 0.08 0.46 7.98 -51.93 -0.41 0.04 16 37 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 40 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 41 H 0.08 0.58 8.10 -51.93 -0.42 0.16 16 42 H 0.06 0.69 8.04 -51.93 -0.42 0.27 16 43 H 0.08 0.93 8.03 -51.93 -0.42 0.52 16 LS Contribution 342.59 15.07 5.16 5.16 Total: -1.00 -34.15 342.59 -9.33 -43.48 By element: Atomic # 1 Polarization: 3.43 SS G_CDS: -7.91 Total: -4.48 kcal Atomic # 6 Polarization: -11.55 SS G_CDS: -2.21 Total: -13.76 kcal Atomic # 7 Polarization: -36.79 SS G_CDS: 0.21 Total: -36.59 kcal Atomic # 8 Polarization: -11.23 SS G_CDS: 0.09 Total: -11.14 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -4.67 Total: 17.33 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -34.15 -9.33 -43.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594049266.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.511 kcal (2) G-P(sol) polarization free energy of solvation -34.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds