Wall clock time and date at job start Mon Mar 30 2020 06:50:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48498 * 109.47109 * 270.00337 * 3 2 1 5 5 H 1.48507 * 109.46754 * 30.00076 * 3 2 1 6 6 H 1.48498 * 109.47278 * 149.99907 * 3 2 1 7 7 C 1.37884 * 119.99985 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99697 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 180.27663 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 C 1.52994 * 109.47119 * 180.02562 * 10 9 7 12 12 C 1.50708 * 109.47080 * 180.02562 * 11 10 9 13 13 O 1.21277 * 119.99772 * 359.97438 * 12 11 10 14 14 N 1.34771 * 120.00117 * 179.97438 * 12 11 10 15 15 C 1.47028 * 125.64673 * 359.69021 * 14 12 11 16 16 C 1.54321 * 107.27366 * 180.97028 * 15 14 12 17 17 C 1.55151 * 102.86489 * 22.52434 * 16 15 14 18 18 H 1.08998 * 111.00055 * 82.37580 * 17 16 15 19 19 C 1.52999 * 111.00532 * 206.23043 * 17 16 15 20 20 C 1.53782 * 113.61537 * 271.33359 * 19 17 16 21 21 C 1.53954 * 87.02055 * 220.04592 * 20 19 17 22 22 C 1.53777 * 113.61477 * 173.72689 * 19 17 16 23 23 C 1.47421 * 125.64900 * 179.97438 * 14 12 11 24 24 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 25 25 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 26 26 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 27 27 H 1.09004 * 109.47066 * 299.99797 * 10 9 7 28 28 H 1.09000 * 109.47234 * 59.99288 * 10 9 7 29 29 H 1.08998 * 109.46640 * 299.99314 * 11 10 9 30 30 H 1.08994 * 109.47663 * 59.99852 * 11 10 9 31 31 H 1.09000 * 109.88087 * 300.51187 * 15 14 12 32 32 H 1.08998 * 109.88546 * 61.67957 * 15 14 12 33 33 H 1.09000 * 110.91991 * 264.10753 * 16 15 14 34 34 H 1.09002 * 110.74128 * 140.85873 * 16 15 14 35 35 H 1.08999 * 112.84710 * 42.52775 * 19 17 16 36 36 H 1.09000 * 113.61093 * 334.57034 * 20 19 17 37 37 H 1.09000 * 113.61375 * 105.46666 * 20 19 17 38 38 H 1.08994 * 113.53647 * 270.81393 * 21 20 19 39 39 H 1.09001 * 113.73691 * 139.94045 * 21 20 19 40 40 H 1.08997 * 113.61518 * 254.52752 * 22 19 17 41 41 H 1.08994 * 113.61636 * 25.43218 * 22 19 17 42 42 H 1.09003 * 110.36837 * 274.66839 * 23 14 12 43 43 H 1.08996 * 110.36754 * 36.88687 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1941 0.0058 10 6 4.0215 -2.6366 0.0108 11 6 5.5515 -2.6366 0.0178 12 6 6.0538 -4.0574 0.0221 13 8 5.2657 -4.9792 0.0202 14 7 7.3788 -4.3037 0.0280 15 6 8.4396 -3.2857 0.0244 16 6 9.7905 -4.0316 0.0089 17 6 9.4126 -5.4186 -0.5748 18 1 9.3675 -5.3852 -1.6633 19 6 10.3888 -6.4973 -0.1013 20 6 11.6162 -6.6607 -1.0133 21 6 11.4743 -8.1784 -0.7974 22 6 9.9840 -7.9208 -0.5190 23 6 8.0046 -5.6385 0.0332 24 1 -0.4849 0.8400 0.0004 25 1 3.8786 -0.6821 -0.8838 26 1 3.8711 -0.6785 0.8962 27 1 3.6545 -3.1486 0.9003 28 1 3.6618 -3.1522 -0.8796 29 1 5.9188 -2.1245 -0.8715 30 1 5.9108 -2.1211 0.9084 31 1 8.3495 -2.6596 -0.8633 32 1 8.3675 -2.6720 0.9223 33 1 10.1904 -4.1336 1.0178 34 1 10.5051 -3.5226 -0.6380 35 1 10.6392 -6.4070 0.9557 36 1 11.4401 -6.3476 -2.0424 37 1 12.5310 -6.2426 -0.5933 38 1 12.0228 -8.5479 0.0689 39 1 11.6550 -8.7681 -1.6961 40 1 9.5831 -8.5186 0.2994 41 1 9.3609 -7.9529 -1.4128 42 1 8.0862 -6.0153 1.0528 43 1 7.4282 -6.3301 -0.5811 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594049266.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:40 Heat of formation + Delta-G solvation = -60.583697 kcal Electronic energy + Delta-G solvation = -19788.644044 eV Core-core repulsion = 16832.457831 eV Total energy + Delta-G solvation = -2956.186213 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.27018 -39.89595 -37.88331 -36.15606 -34.17434 -32.81564 -30.49136 -29.87395 -26.87765 -26.29578 -25.04059 -23.74057 -21.98995 -21.48735 -20.34064 -20.14572 -18.85888 -18.03529 -17.40734 -16.70770 -16.35279 -16.24290 -15.82711 -15.23621 -14.95888 -14.71831 -14.46627 -14.00316 -13.89575 -13.75239 -13.38066 -13.25811 -13.16932 -12.88148 -12.73504 -12.66874 -12.50859 -11.94774 -11.79302 -11.73663 -11.63540 -11.50405 -11.36843 -11.34000 -11.04673 -10.90683 -10.75896 -10.75317 -9.66352 -8.27981 -6.33900 1.38367 1.42263 1.54458 1.60277 1.99589 2.39208 3.06873 3.31674 3.64139 3.70592 3.77054 3.91252 4.00541 4.10946 4.16727 4.23976 4.29389 4.36572 4.43274 4.61277 4.63051 4.74245 4.84954 4.86723 4.91731 4.92156 4.92890 4.95432 5.02081 5.04273 5.10698 5.14425 5.18763 5.29464 5.39950 5.47581 5.53391 5.58050 5.67089 5.68279 6.29922 6.48438 6.74519 7.15160 7.30365 8.89772 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.048965 B = 0.003035 C = 0.002893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 571.702740 B = 9224.919097 C = 9676.059828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.957 5.957 2 C -0.004 4.004 3 Si 0.963 3.037 4 H -0.263 1.263 5 H -0.285 1.285 6 H -0.235 1.235 7 C -0.541 4.541 8 H 0.018 0.982 9 C -0.007 4.007 10 C -0.081 4.081 11 C -0.123 4.123 12 C 0.521 3.479 13 O -0.593 6.593 14 N -0.623 5.623 15 C 0.088 3.912 16 C -0.115 4.115 17 C -0.081 4.081 18 H 0.083 0.917 19 C -0.095 4.095 20 C -0.128 4.128 21 C -0.143 4.143 22 C -0.148 4.148 23 C 0.106 3.894 24 H 0.267 0.733 25 H 0.030 0.970 26 H 0.031 0.969 27 H 0.035 0.965 28 H 0.035 0.965 29 H 0.115 0.885 30 H 0.114 0.886 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.088 0.912 34 H 0.105 0.895 35 H 0.099 0.901 36 H 0.082 0.918 37 H 0.077 0.923 38 H 0.085 0.915 39 H 0.067 0.933 40 H 0.062 0.938 41 H 0.073 0.927 42 H 0.064 0.936 43 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 32.270 -9.004 -0.769 33.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.200 4.200 3 Si 0.785 3.215 4 H -0.188 1.188 5 H -0.211 1.211 6 H -0.158 1.158 7 C -0.579 4.579 8 H 0.036 0.964 9 C -0.045 4.045 10 C -0.119 4.119 11 C -0.163 4.163 12 C 0.312 3.688 13 O -0.473 6.473 14 N -0.357 5.357 15 C -0.034 4.034 16 C -0.153 4.153 17 C -0.100 4.100 18 H 0.102 0.898 19 C -0.113 4.113 20 C -0.165 4.165 21 C -0.180 4.180 22 C -0.185 4.185 23 C -0.017 4.017 24 H 0.075 0.925 25 H 0.048 0.952 26 H 0.049 0.951 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.133 0.867 30 H 0.132 0.868 31 H 0.100 0.900 32 H 0.100 0.900 33 H 0.107 0.893 34 H 0.123 0.877 35 H 0.117 0.883 36 H 0.100 0.900 37 H 0.096 0.904 38 H 0.103 0.897 39 H 0.086 0.914 40 H 0.081 0.919 41 H 0.091 0.909 42 H 0.083 0.917 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 31.640 -9.367 -0.762 33.006 hybrid contribution -0.985 0.194 -0.006 1.004 sum 30.655 -9.172 -0.768 32.007 Atomic orbital electron populations 1.70109 1.08707 1.28321 1.52628 1.26223 0.95780 1.04195 0.93799 0.85474 0.79664 0.76914 0.79439 1.18828 1.21136 1.15814 1.21551 0.92670 0.92855 1.50836 0.96352 1.19531 0.93504 0.94076 0.97356 1.21052 0.93316 0.97331 1.00192 1.21679 0.96273 0.92211 1.06111 1.20934 0.80842 0.92212 0.74815 1.90674 1.56040 1.48334 1.52299 1.48667 1.04852 1.09407 1.72768 1.22398 0.86485 0.91131 1.03344 1.22711 0.95201 0.94183 1.03210 1.22338 0.91750 0.95744 1.00151 0.89835 1.22488 0.95417 0.93074 1.00338 1.22940 0.97759 0.95953 0.99860 1.22861 0.95998 0.97044 1.02104 1.22981 0.97259 0.96957 1.01349 1.22304 0.93997 0.84617 1.00753 0.92470 0.95180 0.95067 0.94638 0.94613 0.86736 0.86782 0.89975 0.89951 0.89341 0.87682 0.88295 0.89968 0.90380 0.89668 0.91448 0.91948 0.90875 0.91731 0.92952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -62.46 13.96 21.45 0.30 -62.16 16 2 C 0.00 -0.25 5.47 84.66 0.46 0.21 16 3 Si 0.96 44.28 27.47 68.60 1.88 46.17 16 4 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 5 H -0.29 -12.91 7.11 99.48 0.71 -12.21 16 6 H -0.24 -9.62 6.54 99.48 0.65 -8.96 16 7 C -0.54 -33.14 9.66 25.60 0.25 -32.90 16 8 H 0.02 1.26 7.99 -2.91 -0.02 1.24 16 9 C -0.01 -0.35 4.04 29.85 0.12 -0.23 16 10 C -0.08 -3.53 4.44 30.59 0.14 -3.39 16 11 C -0.12 -3.84 4.89 29.85 0.15 -3.69 16 12 C 0.52 17.48 7.85 87.66 0.69 18.17 16 13 O -0.59 -26.02 16.24 -3.02 -0.05 -26.07 16 14 N -0.62 -15.14 3.33 -811.75 -2.70 -17.84 16 15 C 0.09 1.29 6.48 86.73 0.56 1.86 16 16 C -0.12 -1.10 6.42 31.78 0.20 -0.90 16 17 C -0.08 -1.05 2.81 -9.39 -0.03 -1.07 16 18 H 0.08 1.14 7.97 -2.39 -0.02 1.12 16 19 C -0.09 -0.99 3.19 -10.27 -0.03 -1.02 16 20 C -0.13 -1.08 7.65 31.18 0.24 -0.85 16 21 C -0.14 -1.38 8.09 31.18 0.25 -1.13 16 22 C -0.15 -1.84 7.24 31.12 0.23 -1.62 16 23 C 0.11 2.25 5.98 86.87 0.52 2.77 16 24 H 0.27 16.07 8.31 -92.71 -0.77 15.30 16 25 H 0.03 1.33 7.58 -2.38 -0.02 1.31 16 26 H 0.03 1.40 7.19 -2.39 -0.02 1.38 16 27 H 0.03 1.68 8.10 -2.38 -0.02 1.66 16 28 H 0.03 1.69 8.10 -2.39 -0.02 1.67 16 29 H 0.11 2.95 8.14 -2.39 -0.02 2.93 16 30 H 0.11 2.96 8.14 -2.39 -0.02 2.94 16 31 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.09 0.69 7.95 -2.39 -0.02 0.68 16 34 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 35 H 0.10 0.94 8.02 -2.39 -0.02 0.92 16 36 H 0.08 0.70 7.98 -2.39 -0.02 0.68 16 37 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 38 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 39 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 40 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 41 H 0.07 1.04 8.10 -2.39 -0.02 1.02 16 42 H 0.06 1.36 8.04 -2.39 -0.02 1.35 16 43 H 0.05 1.35 8.03 -2.39 -0.02 1.33 16 Total: -1.00 -78.89 342.59 4.07 -74.82 By element: Atomic # 1 Polarization: 7.98 SS G_CDS: 0.89 Total: 8.87 kcal Atomic # 6 Polarization: -27.53 SS G_CDS: 3.74 Total: -23.79 kcal Atomic # 7 Polarization: -77.59 SS G_CDS: -2.40 Total: -80.00 kcal Atomic # 8 Polarization: -26.02 SS G_CDS: -0.05 Total: -26.07 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 1.88 Total: 46.17 kcal Total: -78.89 4.07 -74.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594049266.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.239 kcal (2) G-P(sol) polarization free energy of solvation -78.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds