Wall clock time and date at job start Mon Mar 30 2020 07:27:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86793 * 120.00144 * 2 1 4 4 H 1.48499 * 109.47471 * 0.02562 * 3 2 1 5 5 H 1.48507 * 109.47101 * 120.00395 * 3 2 1 6 6 H 1.48507 * 109.47317 * 240.00129 * 3 2 1 7 7 C 1.37877 * 119.99847 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99938 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99690 * 359.97438 * 7 2 1 10 10 C 1.53005 * 109.46854 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47325 * 179.97438 * 10 9 7 12 12 C 1.50695 * 109.47611 * 180.02562 * 11 10 9 13 13 O 1.21284 * 119.99688 * 0.02562 * 12 11 10 14 14 N 1.34776 * 120.00312 * 180.02562 * 12 11 10 15 15 C 1.47105 * 125.81486 * 355.47576 * 14 12 11 16 16 C 1.53991 * 107.66100 * 182.17721 * 15 14 12 17 17 C 1.55207 * 103.91260 * 17.83517 * 16 15 14 18 18 H 1.09001 * 111.61147 * 210.65293 * 17 16 15 19 19 C 1.52931 * 107.50175 * 88.18774 * 17 16 15 20 20 C 1.54243 * 108.63543 * 192.88283 * 19 17 16 21 21 C 1.52599 * 109.63186 * 63.46591 * 20 19 17 22 22 C 1.51522 * 111.06932 * 300.76529 * 21 20 19 23 23 C 1.46455 * 125.81366 * 175.17308 * 14 12 11 24 24 H 1.08994 * 106.87617 * 272.32149 * 23 14 12 25 25 H 0.97004 * 120.00158 * 359.97438 * 1 2 3 26 26 H 1.08999 * 109.47496 * 299.99934 * 9 7 2 27 27 H 1.09002 * 109.47460 * 60.00552 * 9 7 2 28 28 H 1.08999 * 109.47535 * 299.99963 * 10 9 7 29 29 H 1.09001 * 109.46977 * 60.00419 * 10 9 7 30 30 H 1.08999 * 109.47312 * 300.00221 * 11 10 9 31 31 H 1.09007 * 109.46862 * 59.99894 * 11 10 9 32 32 H 1.08995 * 109.82430 * 301.71548 * 15 14 12 33 33 H 1.09007 * 109.81449 * 62.64615 * 15 14 12 34 34 H 1.09000 * 110.54016 * 136.44302 * 16 15 14 35 35 H 1.09004 * 110.54034 * 259.23146 * 16 15 14 36 36 H 1.09001 * 109.47565 * 312.12222 * 19 17 16 37 37 H 1.09002 * 109.47707 * 72.13724 * 19 17 16 38 38 H 1.09001 * 109.16536 * 303.42507 * 20 19 17 39 39 H 1.09002 * 109.29795 * 183.59062 * 20 19 17 40 40 H 1.09001 * 109.15695 * 180.35624 * 21 20 19 41 41 H 1.08996 * 109.15652 * 61.17546 * 21 20 19 42 42 H 1.09003 * 108.36749 * 286.07335 * 22 21 20 43 43 H 1.08997 * 108.36764 * 168.95051 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 1.2842 2.7464 0.0006 5 1 3.1030 1.6962 1.2125 6 1 3.1029 1.6964 -1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 6 2.2451 -3.6621 -0.0018 11 6 1.4801 -4.9871 -0.0012 12 6 2.4593 -6.1326 -0.0018 13 8 3.6517 -5.9110 -0.0022 14 7 2.0100 -7.4033 -0.0019 15 6 0.6019 -7.8184 0.0926 16 6 0.5689 -9.3579 0.1101 17 6 2.0213 -9.7581 0.4832 18 1 2.3021 -10.7122 0.0370 19 6 2.1069 -9.8085 2.0093 20 6 3.5926 -9.8806 2.4175 21 6 4.3086 -8.6082 1.9738 22 6 4.2127 -8.4243 0.4729 23 6 2.8400 -8.6057 -0.1025 24 1 2.9709 -8.8119 -1.1647 25 1 -0.4850 0.8401 0.0004 26 1 0.6245 -2.5571 0.8897 27 1 0.6239 -2.5567 -0.8903 28 1 2.8711 -3.6041 -0.8922 29 1 2.8724 -3.6048 0.8878 30 1 0.8544 -5.0450 0.8895 31 1 0.8524 -5.0447 -0.8905 32 1 0.1626 -7.4290 1.0109 33 1 0.0484 -7.4467 -0.7697 34 1 -0.1322 -9.7169 0.8635 35 1 0.3062 -9.7460 -0.8741 36 1 1.6624 -8.9057 2.4282 37 1 1.5677 -10.6824 2.3749 38 1 4.0535 -10.7448 1.9392 39 1 3.6641 -9.9813 3.5005 40 1 5.3584 -8.6701 2.2604 41 1 3.8535 -7.7505 2.4691 42 1 4.8823 -9.1399 -0.0043 43 1 4.5582 -7.4202 0.2271 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594053822.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:27:07 Heat of formation + Delta-G solvation = -63.947565 kcal Electronic energy + Delta-G solvation = -20678.837743 eV Core-core repulsion = 17722.505662 eV Total energy + Delta-G solvation = -2956.332081 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.81065 -38.16578 -35.34193 -34.17661 -32.49266 -32.04620 -30.19632 -28.52184 -27.60351 -24.24474 -23.24897 -22.87286 -21.50249 -20.49121 -19.44426 -18.38893 -16.58284 -16.48958 -16.05901 -15.18050 -15.14327 -14.76766 -14.46006 -14.41198 -13.94298 -13.33089 -13.24754 -12.74263 -12.41727 -12.31700 -12.16829 -11.98299 -11.89146 -11.74792 -11.61538 -11.30989 -11.02374 -10.76259 -10.71447 -10.57216 -10.51034 -10.32882 -10.19995 -9.63451 -9.35671 -9.11010 -8.80967 -8.49396 -8.29403 -5.95305 -3.96657 2.92952 3.11439 3.38258 3.41505 3.45505 4.21925 4.35970 4.49247 4.51335 4.82783 4.87392 5.02147 5.07324 5.13969 5.19156 5.34018 5.36422 5.40655 5.49683 5.54490 5.58164 5.65782 5.70470 5.73687 5.79115 5.85866 5.92576 6.01307 6.11221 6.14798 6.26305 6.29407 6.39314 6.76347 6.78568 6.97587 7.19295 7.67471 7.74166 7.86667 8.05535 8.48794 8.49894 9.10200 9.67090 11.16205 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.034723 B = 0.003722 C = 0.003525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.191257 B = 7521.676232 C = 7941.246729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.288 1.288 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.518 4.518 8 H 0.055 0.945 9 C 0.021 3.979 10 C -0.094 4.094 11 C -0.134 4.134 12 C 0.532 3.468 13 O -0.531 6.531 14 N -0.619 5.619 15 C 0.101 3.899 16 C -0.130 4.130 17 C -0.095 4.095 18 H 0.090 0.910 19 C -0.110 4.110 20 C -0.119 4.119 21 C -0.108 4.108 22 C -0.158 4.158 23 C 0.152 3.848 24 H 0.052 0.948 25 H 0.260 0.740 26 H 0.015 0.985 27 H 0.015 0.985 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.082 0.918 35 H 0.074 0.926 36 H 0.064 0.936 37 H 0.064 0.936 38 H 0.059 0.941 39 H 0.059 0.941 40 H 0.059 0.941 41 H 0.057 0.943 42 H 0.056 0.944 43 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.154 -23.570 2.021 23.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.213 1.213 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.556 4.556 8 H 0.074 0.926 9 C -0.016 4.016 10 C -0.133 4.133 11 C -0.174 4.174 12 C 0.324 3.676 13 O -0.408 6.408 14 N -0.355 5.355 15 C -0.022 4.022 16 C -0.168 4.168 17 C -0.114 4.114 18 H 0.109 0.891 19 C -0.148 4.148 20 C -0.157 4.157 21 C -0.145 4.145 22 C -0.195 4.195 23 C 0.049 3.951 24 H 0.070 0.930 25 H 0.070 0.930 26 H 0.033 0.967 27 H 0.033 0.967 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.104 0.896 31 H 0.105 0.895 32 H 0.087 0.913 33 H 0.088 0.912 34 H 0.100 0.900 35 H 0.093 0.907 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.078 0.922 39 H 0.077 0.923 40 H 0.078 0.922 41 H 0.076 0.924 42 H 0.075 0.925 43 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 1.669 -23.222 2.002 23.368 hybrid contribution 0.220 0.816 -0.051 0.846 sum 1.889 -22.407 1.951 22.571 Atomic orbital electron populations 1.69954 1.06035 1.26619 1.51177 1.25014 0.94851 0.99217 0.95395 0.86655 0.79573 0.83080 0.78683 1.21340 1.20234 1.20230 1.21239 0.93151 0.91029 1.50208 0.92634 1.19123 0.93963 0.91453 0.97070 1.21449 0.98630 0.91520 1.01652 1.21843 0.98098 0.93948 1.03512 1.20918 0.90026 0.82188 0.74513 1.90468 1.17045 1.83336 1.49962 1.48375 1.07401 1.05334 1.74368 1.21933 0.83152 0.95060 1.02057 1.22706 0.97142 0.94474 1.02505 1.22029 0.94637 0.98068 0.96702 0.89145 1.21771 0.96766 1.01890 0.94339 1.21662 0.95423 0.98272 1.00329 1.20982 1.00009 0.97437 0.96092 1.21342 0.95147 1.07152 0.95889 1.20481 0.91325 0.84209 0.99095 0.93002 0.93035 0.96656 0.96654 0.92705 0.92720 0.89612 0.89516 0.91311 0.91152 0.89962 0.90739 0.91738 0.91735 0.92246 0.92262 0.92188 0.92419 0.92521 0.86091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.32 13.29 55.43 0.74 -26.58 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 22.20 29.54 -169.99 -5.02 17.18 16 4 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 5 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 7 C -0.52 -15.16 9.11 -34.44 -0.31 -15.48 16 8 H 0.06 1.60 7.74 -52.49 -0.41 1.20 16 9 C 0.02 0.55 4.97 -27.88 -0.14 0.41 16 10 C -0.09 -2.08 4.44 -26.73 -0.12 -2.20 16 11 C -0.13 -2.33 4.91 -27.89 -0.14 -2.46 16 12 C 0.53 8.97 7.72 -10.99 -0.08 8.89 16 13 O -0.53 -10.56 13.18 5.55 0.07 -10.48 16 14 N -0.62 -8.18 3.29 -166.79 -0.55 -8.72 16 15 C 0.10 1.01 6.22 -3.19 -0.02 0.99 16 16 C -0.13 -0.98 6.33 -25.05 -0.16 -1.14 16 17 C -0.10 -0.81 3.29 -89.48 -0.29 -1.11 16 18 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 19 C -0.11 -0.94 5.14 -26.12 -0.13 -1.08 16 20 C -0.12 -1.08 5.92 -26.29 -0.16 -1.24 16 21 C -0.11 -1.24 5.94 -27.68 -0.16 -1.41 16 22 C -0.16 -1.99 5.17 -29.00 -0.15 -2.14 16 23 C 0.15 1.78 2.84 -69.47 -0.20 1.58 16 24 H 0.05 0.61 8.12 -51.93 -0.42 0.19 16 25 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 26 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.05 1.25 8.10 -51.93 -0.42 0.83 16 29 H 0.05 1.25 8.10 -51.93 -0.42 0.83 16 30 H 0.09 1.38 8.14 -51.93 -0.42 0.95 16 31 H 0.09 1.39 8.14 -51.92 -0.42 0.97 16 32 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.07 0.66 8.14 -51.92 -0.42 0.24 16 34 H 0.08 0.51 7.85 -51.93 -0.41 0.10 16 35 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.06 0.64 7.79 -51.93 -0.40 0.24 16 37 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.12 1.96 4.64 -52.21 -0.24 1.72 16 LS Contribution 332.73 15.07 5.01 5.01 Total: -1.00 -32.25 332.73 -9.69 -41.93 By element: Atomic # 1 Polarization: 4.27 SS G_CDS: -7.78 Total: -3.50 kcal Atomic # 6 Polarization: -12.68 SS G_CDS: -2.17 Total: -14.84 kcal Atomic # 7 Polarization: -35.49 SS G_CDS: 0.19 Total: -35.30 kcal Atomic # 8 Polarization: -10.56 SS G_CDS: 0.07 Total: -10.48 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -32.25 -9.69 -41.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594053822.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.013 kcal (2) G-P(sol) polarization free energy of solvation -32.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds