Wall clock time and date at job start Mon Mar 30 2020 07:27:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86793 * 120.00144 * 2 1 4 4 H 1.48499 * 109.47471 * 0.02562 * 3 2 1 5 5 H 1.48507 * 109.47101 * 120.00395 * 3 2 1 6 6 H 1.48507 * 109.47317 * 240.00129 * 3 2 1 7 7 C 1.37877 * 119.99847 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99938 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99690 * 359.97438 * 7 2 1 10 10 C 1.53005 * 109.46854 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47325 * 179.97438 * 10 9 7 12 12 C 1.50695 * 109.47611 * 180.02562 * 11 10 9 13 13 O 1.21284 * 119.99688 * 0.02562 * 12 11 10 14 14 N 1.34776 * 120.00312 * 180.02562 * 12 11 10 15 15 C 1.47105 * 125.81486 * 355.47576 * 14 12 11 16 16 C 1.53991 * 107.66100 * 182.17721 * 15 14 12 17 17 C 1.55207 * 103.91260 * 17.83517 * 16 15 14 18 18 H 1.09001 * 111.61147 * 210.65293 * 17 16 15 19 19 C 1.52931 * 107.50175 * 88.18774 * 17 16 15 20 20 C 1.54243 * 108.63543 * 192.88283 * 19 17 16 21 21 C 1.52599 * 109.63186 * 63.46591 * 20 19 17 22 22 C 1.51522 * 111.06932 * 300.76529 * 21 20 19 23 23 C 1.46455 * 125.81366 * 175.17308 * 14 12 11 24 24 H 1.08994 * 106.87617 * 272.32149 * 23 14 12 25 25 H 0.97004 * 120.00158 * 359.97438 * 1 2 3 26 26 H 1.08999 * 109.47496 * 299.99934 * 9 7 2 27 27 H 1.09002 * 109.47460 * 60.00552 * 9 7 2 28 28 H 1.08999 * 109.47535 * 299.99963 * 10 9 7 29 29 H 1.09001 * 109.46977 * 60.00419 * 10 9 7 30 30 H 1.08999 * 109.47312 * 300.00221 * 11 10 9 31 31 H 1.09007 * 109.46862 * 59.99894 * 11 10 9 32 32 H 1.08995 * 109.82430 * 301.71548 * 15 14 12 33 33 H 1.09007 * 109.81449 * 62.64615 * 15 14 12 34 34 H 1.09000 * 110.54016 * 136.44302 * 16 15 14 35 35 H 1.09004 * 110.54034 * 259.23146 * 16 15 14 36 36 H 1.09001 * 109.47565 * 312.12222 * 19 17 16 37 37 H 1.09002 * 109.47707 * 72.13724 * 19 17 16 38 38 H 1.09001 * 109.16536 * 303.42507 * 20 19 17 39 39 H 1.09002 * 109.29795 * 183.59062 * 20 19 17 40 40 H 1.09001 * 109.15695 * 180.35624 * 21 20 19 41 41 H 1.08996 * 109.15652 * 61.17546 * 21 20 19 42 42 H 1.09003 * 108.36749 * 286.07335 * 22 21 20 43 43 H 1.08997 * 108.36764 * 168.95051 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 1.2842 2.7464 0.0006 5 1 3.1030 1.6962 1.2125 6 1 3.1029 1.6964 -1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 6 2.2451 -3.6621 -0.0018 11 6 1.4801 -4.9871 -0.0012 12 6 2.4593 -6.1326 -0.0018 13 8 3.6517 -5.9110 -0.0022 14 7 2.0100 -7.4033 -0.0019 15 6 0.6019 -7.8184 0.0926 16 6 0.5689 -9.3579 0.1101 17 6 2.0213 -9.7581 0.4832 18 1 2.3021 -10.7122 0.0370 19 6 2.1069 -9.8085 2.0093 20 6 3.5926 -9.8806 2.4175 21 6 4.3086 -8.6082 1.9738 22 6 4.2127 -8.4243 0.4729 23 6 2.8400 -8.6057 -0.1025 24 1 2.9709 -8.8119 -1.1647 25 1 -0.4850 0.8401 0.0004 26 1 0.6245 -2.5571 0.8897 27 1 0.6239 -2.5567 -0.8903 28 1 2.8711 -3.6041 -0.8922 29 1 2.8724 -3.6048 0.8878 30 1 0.8544 -5.0450 0.8895 31 1 0.8524 -5.0447 -0.8905 32 1 0.1626 -7.4290 1.0109 33 1 0.0484 -7.4467 -0.7697 34 1 -0.1322 -9.7169 0.8635 35 1 0.3062 -9.7460 -0.8741 36 1 1.6624 -8.9057 2.4282 37 1 1.5677 -10.6824 2.3749 38 1 4.0535 -10.7448 1.9392 39 1 3.6641 -9.9813 3.5005 40 1 5.3584 -8.6701 2.2604 41 1 3.8535 -7.7505 2.4691 42 1 4.8823 -9.1399 -0.0043 43 1 4.5582 -7.4202 0.2271 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594053822.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:27:07 Heat of formation + Delta-G solvation = -82.132059 kcal Electronic energy + Delta-G solvation = -20679.626282 eV Core-core repulsion = 17722.505662 eV Total energy + Delta-G solvation = -2957.120620 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.81286 -39.34654 -36.29784 -36.10307 -34.03731 -33.38999 -31.30907 -29.41707 -29.26936 -25.99566 -24.17343 -24.01402 -22.31618 -22.13345 -20.62977 -19.51188 -18.45664 -17.58658 -17.43466 -16.52423 -16.39616 -16.19704 -15.65260 -15.37840 -15.01264 -14.73682 -14.45187 -14.09154 -13.81688 -13.62108 -13.35126 -13.13668 -13.04626 -12.78837 -12.64296 -12.59516 -12.50592 -12.43855 -12.37969 -11.81262 -11.58165 -11.52344 -11.42544 -11.26805 -11.13800 -10.92021 -10.55178 -10.11908 -9.55534 -8.20969 -6.31325 1.38800 1.41956 1.50084 1.62306 2.02771 2.41169 3.11783 3.41076 3.60305 3.75270 3.89096 4.06868 4.14225 4.16720 4.21719 4.23370 4.38007 4.44855 4.51594 4.57179 4.64881 4.75069 4.80230 4.84324 4.92434 5.03620 5.05633 5.06858 5.10658 5.15511 5.18599 5.24737 5.31375 5.34873 5.39760 5.51808 5.53788 5.72766 5.79151 5.84516 6.25832 6.54868 6.83384 7.22422 7.37277 8.90490 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.034723 B = 0.003722 C = 0.003525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.191257 B = 7521.676232 C = 7941.246729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.004 3.996 3 Si 0.962 3.038 4 H -0.277 1.277 5 H -0.269 1.269 6 H -0.269 1.269 7 C -0.550 4.550 8 H 0.051 0.949 9 C 0.028 3.972 10 C -0.080 4.080 11 C -0.125 4.125 12 C 0.528 3.472 13 O -0.572 6.572 14 N -0.613 5.613 15 C 0.088 3.912 16 C -0.120 4.120 17 C -0.088 4.088 18 H 0.115 0.885 19 C -0.108 4.108 20 C -0.115 4.115 21 C -0.106 4.106 22 C -0.157 4.157 23 C 0.143 3.857 24 H 0.052 0.948 25 H 0.265 0.735 26 H 0.000 1.000 27 H 0.000 1.000 28 H 0.040 0.960 29 H 0.039 0.961 30 H 0.100 0.900 31 H 0.102 0.898 32 H 0.072 0.928 33 H 0.078 0.922 34 H 0.103 0.897 35 H 0.090 0.910 36 H 0.046 0.954 37 H 0.091 0.909 38 H 0.075 0.925 39 H 0.065 0.935 40 H 0.060 0.940 41 H 0.027 0.973 42 H 0.071 0.929 43 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.475 -25.558 2.090 25.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.194 4.194 3 Si 0.787 3.213 4 H -0.202 1.202 5 H -0.194 1.194 6 H -0.194 1.194 7 C -0.587 4.587 8 H 0.069 0.931 9 C -0.010 4.010 10 C -0.118 4.118 11 C -0.164 4.164 12 C 0.319 3.681 13 O -0.452 6.452 14 N -0.347 5.347 15 C -0.034 4.034 16 C -0.157 4.157 17 C -0.107 4.107 18 H 0.133 0.867 19 C -0.146 4.146 20 C -0.153 4.153 21 C -0.144 4.144 22 C -0.195 4.195 23 C 0.040 3.960 24 H 0.070 0.930 25 H 0.074 0.926 26 H 0.018 0.982 27 H 0.019 0.981 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.118 0.882 31 H 0.120 0.880 32 H 0.091 0.909 33 H 0.097 0.903 34 H 0.122 0.878 35 H 0.109 0.891 36 H 0.065 0.935 37 H 0.109 0.891 38 H 0.094 0.906 39 H 0.084 0.916 40 H 0.079 0.921 41 H 0.046 0.954 42 H 0.089 0.911 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 0.962 -25.255 2.072 25.358 hybrid contribution 0.427 1.410 -0.076 1.476 sum 1.389 -23.845 1.995 23.968 Atomic orbital electron populations 1.70061 1.07516 1.27894 1.51431 1.25908 0.95836 1.03069 0.94585 0.85546 0.78398 0.78322 0.79066 1.20228 1.19441 1.19410 1.21651 0.93325 0.92778 1.50989 0.93076 1.19002 0.94146 0.92382 0.95425 1.21146 0.97599 0.92840 1.00209 1.21645 0.97888 0.91922 1.04968 1.20680 0.89160 0.83416 0.74871 1.90483 1.18380 1.84268 1.52114 1.48369 1.09435 1.04605 1.72300 1.22277 0.81063 0.97386 1.02658 1.22723 0.96785 0.92029 1.04193 1.22057 0.94528 0.97454 0.96643 0.86666 1.21793 0.96298 1.02215 0.94274 1.21641 0.95759 0.97000 1.00888 1.20957 1.00290 0.97928 0.95177 1.21248 0.96293 1.05162 0.96776 1.20721 0.91196 0.84651 0.99420 0.93005 0.92611 0.98190 0.98140 0.94076 0.94190 0.88198 0.87975 0.90942 0.90331 0.87835 0.89138 0.93520 0.89091 0.90611 0.91609 0.92140 0.95389 0.91081 0.89993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.05 13.29 21.45 0.28 -56.77 16 2 C 0.00 0.24 5.46 84.65 0.46 0.70 16 3 Si 0.96 45.74 29.54 68.60 2.03 47.76 16 4 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 5 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 6 H -0.27 -12.39 7.11 99.48 0.71 -11.69 16 7 C -0.55 -32.98 9.11 25.60 0.23 -32.75 16 8 H 0.05 3.03 7.74 -2.91 -0.02 3.01 16 9 C 0.03 1.50 4.97 29.85 0.15 1.65 16 10 C -0.08 -3.67 4.44 30.60 0.14 -3.53 16 11 C -0.12 -4.39 4.91 29.85 0.15 -4.24 16 12 C 0.53 18.25 7.72 87.66 0.68 18.93 16 13 O -0.57 -23.98 13.18 -3.04 -0.04 -24.02 16 14 N -0.61 -15.84 3.29 -799.98 -2.63 -18.47 16 15 C 0.09 1.57 6.22 86.60 0.54 2.10 16 16 C -0.12 -1.34 6.33 31.69 0.20 -1.14 16 17 C -0.09 -1.20 3.29 -10.06 -0.03 -1.24 16 18 H 0.12 1.11 8.14 -2.39 -0.02 1.09 16 19 C -0.11 -1.52 5.14 30.99 0.16 -1.36 16 20 C -0.12 -1.84 5.92 30.88 0.18 -1.66 16 21 C -0.11 -2.44 5.94 29.98 0.18 -2.27 16 22 C -0.16 -3.98 5.17 29.13 0.15 -3.83 16 23 C 0.14 3.15 2.84 44.02 0.13 3.28 16 24 H 0.05 1.15 8.12 -2.39 -0.02 1.13 16 25 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 26 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16 27 H 0.00 0.01 8.14 -2.39 -0.02 -0.01 16 28 H 0.04 1.96 8.10 -2.39 -0.02 1.95 16 29 H 0.04 1.92 8.10 -2.39 -0.02 1.90 16 30 H 0.10 3.21 8.14 -2.39 -0.02 3.19 16 31 H 0.10 3.26 8.14 -2.38 -0.02 3.24 16 32 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.08 1.29 8.14 -2.38 -0.02 1.27 16 34 H 0.10 0.80 7.85 -2.39 -0.02 0.78 16 35 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.05 0.83 7.79 -2.39 -0.02 0.81 16 37 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 38 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 40 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 41 H 0.03 0.79 8.14 -2.39 -0.02 0.77 16 42 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 43 H 0.08 2.81 4.64 -6.76 -0.03 2.78 16 Total: -1.00 -72.10 332.73 3.87 -68.22 By element: Atomic # 1 Polarization: 7.69 SS G_CDS: 0.93 Total: 8.62 kcal Atomic # 6 Polarization: -28.66 SS G_CDS: 3.31 Total: -25.35 kcal Atomic # 7 Polarization: -72.89 SS G_CDS: -2.35 Total: -75.24 kcal Atomic # 8 Polarization: -23.98 SS G_CDS: -0.04 Total: -24.02 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 2.03 Total: 47.76 kcal Total: -72.10 3.87 -68.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594053822.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.909 kcal (2) G-P(sol) polarization free energy of solvation -72.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds