Wall clock time and date at job start Mon Mar 30 2020 07:52:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86793 * 120.00053 * 2 1 4 4 H 1.48496 * 109.47740 * 270.00204 * 3 2 1 5 5 H 1.48504 * 109.47189 * 30.00506 * 3 2 1 6 6 H 1.48502 * 109.47428 * 150.00072 * 3 2 1 7 7 C 1.37881 * 120.00316 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99609 * 359.97438 * 7 2 1 9 9 C 1.50694 * 120.00557 * 180.02562 * 7 2 1 10 10 C 1.52999 * 109.47640 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47434 * 179.97438 * 10 9 7 12 12 C 1.50700 * 109.47146 * 180.02562 * 11 10 9 13 13 O 1.21281 * 120.00077 * 0.02562 * 12 11 10 14 14 N 1.34773 * 120.00037 * 179.97438 * 12 11 10 15 15 C 1.47431 * 125.64649 * 0.02632 * 14 12 11 16 16 C 1.54906 * 104.83070 * 204.08807 * 15 14 12 17 17 C 1.55161 * 101.58356 * 322.99032 * 16 15 14 18 18 C 1.47018 * 125.65096 * 179.71303 * 14 12 11 19 19 H 1.09002 * 109.87792 * 59.56277 * 18 14 12 20 20 C 1.53002 * 109.88412 * 298.40132 * 18 14 12 21 21 C 1.53773 * 113.61192 * 284.32931 * 20 18 14 22 22 C 1.53778 * 87.08135 * 220.01668 * 21 20 18 23 23 C 1.53775 * 113.61152 * 186.83281 * 20 18 14 24 24 H 0.96997 * 119.99737 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.47290 * 59.98890 * 9 7 2 26 26 H 1.09004 * 109.46859 * 299.99857 * 9 7 2 27 27 H 1.09004 * 109.46786 * 59.99844 * 10 9 7 28 28 H 1.08998 * 109.46803 * 299.99916 * 10 9 7 29 29 H 1.08992 * 109.46862 * 59.99937 * 11 10 9 30 30 H 1.09001 * 109.46588 * 300.00277 * 11 10 9 31 31 H 1.09000 * 110.36588 * 322.92873 * 15 14 12 32 32 H 1.09008 * 110.36375 * 85.14335 * 15 14 12 33 33 H 1.08996 * 111.00596 * 81.06740 * 16 15 14 34 34 H 1.09004 * 111.00608 * 204.87920 * 16 15 14 35 35 H 1.08994 * 110.71754 * 153.86264 * 17 16 15 36 36 H 1.08994 * 110.71996 * 276.96310 * 17 16 15 37 37 H 1.09004 * 112.84860 * 55.63623 * 20 18 14 38 38 H 1.09003 * 113.62025 * 334.56828 * 21 20 18 39 39 H 1.09001 * 113.61630 * 105.47114 * 21 20 18 40 40 H 1.08994 * 113.61652 * 270.88591 * 22 21 20 41 41 H 1.09003 * 113.61297 * 139.98330 * 22 21 20 42 42 H 1.09001 * 113.61563 * 254.52480 * 23 20 18 43 43 H 1.08994 * 113.61839 * 25.34927 * 23 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5116 -1.1941 0.0000 10 6 4.0216 -2.6366 -0.0001 11 6 5.5516 -2.6366 -0.0001 12 6 6.0539 -4.0574 -0.0009 13 8 5.2658 -4.9792 -0.0018 14 7 7.3790 -4.3037 -0.0016 15 6 8.4426 -3.2828 -0.0011 16 6 9.6751 -3.9940 -0.6134 17 6 9.5317 -5.4242 -0.0289 18 6 8.0031 -5.6348 0.0036 19 1 7.6891 -6.1948 -0.8772 20 6 7.6062 -6.3907 1.2732 21 6 8.3444 -5.9088 2.5332 22 6 8.4435 -7.3871 2.9450 23 6 8.3429 -7.7290 1.4490 24 1 -0.4849 0.8400 0.0004 25 1 3.8746 -0.6807 0.8904 26 1 3.8752 -0.6797 -0.8895 27 1 3.6586 -3.1502 -0.8904 28 1 3.6580 -3.1506 0.8897 29 1 5.9149 -2.1228 0.8898 30 1 5.9148 -2.1226 -0.8901 31 1 8.1515 -2.4314 -0.6163 32 1 8.6568 -2.9585 1.0173 33 1 9.6169 -4.0090 -1.7017 34 1 10.6016 -3.5263 -0.2802 35 1 10.0104 -6.1563 -0.6792 36 1 9.9483 -5.4732 0.9771 37 1 6.5263 -6.4667 1.4004 38 1 9.3099 -5.4480 2.3243 39 1 7.7242 -5.3104 3.2006 40 1 7.5927 -7.7353 3.5306 41 1 9.4023 -7.6530 3.3901 42 1 7.7215 -8.6001 1.2411 43 1 9.3072 -7.7664 0.9425 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594277278.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:52:06 Heat of formation + Delta-G solvation = -30.129061 kcal Electronic energy + Delta-G solvation = -20469.234411 eV Core-core repulsion = 17514.368811 eV Total energy + Delta-G solvation = -2954.865601 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.69748 -38.61161 -36.79481 -34.27212 -32.17610 -31.56729 -29.90885 -28.17241 -25.82264 -25.22519 -24.03894 -22.45810 -21.69221 -20.09574 -19.13582 -18.49688 -16.86823 -16.82171 -16.52562 -15.84407 -15.26903 -14.86640 -14.23998 -14.01331 -13.71947 -13.58943 -13.25464 -12.88795 -12.85298 -12.61140 -12.43634 -11.96736 -11.79786 -11.62074 -11.44958 -11.35280 -11.07097 -10.91348 -10.76563 -10.68348 -10.45927 -10.21617 -9.94712 -9.77770 -9.66436 -9.33127 -9.09571 -8.54270 -8.48761 -5.98508 -3.96045 2.91330 3.04098 3.33057 3.40020 3.43185 4.24320 4.31113 4.49102 4.49455 4.56810 4.63355 4.66427 4.76893 5.02989 5.10058 5.12208 5.34423 5.34890 5.39688 5.47191 5.51791 5.59228 5.60846 5.62899 5.65105 5.74249 5.75515 5.79879 5.83701 6.03313 6.08046 6.15651 6.32998 6.50597 6.60118 6.73952 6.95637 7.40433 7.48928 7.63126 7.85315 8.43974 8.61972 9.08443 9.63625 11.15270 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.030063 B = 0.003857 C = 0.003624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.143061 B = 7258.446273 C = 7724.067634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.064 3.936 3 Si 0.881 3.119 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.266 1.266 7 C -0.518 4.518 8 H 0.072 0.928 9 C -0.014 4.014 10 C -0.087 4.087 11 C -0.136 4.136 12 C 0.529 3.471 13 O -0.533 6.533 14 N -0.621 5.621 15 C 0.099 3.901 16 C -0.133 4.133 17 C -0.138 4.138 18 C 0.147 3.853 19 H 0.072 0.928 20 C -0.119 4.119 21 C -0.141 4.141 22 C -0.141 4.141 23 C -0.135 4.135 24 H 0.262 0.738 25 H 0.015 0.985 26 H 0.010 0.990 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.078 0.922 32 H 0.067 0.933 33 H 0.075 0.925 34 H 0.082 0.918 35 H 0.078 0.922 36 H 0.087 0.913 37 H 0.102 0.898 38 H 0.087 0.913 39 H 0.063 0.937 40 H 0.078 0.922 41 H 0.064 0.936 42 H 0.066 0.934 43 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.305 -10.618 1.958 27.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.137 4.137 3 Si 0.709 3.291 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.191 1.191 7 C -0.556 4.556 8 H 0.091 0.909 9 C -0.051 4.051 10 C -0.125 4.125 11 C -0.176 4.176 12 C 0.319 3.681 13 O -0.409 6.409 14 N -0.357 5.357 15 C -0.024 4.024 16 C -0.171 4.171 17 C -0.175 4.175 18 C 0.044 3.956 19 H 0.090 0.910 20 C -0.138 4.138 21 C -0.178 4.178 22 C -0.178 4.178 23 C -0.173 4.173 24 H 0.072 0.928 25 H 0.033 0.967 26 H 0.029 0.971 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.104 0.896 30 H 0.104 0.896 31 H 0.096 0.904 32 H 0.085 0.915 33 H 0.094 0.906 34 H 0.100 0.900 35 H 0.096 0.904 36 H 0.105 0.895 37 H 0.120 0.880 38 H 0.105 0.895 39 H 0.082 0.918 40 H 0.097 0.903 41 H 0.083 0.917 42 H 0.085 0.915 43 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 24.603 -10.972 1.951 27.009 hybrid contribution 0.363 0.999 -0.032 1.063 sum 24.966 -9.973 1.920 26.953 Atomic orbital electron populations 1.69926 1.06303 1.26762 1.51427 1.25053 0.94742 0.99140 0.94728 0.86759 0.80323 0.83652 0.78406 1.20352 1.21448 1.19057 1.21170 0.89543 0.94541 1.50338 0.90946 1.19600 0.97293 0.92187 0.96044 1.21269 0.89251 0.99497 1.02494 1.21850 1.00476 0.91891 1.03407 1.20839 0.79760 0.92545 0.74939 1.90679 1.54226 1.46841 1.49127 1.48665 1.05265 1.06886 1.74838 1.22297 0.87214 0.91924 1.00945 1.22769 0.97772 0.95606 1.00975 1.22932 0.94814 0.97247 1.02524 1.21399 0.91936 0.84487 0.97804 0.90972 1.22905 1.01236 0.95491 0.94204 1.23083 1.00757 0.96436 0.97480 1.22778 1.01784 0.96817 0.96443 1.22926 1.00543 0.97244 0.96548 0.92814 0.96710 0.97139 0.92134 0.92116 0.89588 0.89603 0.90356 0.91452 0.90624 0.89954 0.90363 0.89471 0.87971 0.89531 0.91782 0.90303 0.91682 0.91549 0.90082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.67 13.96 55.43 0.77 -27.89 16 2 C 0.06 1.92 5.47 -17.82 -0.10 1.82 16 3 Si 0.88 21.99 27.47 -169.99 -4.67 17.32 16 4 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 6 H -0.27 -6.30 6.54 56.52 0.37 -5.93 16 7 C -0.52 -15.36 9.66 -34.44 -0.33 -15.69 16 8 H 0.07 2.34 7.99 -52.48 -0.42 1.92 16 9 C -0.01 -0.34 4.04 -27.89 -0.11 -0.45 16 10 C -0.09 -1.87 4.44 -26.73 -0.12 -1.99 16 11 C -0.14 -2.24 4.71 -27.88 -0.13 -2.37 16 12 C 0.53 8.75 7.64 -10.99 -0.08 8.67 16 13 O -0.53 -10.85 15.09 5.56 0.08 -10.77 16 14 N -0.62 -7.80 3.06 -163.01 -0.50 -8.30 16 15 C 0.10 0.90 6.69 -2.53 -0.02 0.88 16 16 C -0.13 -0.90 7.09 -24.58 -0.17 -1.08 16 17 C -0.14 -1.00 5.13 -24.89 -0.13 -1.13 16 18 C 0.15 1.60 2.98 -66.95 -0.20 1.40 16 19 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 20 C -0.12 -1.33 3.58 -89.81 -0.32 -1.65 16 21 C -0.14 -1.33 7.34 -25.92 -0.19 -1.53 16 22 C -0.14 -1.20 8.08 -25.92 -0.21 -1.41 16 23 C -0.13 -1.18 7.44 -25.92 -0.19 -1.37 16 24 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 25 H 0.01 0.35 7.20 -51.93 -0.37 -0.02 16 26 H 0.01 0.25 7.57 -51.93 -0.39 -0.15 16 27 H 0.06 1.37 8.10 -51.93 -0.42 0.95 16 28 H 0.06 1.37 8.10 -51.93 -0.42 0.95 16 29 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 30 H 0.09 1.26 7.85 -51.93 -0.41 0.85 16 31 H 0.08 0.67 7.48 -51.93 -0.39 0.29 16 32 H 0.07 0.56 8.14 -51.92 -0.42 0.13 16 33 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.09 0.57 4.95 -51.93 -0.26 0.32 16 37 H 0.10 1.51 7.00 -51.93 -0.36 1.14 16 38 H 0.09 0.69 5.38 -51.93 -0.28 0.41 16 39 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 42 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 43 H 0.08 0.59 7.15 -51.93 -0.37 0.22 16 LS Contribution 333.12 15.07 5.02 5.02 Total: -1.00 -33.82 333.12 -9.09 -42.91 By element: Atomic # 1 Polarization: 5.09 SS G_CDS: -7.49 Total: -2.40 kcal Atomic # 6 Polarization: -13.58 SS G_CDS: -2.31 Total: -15.89 kcal Atomic # 7 Polarization: -36.47 SS G_CDS: 0.27 Total: -36.20 kcal Atomic # 8 Polarization: -10.85 SS G_CDS: 0.08 Total: -10.77 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -4.67 Total: 17.32 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -33.82 -9.09 -42.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594277278.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.779 kcal (2) G-P(sol) polarization free energy of solvation -33.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds