Wall clock time and date at job start Mon Mar 30 2020 07:52:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86793 * 120.00053 * 2 1 4 4 H 1.48496 * 109.47740 * 270.00204 * 3 2 1 5 5 H 1.48504 * 109.47189 * 30.00506 * 3 2 1 6 6 H 1.48502 * 109.47428 * 150.00072 * 3 2 1 7 7 C 1.37881 * 120.00316 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99609 * 359.97438 * 7 2 1 9 9 C 1.50694 * 120.00557 * 180.02562 * 7 2 1 10 10 C 1.52999 * 109.47640 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47434 * 179.97438 * 10 9 7 12 12 C 1.50700 * 109.47146 * 180.02562 * 11 10 9 13 13 O 1.21281 * 120.00077 * 0.02562 * 12 11 10 14 14 N 1.34773 * 120.00037 * 179.97438 * 12 11 10 15 15 C 1.47431 * 125.64649 * 0.02632 * 14 12 11 16 16 C 1.54906 * 104.83070 * 204.08807 * 15 14 12 17 17 C 1.55161 * 101.58356 * 322.99032 * 16 15 14 18 18 C 1.47018 * 125.65096 * 179.71303 * 14 12 11 19 19 H 1.09002 * 109.87792 * 59.56277 * 18 14 12 20 20 C 1.53002 * 109.88412 * 298.40132 * 18 14 12 21 21 C 1.53773 * 113.61192 * 284.32931 * 20 18 14 22 22 C 1.53778 * 87.08135 * 220.01668 * 21 20 18 23 23 C 1.53775 * 113.61152 * 186.83281 * 20 18 14 24 24 H 0.96997 * 119.99737 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.47290 * 59.98890 * 9 7 2 26 26 H 1.09004 * 109.46859 * 299.99857 * 9 7 2 27 27 H 1.09004 * 109.46786 * 59.99844 * 10 9 7 28 28 H 1.08998 * 109.46803 * 299.99916 * 10 9 7 29 29 H 1.08992 * 109.46862 * 59.99937 * 11 10 9 30 30 H 1.09001 * 109.46588 * 300.00277 * 11 10 9 31 31 H 1.09000 * 110.36588 * 322.92873 * 15 14 12 32 32 H 1.09008 * 110.36375 * 85.14335 * 15 14 12 33 33 H 1.08996 * 111.00596 * 81.06740 * 16 15 14 34 34 H 1.09004 * 111.00608 * 204.87920 * 16 15 14 35 35 H 1.08994 * 110.71754 * 153.86264 * 17 16 15 36 36 H 1.08994 * 110.71996 * 276.96310 * 17 16 15 37 37 H 1.09004 * 112.84860 * 55.63623 * 20 18 14 38 38 H 1.09003 * 113.62025 * 334.56828 * 21 20 18 39 39 H 1.09001 * 113.61630 * 105.47114 * 21 20 18 40 40 H 1.08994 * 113.61652 * 270.88591 * 22 21 20 41 41 H 1.09003 * 113.61297 * 139.98330 * 22 21 20 42 42 H 1.09001 * 113.61563 * 254.52480 * 23 20 18 43 43 H 1.08994 * 113.61839 * 25.34927 * 23 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5116 -1.1941 0.0000 10 6 4.0216 -2.6366 -0.0001 11 6 5.5516 -2.6366 -0.0001 12 6 6.0539 -4.0574 -0.0009 13 8 5.2658 -4.9792 -0.0018 14 7 7.3790 -4.3037 -0.0016 15 6 8.4426 -3.2828 -0.0011 16 6 9.6751 -3.9940 -0.6134 17 6 9.5317 -5.4242 -0.0289 18 6 8.0031 -5.6348 0.0036 19 1 7.6891 -6.1948 -0.8772 20 6 7.6062 -6.3907 1.2732 21 6 8.3444 -5.9088 2.5332 22 6 8.4435 -7.3871 2.9450 23 6 8.3429 -7.7290 1.4490 24 1 -0.4849 0.8400 0.0004 25 1 3.8746 -0.6807 0.8904 26 1 3.8752 -0.6797 -0.8895 27 1 3.6586 -3.1502 -0.8904 28 1 3.6580 -3.1506 0.8897 29 1 5.9149 -2.1228 0.8898 30 1 5.9148 -2.1226 -0.8901 31 1 8.1515 -2.4314 -0.6163 32 1 8.6568 -2.9585 1.0173 33 1 9.6169 -4.0090 -1.7017 34 1 10.6016 -3.5263 -0.2802 35 1 10.0104 -6.1563 -0.6792 36 1 9.9483 -5.4732 0.9771 37 1 6.5263 -6.4667 1.4004 38 1 9.3099 -5.4480 2.3243 39 1 7.7242 -5.3104 3.2006 40 1 7.5927 -7.7353 3.5306 41 1 9.4023 -7.6530 3.3901 42 1 7.7215 -8.6001 1.2411 43 1 9.3072 -7.7664 0.9425 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594277278.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:52:05 Heat of formation + Delta-G solvation = -50.977740 kcal Electronic energy + Delta-G solvation = -20470.138478 eV Core-core repulsion = 17514.368811 eV Total energy + Delta-G solvation = -2955.769667 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.62476 -39.71520 -37.68369 -36.15937 -34.17168 -32.62172 -30.82481 -29.80326 -26.55435 -26.19739 -25.55904 -23.53287 -22.52877 -21.79804 -20.17134 -19.42179 -18.85589 -17.95071 -17.58970 -16.71861 -16.58702 -16.26694 -15.84626 -14.99375 -14.96557 -14.80998 -14.40689 -14.02660 -13.92825 -13.81967 -13.68141 -13.27082 -13.10420 -12.72001 -12.56456 -12.51800 -12.11555 -11.99816 -11.80375 -11.73879 -11.70015 -11.52584 -11.44935 -11.35145 -11.24872 -10.94702 -10.76280 -10.66915 -9.55281 -8.28935 -6.34970 1.37460 1.41402 1.53597 1.65523 2.02946 2.38362 3.05899 3.47336 3.64987 3.69712 3.84566 3.86641 3.95705 4.01415 4.09835 4.13958 4.20553 4.39336 4.46166 4.59133 4.72232 4.74320 4.80289 4.85902 4.88030 4.90543 4.97470 5.00231 5.00949 5.05602 5.07302 5.13551 5.16297 5.32175 5.42450 5.49832 5.54681 5.56693 5.65533 5.67126 6.28935 6.55609 6.73352 7.22258 7.29441 8.88904 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.030063 B = 0.003857 C = 0.003624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.143061 B = 7258.446273 C = 7724.067634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.957 5.957 2 C -0.003 4.003 3 Si 0.963 3.037 4 H -0.263 1.263 5 H -0.285 1.285 6 H -0.236 1.236 7 C -0.542 4.542 8 H 0.017 0.983 9 C -0.007 4.007 10 C -0.079 4.079 11 C -0.124 4.124 12 C 0.522 3.478 13 O -0.589 6.589 14 N -0.615 5.615 15 C 0.086 3.914 16 C -0.124 4.124 17 C -0.127 4.127 18 C 0.139 3.861 19 H 0.050 0.950 20 C -0.132 4.132 21 C -0.133 4.133 22 C -0.137 4.137 23 C -0.126 4.126 24 H 0.267 0.733 25 H 0.030 0.970 26 H 0.030 0.970 27 H 0.034 0.966 28 H 0.033 0.967 29 H 0.111 0.889 30 H 0.113 0.887 31 H 0.087 0.913 32 H 0.083 0.917 33 H 0.075 0.925 34 H 0.113 0.887 35 H 0.096 0.904 36 H 0.102 0.898 37 H 0.052 0.948 38 H 0.113 0.887 39 H 0.044 0.956 40 H 0.065 0.935 41 H 0.089 0.911 42 H 0.056 0.944 43 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.370 -8.752 2.047 31.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.199 4.199 3 Si 0.785 3.215 4 H -0.188 1.188 5 H -0.210 1.210 6 H -0.159 1.159 7 C -0.580 4.580 8 H 0.036 0.964 9 C -0.044 4.044 10 C -0.117 4.117 11 C -0.164 4.164 12 C 0.312 3.688 13 O -0.470 6.470 14 N -0.348 5.348 15 C -0.035 4.035 16 C -0.161 4.161 17 C -0.164 4.164 18 C 0.036 3.964 19 H 0.068 0.932 20 C -0.151 4.151 21 C -0.170 4.170 22 C -0.174 4.174 23 C -0.163 4.163 24 H 0.076 0.924 25 H 0.048 0.952 26 H 0.048 0.952 27 H 0.053 0.947 28 H 0.052 0.948 29 H 0.129 0.871 30 H 0.131 0.869 31 H 0.105 0.895 32 H 0.101 0.899 33 H 0.094 0.906 34 H 0.131 0.869 35 H 0.115 0.885 36 H 0.120 0.880 37 H 0.071 0.929 38 H 0.131 0.869 39 H 0.063 0.937 40 H 0.084 0.916 41 H 0.107 0.893 42 H 0.075 0.925 43 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 29.735 -9.116 2.040 31.168 hybrid contribution -1.311 0.305 -0.068 1.347 sum 28.425 -8.811 1.972 29.824 Atomic orbital electron populations 1.70109 1.08708 1.28346 1.52589 1.26213 0.95771 1.04171 0.93747 0.85476 0.79636 0.76929 0.79472 1.18768 1.21042 1.15916 1.21542 0.92653 0.92854 1.50918 0.96416 1.19524 0.93523 0.94071 0.97292 1.21035 0.93377 0.97282 1.00054 1.21676 0.96228 0.92594 1.05870 1.20846 0.81031 0.91989 0.74949 1.90663 1.56110 1.48154 1.52033 1.48681 1.04655 1.08971 1.72472 1.22693 0.86915 0.91511 1.02425 1.22790 0.97745 0.94727 1.00880 1.22932 0.91206 0.98331 1.03921 1.21608 0.94704 0.83435 0.96659 0.93156 1.22820 0.98842 0.97884 0.95552 1.23107 1.01150 0.96928 0.95814 1.22757 1.02520 0.95971 0.96192 1.22940 1.01078 0.95344 0.96977 0.92440 0.95154 0.95209 0.94691 0.94798 0.87088 0.86873 0.89473 0.89916 0.90640 0.86901 0.88531 0.88028 0.92925 0.86903 0.93718 0.91622 0.89263 0.92495 0.87463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -62.65 13.96 21.45 0.30 -62.35 16 2 C 0.00 -0.19 5.47 84.66 0.46 0.27 16 3 Si 0.96 44.49 27.47 68.60 1.88 46.38 16 4 H -0.26 -11.50 7.11 99.48 0.71 -10.80 16 5 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 6 H -0.24 -9.74 6.54 99.48 0.65 -9.09 16 7 C -0.54 -33.39 9.66 25.60 0.25 -33.15 16 8 H 0.02 1.22 7.99 -2.91 -0.02 1.20 16 9 C -0.01 -0.33 4.04 29.85 0.12 -0.21 16 10 C -0.08 -3.51 4.44 30.59 0.14 -3.37 16 11 C -0.12 -3.93 4.71 29.85 0.14 -3.79 16 12 C 0.52 17.54 7.64 87.66 0.67 18.21 16 13 O -0.59 -25.80 15.09 -3.03 -0.05 -25.84 16 14 N -0.61 -14.75 3.06 -788.02 -2.41 -17.17 16 15 C 0.09 1.24 6.69 86.85 0.58 1.82 16 16 C -0.12 -1.11 7.09 31.99 0.23 -0.88 16 17 C -0.13 -1.34 5.13 31.79 0.16 -1.18 16 18 C 0.14 2.90 2.98 45.35 0.14 3.03 16 19 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 20 C -0.13 -2.97 3.58 -10.27 -0.04 -3.01 16 21 C -0.13 -2.33 7.34 31.12 0.23 -2.10 16 22 C -0.14 -2.13 8.08 31.12 0.25 -1.88 16 23 C -0.13 -2.05 7.44 31.12 0.23 -1.82 16 24 H 0.27 16.12 8.31 -92.71 -0.77 15.35 16 25 H 0.03 1.38 7.20 -2.39 -0.02 1.36 16 26 H 0.03 1.33 7.57 -2.39 -0.02 1.31 16 27 H 0.03 1.68 8.10 -2.38 -0.02 1.66 16 28 H 0.03 1.63 8.10 -2.39 -0.02 1.61 16 29 H 0.11 2.97 8.14 -2.39 -0.02 2.95 16 30 H 0.11 2.98 7.85 -2.39 -0.02 2.96 16 31 H 0.09 1.14 7.48 -2.39 -0.02 1.12 16 32 H 0.08 1.00 8.14 -2.38 -0.02 0.98 16 33 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.11 0.43 8.14 -2.38 -0.02 0.41 16 35 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 36 H 0.10 0.81 4.95 -2.39 -0.01 0.80 16 37 H 0.05 1.72 7.00 -2.39 -0.02 1.70 16 38 H 0.11 1.36 5.38 -2.39 -0.01 1.35 16 39 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 40 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 41 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 42 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 43 H 0.11 1.20 7.15 -2.39 -0.02 1.18 16 Total: -1.00 -80.61 333.12 4.19 -76.42 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: 0.91 Total: 10.59 kcal Atomic # 6 Polarization: -31.59 SS G_CDS: 3.56 Total: -28.03 kcal Atomic # 7 Polarization: -77.40 SS G_CDS: -2.12 Total: -79.52 kcal Atomic # 8 Polarization: -25.80 SS G_CDS: -0.05 Total: -25.84 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 1.88 Total: 46.38 kcal Total: -80.61 4.19 -76.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594277278.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.444 kcal (2) G-P(sol) polarization free energy of solvation -80.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds