Wall clock time and date at job start Mon Mar 30 2020 06:57:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86803 * 120.00167 * 2 1 4 4 H 1.48497 * 109.47137 * 270.00066 * 3 2 1 5 5 H 1.48496 * 109.46914 * 30.00090 * 3 2 1 6 6 H 1.48497 * 109.47410 * 149.99832 * 3 2 1 7 7 C 1.37877 * 120.00358 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00562 * 179.97438 * 7 2 1 9 9 C 1.50710 * 119.99295 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.46734 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47279 * 180.02562 * 10 9 7 12 12 C 1.50700 * 109.47337 * 180.02562 * 11 10 9 13 13 O 1.21279 * 120.00265 * 359.97438 * 12 11 10 14 14 N 1.34778 * 119.99680 * 180.02562 * 12 11 10 15 15 C 1.47171 * 135.99597 * 179.97438 * 14 12 11 16 16 C 1.52962 * 87.91334 * 153.26317 * 15 14 12 17 17 C 1.47163 * 136.00303 * 359.93553 * 14 12 11 18 18 C 1.52517 * 114.09994 * 272.00329 * 16 15 14 19 19 C 1.53175 * 109.26046 * 283.01750 * 18 16 15 20 20 C 1.52976 * 109.41317 * 302.45330 * 19 18 16 21 21 C 1.52979 * 109.71136 * 61.81270 * 20 19 18 22 22 C 1.52526 * 114.09141 * 139.50180 * 16 15 14 23 23 H 0.97002 * 119.99887 * 359.97438 * 1 2 3 24 24 H 1.08995 * 109.47064 * 60.00314 * 9 7 2 25 25 H 1.08994 * 109.46874 * 299.99812 * 9 7 2 26 26 H 1.09002 * 109.47512 * 60.00053 * 10 9 7 27 27 H 1.09002 * 109.47196 * 300.00127 * 10 9 7 28 28 H 1.09001 * 109.47646 * 59.99424 * 11 10 9 29 29 H 1.09002 * 109.46795 * 299.99987 * 11 10 9 30 30 H 1.09002 * 113.48947 * 268.04175 * 15 14 12 31 31 H 1.09002 * 113.49044 * 38.49057 * 15 14 12 32 32 H 1.09001 * 113.49148 * 321.45858 * 17 14 12 33 33 H 1.09007 * 113.48628 * 91.90119 * 17 14 12 34 34 H 1.08999 * 109.50598 * 42.95450 * 18 16 15 35 35 H 1.09003 * 109.50558 * 163.08621 * 18 16 15 36 36 H 1.09000 * 109.47634 * 182.47559 * 19 18 16 37 37 H 1.08995 * 109.48268 * 62.43985 * 19 18 16 38 38 H 1.09004 * 109.43278 * 301.74122 * 20 19 18 39 39 H 1.09002 * 109.39445 * 181.86566 * 20 19 18 40 40 H 1.09000 * 109.47888 * 178.20162 * 21 20 19 41 41 H 1.08992 * 109.49191 * 58.17289 * 21 20 19 42 42 H 1.09003 * 109.50674 * 196.92431 * 22 16 15 43 43 H 1.09005 * 109.50637 * 317.00126 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 6 2.2452 -3.6620 -0.0005 11 6 1.4802 -4.9871 -0.0012 12 6 2.4595 -6.1325 -0.0005 13 8 3.6519 -5.9109 -0.0001 14 7 2.0102 -7.4032 -0.0015 15 6 2.6212 -8.7421 -0.0018 16 6 1.3557 -9.2585 0.6849 17 6 0.6935 -8.0605 -0.0020 18 6 1.3903 -9.1646 2.2068 19 6 2.2630 -10.2940 2.7629 20 6 1.7105 -11.6413 2.2942 21 6 1.7610 -11.7167 0.7671 22 6 0.8789 -10.6141 0.1736 23 1 -0.4850 0.8401 0.0004 24 1 0.6240 -2.5567 -0.8903 25 1 0.6247 -2.5570 0.8897 26 1 2.8719 -3.6044 0.8894 27 1 2.8719 -3.6043 -0.8905 28 1 0.8538 -5.0446 -0.8913 29 1 0.8533 -5.0450 0.8886 30 1 2.7711 -9.1510 -1.0010 31 1 3.5130 -8.8128 0.6210 32 1 -0.0445 -7.5554 0.6213 33 1 0.3196 -8.2834 -1.0013 34 1 1.8082 -8.2024 2.5026 35 1 0.3783 -9.2592 2.6004 36 1 2.2547 -10.2568 3.8522 37 1 3.2847 -10.1749 2.4027 38 1 0.6782 -11.7460 2.6284 39 1 2.3119 -12.4460 2.7171 40 1 1.3964 -12.6901 0.4390 41 1 2.7886 -11.5809 0.4301 42 1 -0.1561 -10.7737 0.4759 43 1 0.9481 -10.6378 -0.9140 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594337471.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:26 Heat of formation + Delta-G solvation = -39.205089 kcal Electronic energy + Delta-G solvation = -20085.273332 eV Core-core repulsion = 17130.014165 eV Total energy + Delta-G solvation = -2955.259167 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.16599 -38.51456 -36.21809 -34.14214 -32.02746 -31.24479 -30.63390 -28.14566 -26.19315 -26.09903 -23.46608 -23.04453 -21.43052 -20.19914 -19.07858 -18.43002 -16.78509 -16.24680 -16.09054 -15.49601 -15.25665 -14.82912 -14.41235 -14.33946 -14.01122 -13.87540 -13.08739 -12.88403 -12.52801 -12.46459 -12.21154 -12.08244 -12.03300 -11.72744 -11.38763 -11.30019 -11.22943 -10.78473 -10.63273 -10.54732 -10.50580 -10.40564 -10.26499 -9.64479 -9.59606 -9.22820 -8.98671 -8.62241 -8.29959 -5.95628 -3.96910 2.88119 3.01164 3.36365 3.41927 3.47110 3.90592 4.35725 4.42411 4.51109 4.64901 4.76581 4.91332 4.92724 5.03058 5.07598 5.20222 5.29007 5.34908 5.36087 5.40401 5.47906 5.58605 5.64347 5.68304 5.71547 5.74248 5.78822 5.82998 5.84585 5.95879 5.97581 6.12456 6.16255 6.32244 6.75875 6.96676 7.18530 7.72858 7.85906 7.86360 8.05418 8.46207 8.49474 9.10172 9.66895 11.15942 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.046614 B = 0.003067 C = 0.003045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 600.534652 B = 9126.493855 C = 9193.875236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.517 4.517 8 H 0.056 0.944 9 C 0.021 3.979 10 C -0.095 4.095 11 C -0.130 4.130 12 C 0.541 3.459 13 O -0.538 6.538 14 N -0.652 5.652 15 C 0.111 3.889 16 C -0.094 4.094 17 C 0.107 3.893 18 C -0.092 4.092 19 C -0.119 4.119 20 C -0.119 4.119 21 C -0.118 4.118 22 C -0.100 4.100 23 H 0.260 0.740 24 H 0.015 0.985 25 H 0.016 0.984 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.079 0.921 31 H 0.074 0.926 32 H 0.080 0.920 33 H 0.084 0.916 34 H 0.068 0.932 35 H 0.069 0.931 36 H 0.063 0.937 37 H 0.062 0.938 38 H 0.062 0.938 39 H 0.059 0.941 40 H 0.062 0.938 41 H 0.062 0.938 42 H 0.069 0.931 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.130 -26.211 2.452 26.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.556 4.556 8 H 0.074 0.926 9 C -0.016 4.016 10 C -0.133 4.133 11 C -0.170 4.170 12 C 0.333 3.667 13 O -0.413 6.413 14 N -0.389 5.389 15 C -0.012 4.012 16 C -0.095 4.095 17 C -0.016 4.016 18 C -0.130 4.130 19 C -0.156 4.156 20 C -0.157 4.157 21 C -0.156 4.156 22 C -0.138 4.138 23 H 0.069 0.931 24 H 0.034 0.966 25 H 0.034 0.966 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.104 0.896 29 H 0.104 0.896 30 H 0.097 0.903 31 H 0.092 0.908 32 H 0.098 0.902 33 H 0.102 0.898 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.082 0.918 37 H 0.081 0.919 38 H 0.080 0.920 39 H 0.078 0.922 40 H 0.081 0.919 41 H 0.081 0.919 42 H 0.088 0.912 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -0.533 -25.696 2.455 25.818 hybrid contribution 0.331 0.948 -0.136 1.013 sum -0.202 -24.748 2.319 24.857 Atomic orbital electron populations 1.69963 1.06038 1.26514 1.51268 1.25020 0.94860 0.99244 0.95404 0.86588 0.79905 0.83404 0.78099 1.20677 1.21258 1.19832 1.21279 0.93204 0.91012 1.50077 0.92569 1.19125 0.93947 0.91423 0.97104 1.21464 0.98666 0.91511 1.01681 1.21782 0.98015 0.93606 1.03578 1.20910 0.89956 0.81507 0.74324 1.90681 1.17443 1.83488 1.49737 1.49778 1.09913 1.04223 1.74989 1.22924 0.97204 0.81144 0.99954 1.21892 0.96941 0.94456 0.96220 1.23058 0.87561 0.90533 1.00489 1.21200 1.00588 0.99218 0.91961 1.21536 0.99525 0.94345 1.00237 1.21519 1.01231 0.97188 0.95717 1.21530 1.00260 0.98227 0.95576 1.21366 0.99756 0.92666 1.00041 0.93082 0.96624 0.96606 0.92691 0.92737 0.89555 0.89555 0.90337 0.90780 0.90169 0.89798 0.91313 0.91240 0.91832 0.91906 0.91968 0.92212 0.91944 0.91881 0.91206 0.91430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.46 13.29 55.43 0.74 -26.72 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 22.33 29.54 -169.99 -5.02 17.31 16 4 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 7 C -0.52 -15.29 9.11 -34.44 -0.31 -15.60 16 8 H 0.06 1.64 7.74 -52.49 -0.41 1.23 16 9 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 10 C -0.10 -2.15 4.44 -26.73 -0.12 -2.27 16 11 C -0.13 -2.33 5.53 -27.89 -0.15 -2.49 16 12 C 0.54 9.66 8.08 -10.98 -0.09 9.57 16 13 O -0.54 -11.75 16.76 5.56 0.09 -11.66 16 14 N -0.65 -8.81 3.46 -184.78 -0.64 -9.45 16 15 C 0.11 1.19 7.53 -8.19 -0.06 1.12 16 16 C -0.09 -0.77 0.85 -154.94 -0.13 -0.90 16 17 C 0.11 1.01 7.59 -8.10 -0.06 0.95 16 18 C -0.09 -0.78 5.11 -26.89 -0.14 -0.92 16 19 C -0.12 -0.88 5.87 -26.65 -0.16 -1.04 16 20 C -0.12 -0.73 5.86 -26.75 -0.16 -0.89 16 21 C -0.12 -0.70 5.87 -26.66 -0.16 -0.85 16 22 C -0.10 -0.61 5.15 -26.89 -0.14 -0.75 16 23 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 24 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 25 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.05 1.29 8.10 -51.93 -0.42 0.87 16 27 H 0.05 1.28 8.10 -51.93 -0.42 0.86 16 28 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 29 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 30 H 0.08 0.75 8.04 -51.93 -0.42 0.33 16 31 H 0.07 0.86 7.56 -51.93 -0.39 0.47 16 32 H 0.08 0.72 8.11 -51.93 -0.42 0.30 16 33 H 0.08 0.67 8.10 -51.92 -0.42 0.25 16 34 H 0.07 0.74 7.94 -51.93 -0.41 0.32 16 35 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.06 0.51 7.58 -51.93 -0.39 0.12 16 38 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 39 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 41 H 0.06 0.40 8.08 -51.93 -0.42 -0.02 16 42 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.07 0.38 8.07 -51.93 -0.42 -0.03 16 LS Contribution 342.95 15.07 5.17 5.17 Total: -1.00 -33.77 342.95 -9.48 -43.25 By element: Atomic # 1 Polarization: 2.11 SS G_CDS: -7.91 Total: -5.79 kcal Atomic # 6 Polarization: -10.19 SS G_CDS: -1.91 Total: -12.10 kcal Atomic # 7 Polarization: -36.27 SS G_CDS: 0.10 Total: -36.17 kcal Atomic # 8 Polarization: -11.75 SS G_CDS: 0.09 Total: -11.66 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -33.77 -9.48 -43.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594337471.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.048 kcal (2) G-P(sol) polarization free energy of solvation -33.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds