Wall clock time and date at job start Mon Mar 30 2020 06:57:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86803 * 120.00167 * 2 1 4 4 H 1.48497 * 109.47137 * 270.00066 * 3 2 1 5 5 H 1.48496 * 109.46914 * 30.00090 * 3 2 1 6 6 H 1.48497 * 109.47410 * 149.99832 * 3 2 1 7 7 C 1.37877 * 120.00358 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00562 * 179.97438 * 7 2 1 9 9 C 1.50710 * 119.99295 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.46734 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47279 * 180.02562 * 10 9 7 12 12 C 1.50700 * 109.47337 * 180.02562 * 11 10 9 13 13 O 1.21279 * 120.00265 * 359.97438 * 12 11 10 14 14 N 1.34778 * 119.99680 * 180.02562 * 12 11 10 15 15 C 1.47171 * 135.99597 * 179.97438 * 14 12 11 16 16 C 1.52962 * 87.91334 * 153.26317 * 15 14 12 17 17 C 1.47163 * 136.00303 * 359.93553 * 14 12 11 18 18 C 1.52517 * 114.09994 * 272.00329 * 16 15 14 19 19 C 1.53175 * 109.26046 * 283.01750 * 18 16 15 20 20 C 1.52976 * 109.41317 * 302.45330 * 19 18 16 21 21 C 1.52979 * 109.71136 * 61.81270 * 20 19 18 22 22 C 1.52526 * 114.09141 * 139.50180 * 16 15 14 23 23 H 0.97002 * 119.99887 * 359.97438 * 1 2 3 24 24 H 1.08995 * 109.47064 * 60.00314 * 9 7 2 25 25 H 1.08994 * 109.46874 * 299.99812 * 9 7 2 26 26 H 1.09002 * 109.47512 * 60.00053 * 10 9 7 27 27 H 1.09002 * 109.47196 * 300.00127 * 10 9 7 28 28 H 1.09001 * 109.47646 * 59.99424 * 11 10 9 29 29 H 1.09002 * 109.46795 * 299.99987 * 11 10 9 30 30 H 1.09002 * 113.48947 * 268.04175 * 15 14 12 31 31 H 1.09002 * 113.49044 * 38.49057 * 15 14 12 32 32 H 1.09001 * 113.49148 * 321.45858 * 17 14 12 33 33 H 1.09007 * 113.48628 * 91.90119 * 17 14 12 34 34 H 1.08999 * 109.50598 * 42.95450 * 18 16 15 35 35 H 1.09003 * 109.50558 * 163.08621 * 18 16 15 36 36 H 1.09000 * 109.47634 * 182.47559 * 19 18 16 37 37 H 1.08995 * 109.48268 * 62.43985 * 19 18 16 38 38 H 1.09004 * 109.43278 * 301.74122 * 20 19 18 39 39 H 1.09002 * 109.39445 * 181.86566 * 20 19 18 40 40 H 1.09000 * 109.47888 * 178.20162 * 21 20 19 41 41 H 1.08992 * 109.49191 * 58.17289 * 21 20 19 42 42 H 1.09003 * 109.50674 * 196.92431 * 22 16 15 43 43 H 1.09005 * 109.50637 * 317.00126 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 6 2.2452 -3.6620 -0.0005 11 6 1.4802 -4.9871 -0.0012 12 6 2.4595 -6.1325 -0.0005 13 8 3.6519 -5.9109 -0.0001 14 7 2.0102 -7.4032 -0.0015 15 6 2.6212 -8.7421 -0.0018 16 6 1.3557 -9.2585 0.6849 17 6 0.6935 -8.0605 -0.0020 18 6 1.3903 -9.1646 2.2068 19 6 2.2630 -10.2940 2.7629 20 6 1.7105 -11.6413 2.2942 21 6 1.7610 -11.7167 0.7671 22 6 0.8789 -10.6141 0.1736 23 1 -0.4850 0.8401 0.0004 24 1 0.6240 -2.5567 -0.8903 25 1 0.6247 -2.5570 0.8897 26 1 2.8719 -3.6044 0.8894 27 1 2.8719 -3.6043 -0.8905 28 1 0.8538 -5.0446 -0.8913 29 1 0.8533 -5.0450 0.8886 30 1 2.7711 -9.1510 -1.0010 31 1 3.5130 -8.8128 0.6210 32 1 -0.0445 -7.5554 0.6213 33 1 0.3196 -8.2834 -1.0013 34 1 1.8082 -8.2024 2.5026 35 1 0.3783 -9.2592 2.6004 36 1 2.2547 -10.2568 3.8522 37 1 3.2847 -10.1749 2.4027 38 1 0.6782 -11.7460 2.6284 39 1 2.3119 -12.4460 2.7171 40 1 1.3964 -12.6901 0.4390 41 1 2.7886 -11.5809 0.4301 42 1 -0.1561 -10.7737 0.4759 43 1 0.9481 -10.6378 -0.9140 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594337471.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:25 Heat of formation + Delta-G solvation = -58.647338 kcal Electronic energy + Delta-G solvation = -20086.116412 eV Core-core repulsion = 17130.014165 eV Total energy + Delta-G solvation = -2956.102246 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.05511 -39.79228 -37.01292 -36.14191 -34.05623 -31.89750 -31.57494 -29.78751 -27.40960 -26.98554 -25.29580 -23.63637 -22.31208 -21.84894 -20.22450 -19.18889 -18.53407 -17.88775 -17.15771 -16.74353 -16.42658 -16.08950 -16.02939 -15.03133 -14.84856 -14.76881 -14.46360 -14.32398 -13.89105 -13.72244 -13.21267 -13.15472 -13.05437 -12.82976 -12.70107 -12.63870 -12.53840 -12.42544 -11.94289 -11.82696 -11.61385 -11.51359 -11.32528 -11.19800 -11.01876 -10.94054 -10.61567 -10.56433 -9.72185 -8.22053 -6.32413 1.38290 1.39743 1.51356 1.57476 1.85271 2.40363 3.10681 3.17135 3.52491 3.73359 3.88882 4.06996 4.14114 4.18183 4.22212 4.34131 4.41081 4.45549 4.50868 4.60024 4.62907 4.65924 4.70218 4.80738 4.89239 4.92214 4.99395 5.04024 5.09442 5.14949 5.15264 5.22650 5.29716 5.34032 5.42902 5.50488 5.54026 5.61205 5.71014 5.83209 6.24970 6.69650 6.82287 7.12512 7.36245 8.89641 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.046614 B = 0.003067 C = 0.003045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 600.534652 B = 9126.493855 C = 9193.875236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.004 3.996 3 Si 0.963 3.037 4 H -0.271 1.271 5 H -0.276 1.276 6 H -0.269 1.269 7 C -0.550 4.550 8 H 0.050 0.950 9 C 0.028 3.972 10 C -0.082 4.082 11 C -0.120 4.120 12 C 0.538 3.462 13 O -0.592 6.592 14 N -0.654 5.654 15 C 0.103 3.897 16 C -0.076 4.076 17 C 0.103 3.897 18 C -0.094 4.094 19 C -0.119 4.119 20 C -0.116 4.116 21 C -0.119 4.119 22 C -0.095 4.095 23 H 0.265 0.735 24 H 0.001 0.999 25 H 0.001 0.999 26 H 0.039 0.961 27 H 0.040 0.960 28 H 0.104 0.896 29 H 0.102 0.898 30 H 0.096 0.904 31 H 0.058 0.942 32 H 0.088 0.912 33 H 0.109 0.891 34 H 0.039 0.961 35 H 0.083 0.917 36 H 0.064 0.936 37 H 0.050 0.950 38 H 0.070 0.930 39 H 0.064 0.936 40 H 0.077 0.923 41 H 0.056 0.944 42 H 0.084 0.916 43 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.146 -27.709 2.154 27.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.194 4.194 3 Si 0.788 3.212 4 H -0.196 1.196 5 H -0.201 1.201 6 H -0.193 1.193 7 C -0.588 4.588 8 H 0.069 0.931 9 C -0.009 4.009 10 C -0.120 4.120 11 C -0.160 4.160 12 C 0.330 3.670 13 O -0.472 6.472 14 N -0.388 5.388 15 C -0.019 4.019 16 C -0.076 4.076 17 C -0.019 4.019 18 C -0.131 4.131 19 C -0.156 4.156 20 C -0.153 4.153 21 C -0.156 4.156 22 C -0.132 4.132 23 H 0.074 0.926 24 H 0.020 0.980 25 H 0.019 0.981 26 H 0.058 0.942 27 H 0.058 0.942 28 H 0.122 0.878 29 H 0.120 0.880 30 H 0.114 0.886 31 H 0.077 0.923 32 H 0.106 0.894 33 H 0.127 0.873 34 H 0.058 0.942 35 H 0.102 0.898 36 H 0.082 0.918 37 H 0.068 0.932 38 H 0.089 0.911 39 H 0.083 0.917 40 H 0.095 0.905 41 H 0.074 0.926 42 H 0.103 0.897 43 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -1.590 -27.254 2.158 27.386 hybrid contribution 0.607 1.335 -0.018 1.466 sum -0.983 -25.920 2.140 26.027 Atomic orbital electron populations 1.70064 1.07502 1.27868 1.51447 1.25916 0.95859 1.03097 0.94571 0.85477 0.78595 0.78569 0.78606 1.19618 1.20116 1.19346 1.21677 0.93321 0.92791 1.50969 0.93131 1.18995 0.94090 0.92257 0.95531 1.21171 0.97685 0.92929 1.00192 1.21578 0.97721 0.91458 1.05200 1.20688 0.88949 0.82962 0.74414 1.90650 1.19259 1.84619 1.52718 1.49796 1.12671 1.03772 1.72583 1.23229 0.97951 0.79614 1.01111 1.21797 0.94708 0.95477 0.95662 1.23435 0.85990 0.90192 1.02289 1.21211 1.01335 0.98136 0.92419 1.21528 0.98747 0.95029 1.00312 1.21505 1.01653 0.96127 0.96061 1.21546 0.99964 0.98891 0.95207 1.21372 1.00429 0.90762 1.00686 0.92573 0.98021 0.98063 0.94238 0.94159 0.87786 0.87968 0.88581 0.92322 0.89372 0.87307 0.94200 0.89809 0.91751 0.93164 0.91140 0.91718 0.90475 0.92551 0.89705 0.90294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.09 13.29 21.45 0.28 -56.81 16 2 C 0.00 0.21 5.46 84.66 0.46 0.68 16 3 Si 0.96 45.89 29.54 68.60 2.03 47.92 16 4 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 5 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 6 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 7 C -0.55 -33.17 9.11 25.60 0.23 -32.93 16 8 H 0.05 3.03 7.74 -2.92 -0.02 3.00 16 9 C 0.03 1.55 4.97 29.85 0.15 1.70 16 10 C -0.08 -3.82 4.44 30.59 0.14 -3.68 16 11 C -0.12 -4.31 5.53 29.85 0.16 -4.15 16 12 C 0.54 19.45 8.08 87.66 0.71 20.16 16 13 O -0.59 -26.86 16.76 -3.03 -0.05 -26.91 16 14 N -0.65 -17.15 3.46 -856.90 -2.97 -20.12 16 15 C 0.10 2.10 7.53 83.33 0.63 2.73 16 16 C -0.08 -1.07 0.85 -52.46 -0.04 -1.12 16 17 C 0.10 1.69 7.59 83.39 0.63 2.32 16 18 C -0.09 -1.47 5.11 30.49 0.16 -1.31 16 19 C -0.12 -1.64 5.87 30.64 0.18 -1.46 16 20 C -0.12 -1.15 5.86 30.58 0.18 -0.97 16 21 C -0.12 -1.05 5.87 30.64 0.18 -0.87 16 22 C -0.09 -0.83 5.15 30.49 0.16 -0.67 16 23 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 24 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 25 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 26 H 0.04 1.93 8.10 -2.39 -0.02 1.91 16 27 H 0.04 1.96 8.10 -2.39 -0.02 1.94 16 28 H 0.10 3.35 8.14 -2.39 -0.02 3.33 16 29 H 0.10 3.32 8.14 -2.39 -0.02 3.30 16 30 H 0.10 1.65 8.04 -2.39 -0.02 1.63 16 31 H 0.06 1.39 7.56 -2.39 -0.02 1.37 16 32 H 0.09 1.36 8.11 -2.39 -0.02 1.34 16 33 H 0.11 1.34 8.10 -2.38 -0.02 1.32 16 34 H 0.04 0.86 7.94 -2.39 -0.02 0.84 16 35 H 0.08 1.08 8.14 -2.39 -0.02 1.07 16 36 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 37 H 0.05 0.81 7.58 -2.39 -0.02 0.80 16 38 H 0.07 0.61 8.14 -2.38 -0.02 0.59 16 39 H 0.06 0.59 8.14 -2.39 -0.02 0.58 16 40 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 41 H 0.06 0.59 8.08 -2.39 -0.02 0.57 16 42 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 43 H 0.08 0.57 8.07 -2.38 -0.02 0.55 16 Total: -1.00 -74.53 342.95 4.16 -70.37 By element: Atomic # 1 Polarization: 4.19 SS G_CDS: 0.94 Total: 5.13 kcal Atomic # 6 Polarization: -23.49 SS G_CDS: 3.92 Total: -19.57 kcal Atomic # 7 Polarization: -74.25 SS G_CDS: -2.68 Total: -76.93 kcal Atomic # 8 Polarization: -26.86 SS G_CDS: -0.05 Total: -26.91 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 2.03 Total: 47.92 kcal Total: -74.53 4.16 -70.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594337471.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.722 kcal (2) G-P(sol) polarization free energy of solvation -74.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds