Wall clock time and date at job start Mon Mar 30 2020 06:57:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99934 * 2 1 4 4 H 1.48507 * 109.47188 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.47093 * 299.99480 * 3 2 1 6 6 H 1.48499 * 109.47553 * 59.99613 * 3 2 1 7 7 C 1.37885 * 120.00255 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99823 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99505 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.46839 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47216 * 180.02562 * 10 9 7 12 12 C 1.50697 * 109.47348 * 179.97438 * 11 10 9 13 13 O 1.21291 * 120.00074 * 0.02562 * 12 11 10 14 14 N 1.34774 * 120.00455 * 179.97438 * 12 11 10 15 15 C 1.47575 * 134.49511 * 180.02562 * 14 12 11 16 16 C 1.53952 * 86.11843 * 155.35978 * 15 14 12 17 17 C 1.52994 * 113.74232 * 137.95221 * 16 15 14 18 18 C 1.54961 * 110.92578 * 66.53990 * 17 16 15 19 19 C 1.54270 * 104.16191 * 156.29427 * 18 17 16 20 20 C 1.53869 * 106.63967 * 336.44607 * 19 18 17 21 21 C 1.54268 * 106.60115 * 359.97438 * 20 19 18 22 22 C 1.47581 * 134.49093 * 359.97438 * 14 12 11 23 23 H 0.97002 * 120.00181 * 0.02562 * 1 2 3 24 24 H 1.09004 * 109.46727 * 60.00090 * 9 7 2 25 25 H 1.08996 * 109.47326 * 300.00217 * 9 7 2 26 26 H 1.09001 * 109.47157 * 59.99784 * 10 9 7 27 27 H 1.09007 * 109.47234 * 299.99829 * 10 9 7 28 28 H 1.08996 * 109.47222 * 59.99952 * 11 10 9 29 29 H 1.09000 * 109.46949 * 299.99775 * 11 10 9 30 30 H 1.08995 * 113.77292 * 41.05850 * 15 14 12 31 31 H 1.09002 * 113.76809 * 269.65876 * 15 14 12 32 32 H 1.09000 * 113.74075 * 269.15132 * 16 15 14 33 33 H 1.09001 * 110.67554 * 303.23074 * 17 16 15 34 34 H 1.08997 * 110.47708 * 37.64024 * 18 17 16 35 35 H 1.09002 * 110.53308 * 274.97416 * 18 17 16 36 36 H 1.09002 * 110.03399 * 217.13605 * 19 18 17 37 37 H 1.08995 * 110.02943 * 95.75505 * 19 18 17 38 38 H 1.08999 * 110.03405 * 119.26051 * 20 19 18 39 39 H 1.09001 * 110.03705 * 240.64196 * 20 19 18 40 40 H 1.08997 * 110.48788 * 142.28685 * 21 20 19 41 41 H 1.09000 * 110.48806 * 264.79985 * 21 20 19 42 42 H 1.08998 * 113.77201 * 90.33673 * 22 14 12 43 43 H 1.09004 * 113.77124 * 318.94358 * 22 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4803 -4.9871 -0.0001 12 6 2.4596 -6.1325 -0.0007 13 8 3.6521 -5.9109 -0.0002 14 7 2.0104 -7.4032 -0.0009 15 6 2.6582 -8.7292 -0.0009 16 6 1.3580 -9.2484 0.6394 17 6 0.8844 -10.5881 0.0723 18 6 1.8759 -11.7232 0.4326 19 6 1.0225 -13.0064 0.3618 20 6 -0.4397 -12.5753 0.5714 21 6 -0.4247 -11.0446 0.7631 22 6 0.6731 -8.0275 0.0000 23 1 -0.4850 0.8400 -0.0004 24 1 0.6248 -2.5570 -0.8897 25 1 0.6240 -2.5567 0.8902 26 1 2.8720 -3.6043 0.8905 27 1 2.8720 -3.6044 -0.8895 28 1 0.8540 -5.0446 -0.8903 29 1 0.8534 -5.0451 0.8897 30 1 3.5269 -8.7939 0.6543 31 1 2.8458 -9.1265 -0.9985 32 1 1.3668 -9.2276 1.7291 33 1 0.7489 -10.5228 -1.0073 34 1 2.2684 -11.5812 1.4395 35 1 2.6888 -11.7653 -0.2923 36 1 1.3238 -13.6991 1.1477 37 1 1.1366 -13.4773 -0.6145 38 1 -1.0350 -12.8362 -0.3036 39 1 -0.8483 -13.0593 1.4585 40 1 -1.2896 -10.5911 0.2791 41 1 -0.4066 -10.7931 1.8235 42 1 0.2767 -8.2183 -0.9972 43 1 -0.0427 -7.5319 0.6560 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594351901.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:39 Heat of formation + Delta-G solvation = -40.898341 kcal Electronic energy + Delta-G solvation = -19541.402182 eV Core-core repulsion = 16586.069590 eV Total energy + Delta-G solvation = -2955.332592 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.49746 -38.54756 -37.05048 -34.13941 -32.04316 -31.04388 -29.08867 -28.40660 -26.87183 -26.18333 -23.65481 -21.89336 -20.53070 -20.27706 -20.00503 -18.77666 -16.84057 -16.26286 -16.23338 -15.99854 -15.28016 -15.05916 -14.39653 -14.09983 -13.85765 -13.69829 -13.08630 -13.00024 -12.85087 -12.28394 -12.03742 -11.81838 -11.73396 -11.58966 -11.41781 -11.29962 -11.03597 -10.92591 -10.80029 -10.75371 -10.60238 -10.50010 -10.49339 -9.64412 -9.58621 -9.21993 -8.97106 -8.62097 -8.30241 -5.95726 -3.96866 2.86456 3.00059 3.35141 3.42238 3.48401 3.91392 4.26973 4.33611 4.50592 4.55048 4.64896 4.80178 4.98038 5.11582 5.14051 5.23113 5.27981 5.30283 5.34168 5.37091 5.40347 5.41007 5.52450 5.58203 5.62328 5.71850 5.73529 5.76562 5.86697 5.93971 6.00349 6.01948 6.12449 6.32477 6.76312 6.97137 7.18911 7.72998 7.81901 7.86514 8.05435 8.46405 8.49654 9.10491 9.66949 11.15876 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.052007 B = 0.002736 C = 0.002623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 538.262921 B =10230.036716 C =10673.396977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.516 4.516 8 H 0.057 0.943 9 C 0.020 3.980 10 C -0.095 4.095 11 C -0.131 4.131 12 C 0.535 3.465 13 O -0.539 6.539 14 N -0.653 5.653 15 C 0.110 3.890 16 C -0.114 4.114 17 C -0.084 4.084 18 C -0.119 4.119 19 C -0.126 4.126 20 C -0.126 4.126 21 C -0.119 4.119 22 C 0.107 3.893 23 H 0.259 0.741 24 H 0.015 0.985 25 H 0.016 0.984 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.101 0.899 33 H 0.080 0.920 34 H 0.067 0.933 35 H 0.065 0.935 36 H 0.061 0.939 37 H 0.061 0.939 38 H 0.061 0.939 39 H 0.061 0.939 40 H 0.066 0.934 41 H 0.068 0.932 42 H 0.084 0.916 43 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.378 -27.493 0.806 27.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.720 3.280 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.555 4.555 8 H 0.075 0.925 9 C -0.017 4.017 10 C -0.133 4.133 11 C -0.171 4.171 12 C 0.326 3.674 13 O -0.415 6.415 14 N -0.391 5.391 15 C -0.013 4.013 16 C -0.133 4.133 17 C -0.103 4.103 18 C -0.157 4.157 19 C -0.163 4.163 20 C -0.164 4.164 21 C -0.157 4.157 22 C -0.016 4.016 23 H 0.069 0.931 24 H 0.034 0.966 25 H 0.034 0.966 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.104 0.896 29 H 0.104 0.896 30 H 0.096 0.904 31 H 0.098 0.902 32 H 0.120 0.880 33 H 0.099 0.901 34 H 0.086 0.914 35 H 0.084 0.916 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.085 0.915 41 H 0.086 0.914 42 H 0.102 0.898 43 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -1.788 -27.011 0.808 27.083 hybrid contribution 0.297 0.897 -0.078 0.948 sum -1.491 -26.115 0.730 26.167 Atomic orbital electron populations 1.69975 1.06035 1.26404 1.51375 1.25029 0.94864 0.99266 0.95428 0.86534 0.80243 0.83741 0.77503 1.19682 1.21041 1.21042 1.21320 0.93243 0.90997 1.49908 0.92512 1.19133 0.93961 0.91455 0.97106 1.21462 0.98658 0.91531 1.01676 1.21785 0.98047 0.93713 1.03545 1.21026 0.90014 0.82045 0.74310 1.90680 1.17447 1.83703 1.49628 1.50152 1.09375 1.04377 1.75192 1.23100 0.96868 0.80907 1.00438 1.23197 0.95853 0.93317 1.00913 1.22138 0.95193 0.92928 1.00002 1.22400 0.97612 0.93869 1.01816 1.22131 0.95011 0.97654 1.01548 1.22134 0.96674 0.96051 1.01501 1.22408 0.97291 0.95137 1.00859 1.23228 0.86965 0.90654 1.00786 0.93141 0.96624 0.96600 0.92700 0.92742 0.89576 0.89553 0.90434 0.90235 0.88040 0.90150 0.91387 0.91576 0.92021 0.92000 0.91973 0.92000 0.91474 0.91370 0.89804 0.89853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.46 13.29 55.43 0.74 -26.72 16 2 C 0.05 1.61 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 22.33 29.54 -169.99 -5.02 17.31 16 4 H -0.27 -6.73 7.11 56.52 0.40 -6.32 16 5 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 7 C -0.52 -15.26 9.11 -34.44 -0.31 -15.57 16 8 H 0.06 1.66 7.74 -52.49 -0.41 1.25 16 9 C 0.02 0.55 4.97 -27.88 -0.14 0.41 16 10 C -0.10 -2.16 4.44 -26.73 -0.12 -2.28 16 11 C -0.13 -2.35 5.45 -27.88 -0.15 -2.50 16 12 C 0.53 9.55 8.06 -10.99 -0.09 9.46 16 13 O -0.54 -11.79 16.71 5.55 0.09 -11.70 16 14 N -0.65 -8.76 3.61 -178.37 -0.64 -9.40 16 15 C 0.11 1.13 8.14 -2.97 -0.02 1.11 16 16 C -0.11 -0.88 3.30 -89.72 -0.30 -1.17 16 17 C -0.08 -0.51 2.60 -88.59 -0.23 -0.74 16 18 C -0.12 -0.71 6.04 -25.03 -0.15 -0.86 16 19 C -0.13 -0.70 6.80 -25.61 -0.17 -0.87 16 20 C -0.13 -0.69 6.80 -25.62 -0.17 -0.87 16 21 C -0.12 -0.69 6.27 -25.07 -0.16 -0.84 16 22 C 0.11 0.98 8.18 -3.00 -0.02 0.95 16 23 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 24 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 25 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.05 1.29 8.10 -51.93 -0.42 0.87 16 27 H 0.05 1.28 8.10 -51.93 -0.42 0.86 16 28 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 29 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 30 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 31 H 0.08 0.74 8.10 -51.93 -0.42 0.32 16 32 H 0.10 0.79 8.12 -51.93 -0.42 0.37 16 33 H 0.08 0.49 8.06 -51.93 -0.42 0.08 16 34 H 0.07 0.42 8.05 -51.93 -0.42 0.00 16 35 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 37 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 38 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 39 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 40 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.07 0.40 8.03 -51.93 -0.42 -0.02 16 42 H 0.08 0.66 8.04 -51.93 -0.42 0.24 16 43 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 348.43 15.07 5.25 5.25 Total: -1.00 -34.04 348.43 -9.69 -43.73 By element: Atomic # 1 Polarization: 1.76 SS G_CDS: -7.97 Total: -6.21 kcal Atomic # 6 Polarization: -10.12 SS G_CDS: -2.14 Total: -12.26 kcal Atomic # 7 Polarization: -36.22 SS G_CDS: 0.09 Total: -36.13 kcal Atomic # 8 Polarization: -11.79 SS G_CDS: 0.09 Total: -11.70 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -34.04 -9.69 -43.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594351901.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.831 kcal (2) G-P(sol) polarization free energy of solvation -34.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds