Wall clock time and date at job start Mon Mar 30 2020 06:57:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99934 * 2 1 4 4 H 1.48507 * 109.47188 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.47093 * 299.99480 * 3 2 1 6 6 H 1.48499 * 109.47553 * 59.99613 * 3 2 1 7 7 C 1.37885 * 120.00255 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99823 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99505 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.46839 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47216 * 180.02562 * 10 9 7 12 12 C 1.50697 * 109.47348 * 179.97438 * 11 10 9 13 13 O 1.21291 * 120.00074 * 0.02562 * 12 11 10 14 14 N 1.34774 * 120.00455 * 179.97438 * 12 11 10 15 15 C 1.47575 * 134.49511 * 180.02562 * 14 12 11 16 16 C 1.53952 * 86.11843 * 155.35978 * 15 14 12 17 17 C 1.52994 * 113.74232 * 137.95221 * 16 15 14 18 18 C 1.54961 * 110.92578 * 66.53990 * 17 16 15 19 19 C 1.54270 * 104.16191 * 156.29427 * 18 17 16 20 20 C 1.53869 * 106.63967 * 336.44607 * 19 18 17 21 21 C 1.54268 * 106.60115 * 359.97438 * 20 19 18 22 22 C 1.47581 * 134.49093 * 359.97438 * 14 12 11 23 23 H 0.97002 * 120.00181 * 0.02562 * 1 2 3 24 24 H 1.09004 * 109.46727 * 60.00090 * 9 7 2 25 25 H 1.08996 * 109.47326 * 300.00217 * 9 7 2 26 26 H 1.09001 * 109.47157 * 59.99784 * 10 9 7 27 27 H 1.09007 * 109.47234 * 299.99829 * 10 9 7 28 28 H 1.08996 * 109.47222 * 59.99952 * 11 10 9 29 29 H 1.09000 * 109.46949 * 299.99775 * 11 10 9 30 30 H 1.08995 * 113.77292 * 41.05850 * 15 14 12 31 31 H 1.09002 * 113.76809 * 269.65876 * 15 14 12 32 32 H 1.09000 * 113.74075 * 269.15132 * 16 15 14 33 33 H 1.09001 * 110.67554 * 303.23074 * 17 16 15 34 34 H 1.08997 * 110.47708 * 37.64024 * 18 17 16 35 35 H 1.09002 * 110.53308 * 274.97416 * 18 17 16 36 36 H 1.09002 * 110.03399 * 217.13605 * 19 18 17 37 37 H 1.08995 * 110.02943 * 95.75505 * 19 18 17 38 38 H 1.08999 * 110.03405 * 119.26051 * 20 19 18 39 39 H 1.09001 * 110.03705 * 240.64196 * 20 19 18 40 40 H 1.08997 * 110.48788 * 142.28685 * 21 20 19 41 41 H 1.09000 * 110.48806 * 264.79985 * 21 20 19 42 42 H 1.08998 * 113.77201 * 90.33673 * 22 14 12 43 43 H 1.09004 * 113.77124 * 318.94358 * 22 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4803 -4.9871 -0.0001 12 6 2.4596 -6.1325 -0.0007 13 8 3.6521 -5.9109 -0.0002 14 7 2.0104 -7.4032 -0.0009 15 6 2.6582 -8.7292 -0.0009 16 6 1.3580 -9.2484 0.6394 17 6 0.8844 -10.5881 0.0723 18 6 1.8759 -11.7232 0.4326 19 6 1.0225 -13.0064 0.3618 20 6 -0.4397 -12.5753 0.5714 21 6 -0.4247 -11.0446 0.7631 22 6 0.6731 -8.0275 0.0000 23 1 -0.4850 0.8400 -0.0004 24 1 0.6248 -2.5570 -0.8897 25 1 0.6240 -2.5567 0.8902 26 1 2.8720 -3.6043 0.8905 27 1 2.8720 -3.6044 -0.8895 28 1 0.8540 -5.0446 -0.8903 29 1 0.8534 -5.0451 0.8897 30 1 3.5269 -8.7939 0.6543 31 1 2.8458 -9.1265 -0.9985 32 1 1.3668 -9.2276 1.7291 33 1 0.7489 -10.5228 -1.0073 34 1 2.2684 -11.5812 1.4395 35 1 2.6888 -11.7653 -0.2923 36 1 1.3238 -13.6991 1.1477 37 1 1.1366 -13.4773 -0.6145 38 1 -1.0350 -12.8362 -0.3036 39 1 -0.8483 -13.0593 1.4585 40 1 -1.2896 -10.5911 0.2791 41 1 -0.4066 -10.7931 1.8235 42 1 0.2767 -8.2183 -0.9972 43 1 -0.0427 -7.5319 0.6560 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594351901.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:39 Heat of formation + Delta-G solvation = -60.178546 kcal Electronic energy + Delta-G solvation = -19542.238234 eV Core-core repulsion = 16586.069590 eV Total energy + Delta-G solvation = -2956.168644 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.45333 -39.58487 -37.86541 -36.13457 -34.05202 -32.00236 -29.93827 -29.51324 -28.02860 -27.08892 -25.48609 -22.89215 -21.86116 -20.95835 -20.75702 -19.92956 -18.53662 -17.91022 -17.16345 -16.69962 -16.49531 -16.40363 -16.25498 -15.09151 -14.65513 -14.55057 -14.24996 -14.20626 -13.96609 -13.73253 -13.60205 -13.15208 -12.78931 -12.65599 -12.56538 -12.43142 -12.39740 -12.03452 -11.84805 -11.74163 -11.60253 -11.47433 -11.39908 -11.26329 -11.16965 -11.16078 -10.63477 -10.56307 -9.70394 -8.21818 -6.31968 1.38624 1.38705 1.52892 1.59188 1.86248 2.40660 3.10901 3.25063 3.55457 3.75286 3.86861 4.03100 4.10158 4.17310 4.19490 4.27071 4.50213 4.54364 4.62909 4.66643 4.68329 4.70527 4.75954 4.80732 4.90897 4.92495 4.94087 4.99468 5.08263 5.12745 5.16538 5.20631 5.28448 5.38937 5.44021 5.51460 5.59882 5.61901 5.71947 5.83965 6.25601 6.67058 6.83033 7.14165 7.36681 8.90040 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.052007 B = 0.002736 C = 0.002623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 538.262921 B =10230.036716 C =10673.396977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.003 3.997 3 Si 0.964 3.036 4 H -0.269 1.269 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.548 4.548 8 H 0.050 0.950 9 C 0.028 3.972 10 C -0.082 4.082 11 C -0.122 4.122 12 C 0.531 3.469 13 O -0.592 6.592 14 N -0.655 5.655 15 C 0.102 3.898 16 C -0.093 4.093 17 C -0.077 4.077 18 C -0.121 4.121 19 C -0.126 4.126 20 C -0.127 4.127 21 C -0.119 4.119 22 C 0.103 3.897 23 H 0.265 0.735 24 H 0.001 0.999 25 H 0.001 0.999 26 H 0.039 0.961 27 H 0.039 0.961 28 H 0.103 0.897 29 H 0.104 0.896 30 H 0.068 0.932 31 H 0.094 0.906 32 H 0.104 0.896 33 H 0.086 0.914 34 H 0.065 0.935 35 H 0.067 0.933 36 H 0.062 0.938 37 H 0.064 0.936 38 H 0.064 0.936 39 H 0.063 0.937 40 H 0.072 0.928 41 H 0.067 0.933 42 H 0.105 0.895 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.096 -28.529 0.685 28.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.195 4.195 3 Si 0.788 3.212 4 H -0.193 1.193 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.586 4.586 8 H 0.069 0.931 9 C -0.009 4.009 10 C -0.120 4.120 11 C -0.161 4.161 12 C 0.322 3.678 13 O -0.473 6.473 14 N -0.390 5.390 15 C -0.020 4.020 16 C -0.111 4.111 17 C -0.096 4.096 18 C -0.158 4.158 19 C -0.164 4.164 20 C -0.164 4.164 21 C -0.156 4.156 22 C -0.018 4.018 23 H 0.074 0.926 24 H 0.020 0.980 25 H 0.020 0.980 26 H 0.058 0.942 27 H 0.058 0.942 28 H 0.121 0.879 29 H 0.122 0.878 30 H 0.087 0.913 31 H 0.112 0.888 32 H 0.122 0.878 33 H 0.104 0.896 34 H 0.083 0.917 35 H 0.085 0.915 36 H 0.081 0.919 37 H 0.082 0.918 38 H 0.083 0.917 39 H 0.082 0.918 40 H 0.091 0.909 41 H 0.085 0.915 42 H 0.123 0.877 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -2.551 -28.109 0.688 28.233 hybrid contribution 0.468 1.123 -0.038 1.218 sum -2.082 -26.985 0.650 27.073 Atomic orbital electron populations 1.70072 1.07491 1.27794 1.51556 1.25924 0.95866 1.03115 0.94618 0.85424 0.78815 0.78863 0.78102 1.19319 1.19930 1.19934 1.21706 0.93313 0.92787 1.50787 0.93146 1.19005 0.94113 0.92288 0.95540 1.21171 0.97676 0.92982 1.00179 1.21589 0.97780 0.91544 1.05218 1.20829 0.88999 0.83544 0.74403 1.90650 1.19257 1.84831 1.52601 1.50249 1.12130 1.03861 1.72772 1.23392 0.97869 0.79208 1.01496 1.23039 0.93588 0.93682 1.00840 1.22086 0.95459 0.91772 1.00259 1.22409 0.97681 0.94004 1.01725 1.22137 0.94986 0.97480 1.01781 1.22144 0.96639 0.95885 1.01761 1.22409 0.97087 0.95313 1.00809 1.23603 0.85416 0.90374 1.02448 0.92588 0.98049 0.98015 0.94192 0.94237 0.87862 0.87825 0.91335 0.88779 0.87820 0.89557 0.91654 0.91463 0.91892 0.91758 0.91676 0.91830 0.90942 0.91451 0.87741 0.88782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.00 13.29 21.45 0.28 -56.71 16 2 C 0.00 0.16 5.46 84.66 0.46 0.62 16 3 Si 0.96 45.84 29.54 68.60 2.03 47.87 16 4 H -0.27 -12.53 7.11 99.48 0.71 -11.83 16 5 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 6 H -0.27 -12.52 7.11 99.48 0.71 -11.82 16 7 C -0.55 -32.99 9.11 25.60 0.23 -32.75 16 8 H 0.05 3.02 7.74 -2.91 -0.02 2.99 16 9 C 0.03 1.51 4.97 29.85 0.15 1.66 16 10 C -0.08 -3.81 4.44 30.59 0.14 -3.67 16 11 C -0.12 -4.32 5.45 29.85 0.16 -4.16 16 12 C 0.53 18.88 8.06 87.66 0.71 19.59 16 13 O -0.59 -26.58 16.71 -3.06 -0.05 -26.63 16 14 N -0.66 -16.66 3.61 -836.64 -3.02 -19.68 16 15 C 0.10 1.96 8.14 86.48 0.70 2.66 16 16 C -0.09 -1.20 3.30 -10.15 -0.03 -1.24 16 17 C -0.08 -0.74 2.60 -9.48 -0.02 -0.76 16 18 C -0.12 -1.18 6.04 31.70 0.19 -0.99 16 19 C -0.13 -1.15 6.80 31.32 0.21 -0.94 16 20 C -0.13 -1.12 6.80 31.32 0.21 -0.90 16 21 C -0.12 -1.06 6.27 31.67 0.20 -0.86 16 22 C 0.10 1.61 8.18 86.47 0.71 2.31 16 23 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16 24 H 0.00 0.06 8.14 -2.39 -0.02 0.05 16 25 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 26 H 0.04 1.94 8.10 -2.39 -0.02 1.92 16 27 H 0.04 1.92 8.10 -2.38 -0.02 1.90 16 28 H 0.10 3.29 8.14 -2.39 -0.02 3.27 16 29 H 0.10 3.30 8.14 -2.39 -0.02 3.28 16 30 H 0.07 1.45 8.14 -2.39 -0.02 1.44 16 31 H 0.09 1.56 8.10 -2.39 -0.02 1.54 16 32 H 0.10 1.37 8.12 -2.39 -0.02 1.35 16 33 H 0.09 0.78 8.06 -2.39 -0.02 0.77 16 34 H 0.06 0.68 8.05 -2.39 -0.02 0.66 16 35 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 36 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 37 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 38 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 39 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 40 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 41 H 0.07 0.63 8.03 -2.39 -0.02 0.61 16 42 H 0.10 1.28 8.04 -2.39 -0.02 1.26 16 43 H 0.09 1.32 8.14 -2.39 -0.02 1.31 16 Total: -1.00 -74.15 348.43 4.20 -69.95 By element: Atomic # 1 Polarization: 3.69 SS G_CDS: 0.94 Total: 4.63 kcal Atomic # 6 Polarization: -23.45 SS G_CDS: 4.02 Total: -19.43 kcal Atomic # 7 Polarization: -73.66 SS G_CDS: -2.73 Total: -76.39 kcal Atomic # 8 Polarization: -26.58 SS G_CDS: -0.05 Total: -26.63 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 2.03 Total: 47.87 kcal Total: -74.15 4.20 -69.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594351901.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.772 kcal (2) G-P(sol) polarization free energy of solvation -74.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds