Wall clock time and date at job start Mon Mar 30 2020 07:51:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 119.99863 * 2 1 4 4 H 1.48497 * 109.46901 * 269.99741 * 3 2 1 5 5 H 1.48488 * 109.47487 * 30.00181 * 3 2 1 6 6 H 1.48503 * 109.47026 * 150.00561 * 3 2 1 7 7 C 1.37874 * 120.00305 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99767 * 0.02562 * 7 2 1 9 9 C 1.50699 * 120.00270 * 179.97438 * 7 2 1 10 10 C 1.53006 * 109.46866 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.46623 * 179.97438 * 10 9 7 12 12 C 1.50706 * 109.46953 * 179.97438 * 11 10 9 13 13 O 1.21279 * 119.99692 * 0.02562 * 12 11 10 14 14 N 1.34777 * 120.00146 * 180.02562 * 12 11 10 15 15 C 1.46920 * 120.63050 * 359.71661 * 14 12 11 16 16 C 1.53621 * 108.54355 * 126.37111 * 15 14 12 17 17 C 1.53043 * 109.24177 * 54.85891 * 16 15 14 18 18 C 1.53049 * 109.53527 * 298.50995 * 17 16 15 19 19 H 1.08996 * 109.52442 * 301.40282 * 18 17 16 20 20 C 1.52998 * 109.49547 * 181.31376 * 18 17 16 21 21 C 1.53000 * 117.49506 * 128.78711 * 20 18 17 22 22 C 1.53001 * 117.49768 * 60.16461 * 20 18 17 23 23 C 1.46923 * 120.62891 * 180.02562 * 14 12 11 24 24 H 0.97002 * 120.00008 * 359.97438 * 1 2 3 25 25 H 1.08993 * 109.47512 * 60.00342 * 9 7 2 26 26 H 1.09000 * 109.47247 * 300.00051 * 9 7 2 27 27 H 1.09000 * 109.47050 * 299.99952 * 10 9 7 28 28 H 1.09001 * 109.46801 * 60.00064 * 10 9 7 29 29 H 1.09000 * 109.47486 * 299.99829 * 11 10 9 30 30 H 1.09001 * 109.47362 * 60.00551 * 11 10 9 31 31 H 1.09003 * 109.58949 * 246.21035 * 15 14 12 32 32 H 1.09006 * 109.58937 * 6.63210 * 15 14 12 33 33 H 1.08999 * 109.63648 * 294.86515 * 16 15 14 34 34 H 1.09002 * 109.45661 * 174.74216 * 16 15 14 35 35 H 1.08996 * 109.45823 * 178.49023 * 17 16 15 36 36 H 1.08995 * 109.44631 * 58.52091 * 17 16 15 37 37 H 1.08998 * 115.55252 * 274.49560 * 20 18 17 38 38 H 1.09003 * 117.50041 * 359.97438 * 21 20 18 39 39 H 1.09000 * 117.50072 * 145.02469 * 21 20 18 40 40 H 1.09000 * 117.50047 * 214.97556 * 22 20 18 41 41 H 1.09002 * 117.49748 * 359.97438 * 22 20 18 42 42 H 1.08998 * 109.58857 * 353.36937 * 23 14 12 43 43 H 1.09004 * 109.58487 * 113.65142 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4402 0.6999 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0000 10 6 4.0215 -2.6366 0.0001 11 6 5.5515 -2.6365 -0.0012 12 6 6.0539 -4.0573 -0.0004 13 8 5.2657 -4.9791 0.0005 14 7 7.3790 -4.3036 -0.0008 15 6 8.3459 -3.1975 -0.0081 16 6 9.3192 -3.3917 1.1644 17 6 9.9536 -4.7811 1.0686 18 6 8.8624 -5.8498 1.1669 19 1 8.3267 -5.7379 2.1095 20 6 9.5008 -7.2388 1.1039 21 6 9.1246 -8.2394 2.1984 22 6 10.5147 -7.6002 2.1912 23 6 7.8839 -5.6834 -0.0006 24 1 -0.4850 0.8401 0.0004 25 1 3.8753 -0.6796 0.8894 26 1 3.8746 -0.6807 -0.8905 27 1 3.6585 -3.1502 0.8903 28 1 3.6578 -3.1505 -0.8897 29 1 5.9142 -2.1230 -0.8916 30 1 5.9156 -2.1224 0.8884 31 1 8.8971 -3.2002 -0.9485 32 1 7.8186 -2.2503 0.1059 33 1 8.7795 -3.3024 2.1072 34 1 10.0993 -2.6317 1.1185 35 1 10.6650 -4.9125 1.8839 36 1 10.4722 -4.8783 0.1149 37 1 9.6762 -7.6306 0.1020 38 1 8.4226 -7.9080 2.9636 39 1 9.0523 -9.2899 1.9168 40 1 11.3568 -8.2302 1.9048 41 1 10.7272 -6.8482 2.9512 42 1 7.0516 -6.3771 0.1184 43 1 8.3960 -5.8851 -0.9414 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594359971.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:51:31 Heat of formation + Delta-G solvation = -58.613269 kcal Electronic energy + Delta-G solvation = -20089.045596 eV Core-core repulsion = 17132.944827 eV Total energy + Delta-G solvation = -2956.100769 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.31767 -39.34818 -37.28849 -36.17282 -34.21217 -33.48383 -32.01926 -30.11916 -26.75649 -25.55422 -24.38921 -23.25431 -22.44347 -21.84108 -20.84952 -19.85920 -18.82939 -18.07581 -17.05170 -16.83667 -16.45788 -16.15067 -15.47494 -15.29835 -15.12961 -14.88038 -14.69093 -14.40706 -14.01720 -13.82115 -13.65795 -13.21216 -13.02256 -12.64515 -12.51838 -12.43940 -12.20709 -11.83735 -11.78359 -11.77421 -11.68876 -11.57489 -11.50593 -11.30447 -11.22766 -10.74921 -10.72201 -10.69904 -9.61710 -8.27560 -6.33525 1.38832 1.42779 1.54904 1.62295 2.01099 2.39668 2.89401 3.07464 3.60049 3.61716 3.83505 3.95060 4.05536 4.09271 4.13167 4.18924 4.23142 4.31967 4.38635 4.52856 4.58834 4.74283 4.76277 4.79938 4.86843 4.89135 4.91668 4.94573 5.02576 5.03431 5.04627 5.14901 5.24408 5.26272 5.35483 5.50323 5.52684 5.59262 5.61851 5.67965 6.30244 6.39944 6.75131 7.19405 7.30911 8.90278 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.036850 B = 0.003425 C = 0.003242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.650347 B = 8172.421072 C = 8634.223629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.958 5.958 2 C -0.004 4.004 3 Si 0.963 3.037 4 H -0.263 1.263 5 H -0.286 1.286 6 H -0.234 1.234 7 C -0.541 4.541 8 H 0.018 0.982 9 C -0.007 4.007 10 C -0.080 4.080 11 C -0.128 4.128 12 C 0.509 3.491 13 O -0.592 6.592 14 N -0.612 5.612 15 C 0.096 3.904 16 C -0.133 4.133 17 C -0.107 4.107 18 C -0.063 4.063 19 H 0.053 0.947 20 C -0.151 4.151 21 C -0.195 4.195 22 C -0.163 4.163 23 C 0.116 3.884 24 H 0.267 0.733 25 H 0.031 0.969 26 H 0.030 0.970 27 H 0.033 0.967 28 H 0.035 0.965 29 H 0.117 0.883 30 H 0.114 0.886 31 H 0.089 0.911 32 H 0.099 0.901 33 H 0.056 0.944 34 H 0.102 0.898 35 H 0.076 0.924 36 H 0.077 0.923 37 H 0.112 0.888 38 H 0.082 0.918 39 H 0.098 0.902 40 H 0.107 0.893 41 H 0.097 0.903 42 H 0.060 0.940 43 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.376 -8.404 2.168 31.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.200 4.200 3 Si 0.785 3.215 4 H -0.188 1.188 5 H -0.212 1.212 6 H -0.157 1.157 7 C -0.579 4.579 8 H 0.036 0.964 9 C -0.045 4.045 10 C -0.119 4.119 11 C -0.168 4.168 12 C 0.299 3.701 13 O -0.472 6.472 14 N -0.345 5.345 15 C -0.026 4.026 16 C -0.171 4.171 17 C -0.144 4.144 18 C -0.082 4.082 19 H 0.072 0.928 20 C -0.169 4.169 21 C -0.232 4.232 22 C -0.200 4.200 23 C -0.006 4.006 24 H 0.075 0.925 25 H 0.049 0.951 26 H 0.049 0.951 27 H 0.052 0.948 28 H 0.054 0.946 29 H 0.135 0.865 30 H 0.132 0.868 31 H 0.108 0.892 32 H 0.117 0.883 33 H 0.074 0.926 34 H 0.120 0.880 35 H 0.094 0.906 36 H 0.096 0.904 37 H 0.130 0.870 38 H 0.101 0.899 39 H 0.117 0.883 40 H 0.125 0.875 41 H 0.115 0.885 42 H 0.079 0.921 43 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 29.833 -8.783 2.168 31.174 hybrid contribution -0.937 0.164 0.050 0.952 sum 28.896 -8.618 2.218 30.235 Atomic orbital electron populations 1.70111 1.08745 1.28321 1.52688 1.26222 0.95762 1.04207 0.93792 0.85474 0.79685 0.76885 0.79455 1.18797 1.21217 1.15734 1.21561 0.92739 0.92830 1.50792 0.96402 1.19532 0.93440 0.94132 0.97361 1.21049 0.93446 0.97254 1.00104 1.21740 0.96254 0.92653 1.06115 1.21250 0.82110 0.92164 0.74572 1.90664 1.56421 1.48149 1.51986 1.48265 1.05132 1.08299 1.72794 1.22209 0.90795 0.89301 1.00266 1.22018 0.99005 0.98355 0.97730 1.21537 0.96690 0.92758 1.03419 1.21015 0.95723 0.94140 0.97371 0.92800 1.22232 1.03902 0.94913 0.95866 1.23075 0.99413 0.98816 1.01854 1.22984 0.92676 1.03271 1.01027 1.21615 0.97245 0.82681 0.99081 0.92481 0.95073 0.95129 0.94789 0.94643 0.86469 0.86760 0.89237 0.88299 0.92562 0.88004 0.90550 0.90450 0.86982 0.89934 0.88326 0.87513 0.88455 0.92142 0.90111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -62.45 13.96 21.45 0.30 -62.15 16 2 C 0.00 -0.24 5.47 84.65 0.46 0.22 16 3 Si 0.96 44.06 27.47 68.60 1.88 45.95 16 4 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 5 H -0.29 -12.92 7.11 99.48 0.71 -12.21 16 6 H -0.23 -9.50 6.54 99.48 0.65 -8.85 16 7 C -0.54 -33.02 9.66 25.60 0.25 -32.77 16 8 H 0.02 1.22 7.99 -2.91 -0.02 1.20 16 9 C -0.01 -0.35 4.04 29.85 0.12 -0.23 16 10 C -0.08 -3.47 4.44 30.60 0.14 -3.33 16 11 C -0.13 -3.87 4.05 29.85 0.12 -3.75 16 12 C 0.51 16.51 7.70 87.66 0.67 17.18 16 13 O -0.59 -25.31 15.39 -3.03 -0.05 -25.36 16 14 N -0.61 -14.25 2.97 -817.99 -2.43 -16.67 16 15 C 0.10 1.38 6.37 86.51 0.55 1.93 16 16 C -0.13 -1.53 6.10 30.82 0.19 -1.34 16 17 C -0.11 -1.22 5.03 30.63 0.15 -1.06 16 18 C -0.06 -1.04 2.49 -10.70 -0.03 -1.07 16 19 H 0.05 1.12 7.90 -2.39 -0.02 1.10 16 20 C -0.15 -2.12 5.15 -10.79 -0.06 -2.18 16 21 C -0.19 -2.92 10.18 30.60 0.31 -2.61 16 22 C -0.16 -1.88 9.72 30.60 0.30 -1.58 16 23 C 0.12 2.50 5.70 86.38 0.49 2.99 16 24 H 0.27 16.04 8.31 -92.71 -0.77 15.27 16 25 H 0.03 1.38 7.20 -2.39 -0.02 1.36 16 26 H 0.03 1.34 7.57 -2.39 -0.02 1.32 16 27 H 0.03 1.60 8.10 -2.39 -0.02 1.58 16 28 H 0.03 1.66 8.10 -2.39 -0.02 1.64 16 29 H 0.12 2.87 7.93 -2.39 -0.02 2.85 16 30 H 0.11 2.86 7.70 -2.39 -0.02 2.84 16 31 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.10 1.29 5.93 -2.38 -0.01 1.28 16 33 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 35 H 0.08 0.75 7.25 -2.39 -0.02 0.73 16 36 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 37 H 0.11 1.43 8.11 -2.39 -0.02 1.41 16 38 H 0.08 1.42 8.05 -2.39 -0.02 1.40 16 39 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 40 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 41 H 0.10 1.06 7.61 -2.39 -0.02 1.04 16 42 H 0.06 1.70 7.01 -2.39 -0.02 1.68 16 43 H 0.08 1.45 8.14 -2.38 -0.02 1.43 16 Total: -1.00 -78.30 338.39 4.29 -74.01 By element: Atomic # 1 Polarization: 10.92 SS G_CDS: 0.90 Total: 11.82 kcal Atomic # 6 Polarization: -31.28 SS G_CDS: 3.67 Total: -27.60 kcal Atomic # 7 Polarization: -76.70 SS G_CDS: -2.13 Total: -78.82 kcal Atomic # 8 Polarization: -25.31 SS G_CDS: -0.05 Total: -25.36 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 1.88 Total: 45.95 kcal Total: -78.30 4.29 -74.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594359971.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.400 kcal (2) G-P(sol) polarization free energy of solvation -78.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds