Wall clock time and date at job start Mon Mar 30 2020 06:35:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 119.99788 * 2 1 4 4 H 1.48494 * 109.47589 * 240.00281 * 3 2 1 5 5 H 1.48504 * 109.47356 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47017 * 120.00264 * 3 2 1 7 7 C 1.37876 * 120.00388 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00039 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99549 * 359.97438 * 7 2 1 10 10 C 1.53005 * 109.46907 * 180.02562 * 9 7 2 11 11 C 1.52992 * 109.47274 * 179.97438 * 10 9 7 12 12 C 1.50700 * 109.47257 * 179.97438 * 11 10 9 13 13 O 1.21279 * 120.00113 * 0.02562 * 12 11 10 14 14 N 1.34784 * 119.99961 * 180.02562 * 12 11 10 15 15 C 1.46927 * 120.62995 * 359.72079 * 14 12 11 16 16 C 1.53626 * 108.53906 * 126.36585 * 15 14 12 17 17 C 1.53041 * 109.24183 * 54.85853 * 16 15 14 18 18 C 1.52998 * 109.46043 * 178.48489 * 17 16 15 19 19 C 1.53002 * 117.50085 * 248.81468 * 18 17 16 20 20 C 1.53000 * 117.49846 * 180.15182 * 18 17 16 21 21 C 1.53036 * 109.53807 * 298.50777 * 17 16 15 22 22 C 1.46923 * 120.62964 * 179.97438 * 14 12 11 23 23 H 0.96998 * 120.00131 * 359.97438 * 1 2 3 24 24 H 1.08999 * 109.47707 * 60.00373 * 9 7 2 25 25 H 1.09000 * 109.47092 * 299.99406 * 9 7 2 26 26 H 1.09004 * 109.47166 * 59.99374 * 10 9 7 27 27 H 1.09005 * 109.46988 * 299.99761 * 10 9 7 28 28 H 1.09004 * 109.47330 * 59.99726 * 11 10 9 29 29 H 1.08997 * 109.47279 * 300.00213 * 11 10 9 30 30 H 1.08998 * 109.58645 * 246.19910 * 15 14 12 31 31 H 1.09001 * 109.58579 * 6.63067 * 15 14 12 32 32 H 1.08990 * 109.63926 * 294.86483 * 16 15 14 33 33 H 1.09009 * 109.45677 * 174.73785 * 16 15 14 34 34 H 1.09009 * 109.44893 * 58.52020 * 17 16 15 35 35 H 1.09004 * 115.55001 * 34.48700 * 18 17 16 36 36 H 1.09001 * 117.49645 * 359.97438 * 19 18 17 37 37 H 1.09000 * 117.50110 * 145.02205 * 19 18 17 38 38 H 1.08995 * 117.50405 * 214.98192 * 20 18 17 39 39 H 1.09004 * 117.50010 * 0.02562 * 20 18 17 40 40 H 1.09001 * 109.49825 * 301.41219 * 21 17 16 41 41 H 1.09001 * 109.52568 * 181.32976 * 21 17 16 42 42 H 1.09007 * 109.58781 * 353.37617 * 22 14 12 43 43 H 1.08998 * 109.58580 * 113.65434 * 22 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6966 -1.2124 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 6 1.4805 -4.9870 0.0001 12 6 2.4598 -6.1324 -0.0005 13 8 3.6522 -5.9108 -0.0009 14 7 2.0106 -7.4032 -0.0006 15 6 0.5691 -7.6876 0.0060 16 6 0.2512 -8.6273 -1.1670 17 6 1.1374 -9.8713 -1.0711 18 6 0.7983 -10.8281 -2.2159 19 6 0.1125 -12.1472 -1.8546 20 6 1.5790 -12.1416 -2.2934 21 6 2.6084 -9.4606 -1.1686 22 6 2.9530 -8.5303 -0.0018 23 1 -0.4850 0.8400 0.0004 24 1 0.6241 -2.5567 -0.8903 25 1 0.6248 -2.5571 0.8897 26 1 2.8721 -3.6042 0.8894 27 1 2.8720 -3.6043 -0.8906 28 1 0.8535 -5.0451 -0.8896 29 1 0.8541 -5.0445 0.8903 30 1 0.2955 -8.1666 0.9461 31 1 0.0126 -6.7573 -0.1081 32 1 0.4442 -8.1149 -2.1095 33 1 -0.7970 -8.9229 -1.1216 34 1 0.9618 -10.3694 -0.1175 35 1 0.5152 -10.3547 -3.1561 36 1 -0.0968 -12.3336 -0.8012 37 1 -0.6215 -12.5418 -2.5571 38 1 1.8092 -12.5326 -3.2845 39 1 2.3339 -12.3244 -1.5286 40 1 2.7792 -8.9404 -2.1111 41 1 3.2384 -10.3490 -1.1240 42 1 3.9699 -8.1563 -0.1210 43 1 2.8721 -9.0753 0.9387 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594363702.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:29 Heat of formation + Delta-G solvation = -42.594720 kcal Electronic energy + Delta-G solvation = -19943.736275 eV Core-core repulsion = 16988.330122 eV Total energy + Delta-G solvation = -2955.406152 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.20298 -38.51027 -36.32535 -34.21008 -32.57574 -31.97139 -31.16440 -27.94191 -25.84228 -24.10958 -23.23091 -22.43453 -21.62659 -20.51998 -19.95535 -18.77588 -16.98037 -16.23593 -15.78503 -15.56859 -15.45988 -14.94060 -14.42794 -14.29135 -14.12290 -13.58372 -13.27829 -12.85231 -12.65991 -12.56884 -12.20424 -11.87871 -11.75977 -11.41962 -11.34103 -11.22670 -11.07047 -10.96839 -10.76217 -10.57505 -10.52260 -10.37513 -10.09098 -9.63711 -9.57906 -9.22141 -8.99290 -8.58208 -8.29444 -5.95394 -3.96686 2.94251 3.10768 3.38287 3.41461 3.45541 3.46531 4.22466 4.46835 4.51081 4.52961 4.67648 4.76425 4.95991 4.99039 5.04667 5.13317 5.18663 5.30609 5.38481 5.40566 5.46521 5.54696 5.64187 5.66861 5.72470 5.74810 5.77053 5.78662 5.84946 5.88680 5.95061 6.19729 6.29063 6.59772 6.76298 6.97158 7.19481 7.53066 7.73532 7.86769 8.05498 8.46628 8.49897 9.10228 9.67077 11.16138 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.044093 B = 0.003062 C = 0.002947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.875521 B = 9142.255834 C = 9498.774273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.518 4.518 8 H 0.055 0.945 9 C 0.021 3.979 10 C -0.095 4.095 11 C -0.137 4.137 12 C 0.515 3.485 13 O -0.539 6.539 14 N -0.622 5.622 15 C 0.106 3.894 16 C -0.128 4.128 17 C -0.056 4.056 18 C -0.146 4.146 19 C -0.181 4.181 20 C -0.181 4.181 21 C -0.125 4.125 22 C 0.110 3.890 23 H 0.260 0.740 24 H 0.015 0.985 25 H 0.015 0.985 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.067 0.933 31 H 0.093 0.907 32 H 0.070 0.930 33 H 0.076 0.924 34 H 0.071 0.929 35 H 0.103 0.897 36 H 0.093 0.907 37 H 0.091 0.909 38 H 0.092 0.908 39 H 0.094 0.906 40 H 0.068 0.932 41 H 0.072 0.928 42 H 0.091 0.909 43 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.429 -25.123 -2.476 25.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.556 4.556 8 H 0.074 0.926 9 C -0.016 4.016 10 C -0.133 4.133 11 C -0.177 4.177 12 C 0.305 3.695 13 O -0.416 6.416 14 N -0.357 5.357 15 C -0.017 4.017 16 C -0.166 4.166 17 C -0.074 4.074 18 C -0.164 4.164 19 C -0.218 4.218 20 C -0.218 4.218 21 C -0.164 4.164 22 C -0.013 4.013 23 H 0.070 0.930 24 H 0.034 0.966 25 H 0.034 0.966 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.106 0.894 29 H 0.105 0.895 30 H 0.085 0.915 31 H 0.111 0.889 32 H 0.088 0.912 33 H 0.094 0.906 34 H 0.089 0.911 35 H 0.121 0.879 36 H 0.111 0.889 37 H 0.110 0.890 38 H 0.110 0.890 39 H 0.112 0.888 40 H 0.086 0.914 41 H 0.090 0.910 42 H 0.109 0.891 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.929 -24.861 -2.472 25.001 hybrid contribution 0.263 0.762 -0.060 0.809 sum -0.665 -24.099 -2.532 24.241 Atomic orbital electron populations 1.69950 1.06031 1.26629 1.51199 1.25016 0.94856 0.99221 0.95401 0.86653 0.79573 0.83076 0.78685 1.20233 1.21340 1.20233 1.21243 0.93164 0.91048 1.50183 0.92638 1.19123 0.93951 0.91444 0.97068 1.21455 0.98636 0.91577 1.01647 1.21861 0.98216 0.94151 1.03467 1.21272 0.90207 0.83511 0.74501 1.90656 1.17404 1.84208 1.49288 1.48235 1.06762 1.05791 1.74905 1.21837 0.81056 1.00523 0.98272 1.22027 0.99788 0.95545 0.99221 1.20735 0.95019 0.94707 0.96982 1.22359 1.04499 0.89222 1.00333 1.23022 0.95499 1.01234 1.02022 1.22944 0.94731 1.01407 1.02735 1.21929 0.95873 0.99241 0.99308 1.21511 0.94947 0.87188 0.97650 0.93027 0.96638 0.96638 0.92743 0.92753 0.89450 0.89454 0.91518 0.88897 0.91168 0.90576 0.91064 0.87852 0.88862 0.89020 0.88995 0.88794 0.91365 0.90953 0.89068 0.92095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.31 13.29 55.43 0.74 -26.57 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 22.22 29.54 -169.99 -5.02 17.20 16 4 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 7 C -0.52 -15.18 9.11 -34.44 -0.31 -15.50 16 8 H 0.06 1.60 7.74 -52.49 -0.41 1.20 16 9 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 10 C -0.10 -2.11 4.44 -26.73 -0.12 -2.23 16 11 C -0.14 -2.36 4.05 -27.89 -0.11 -2.47 16 12 C 0.52 8.75 7.70 -10.98 -0.08 8.66 16 13 O -0.54 -11.21 15.40 5.56 0.09 -11.12 16 14 N -0.62 -8.03 2.97 -172.53 -0.51 -8.54 16 15 C 0.11 1.04 6.37 -3.48 -0.02 1.02 16 16 C -0.13 -1.06 5.36 -26.38 -0.14 -1.20 16 17 C -0.06 -0.44 2.30 -90.58 -0.21 -0.65 16 18 C -0.15 -1.06 5.14 -90.62 -0.47 -1.53 16 19 C -0.18 -1.17 10.18 -26.69 -0.27 -1.44 16 20 C -0.18 -1.21 9.72 -26.69 -0.26 -1.47 16 21 C -0.13 -1.13 5.22 -26.63 -0.14 -1.27 16 22 C 0.11 1.23 6.43 -3.73 -0.02 1.21 16 23 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 24 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 25 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 26 H 0.05 1.25 8.10 -51.93 -0.42 0.83 16 27 H 0.05 1.25 8.10 -51.93 -0.42 0.83 16 28 H 0.09 1.37 7.70 -51.93 -0.40 0.97 16 29 H 0.09 1.36 7.93 -51.93 -0.41 0.95 16 30 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.09 0.91 5.93 -51.93 -0.31 0.60 16 32 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.08 0.53 8.14 -51.92 -0.42 0.11 16 34 H 0.07 0.54 7.90 -51.92 -0.41 0.13 16 35 H 0.10 0.78 8.11 -51.93 -0.42 0.36 16 36 H 0.09 0.57 8.05 -51.93 -0.42 0.16 16 37 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.09 0.60 7.61 -51.93 -0.39 0.21 16 40 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.07 0.56 7.25 -51.93 -0.38 0.18 16 42 H 0.09 1.21 7.01 -51.93 -0.36 0.84 16 43 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 341.98 15.07 5.15 5.15 Total: -1.00 -32.94 341.98 -9.65 -42.59 By element: Atomic # 1 Polarization: 3.89 SS G_CDS: -7.69 Total: -3.80 kcal Atomic # 6 Polarization: -12.51 SS G_CDS: -2.40 Total: -14.90 kcal Atomic # 7 Polarization: -35.34 SS G_CDS: 0.22 Total: -35.11 kcal Atomic # 8 Polarization: -11.21 SS G_CDS: 0.09 Total: -11.12 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -32.94 -9.65 -42.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594363702.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.009 kcal (2) G-P(sol) polarization free energy of solvation -32.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds