Wall clock time and date at job start Mon Mar 30 2020 06:35:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 119.99788 * 2 1 4 4 H 1.48494 * 109.47589 * 240.00281 * 3 2 1 5 5 H 1.48504 * 109.47356 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47017 * 120.00264 * 3 2 1 7 7 C 1.37876 * 120.00388 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00039 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99549 * 359.97438 * 7 2 1 10 10 C 1.53005 * 109.46907 * 180.02562 * 9 7 2 11 11 C 1.52992 * 109.47274 * 179.97438 * 10 9 7 12 12 C 1.50700 * 109.47257 * 179.97438 * 11 10 9 13 13 O 1.21279 * 120.00113 * 0.02562 * 12 11 10 14 14 N 1.34784 * 119.99961 * 180.02562 * 12 11 10 15 15 C 1.46927 * 120.62995 * 359.72079 * 14 12 11 16 16 C 1.53626 * 108.53906 * 126.36585 * 15 14 12 17 17 C 1.53041 * 109.24183 * 54.85853 * 16 15 14 18 18 C 1.52998 * 109.46043 * 178.48489 * 17 16 15 19 19 C 1.53002 * 117.50085 * 248.81468 * 18 17 16 20 20 C 1.53000 * 117.49846 * 180.15182 * 18 17 16 21 21 C 1.53036 * 109.53807 * 298.50777 * 17 16 15 22 22 C 1.46923 * 120.62964 * 179.97438 * 14 12 11 23 23 H 0.96998 * 120.00131 * 359.97438 * 1 2 3 24 24 H 1.08999 * 109.47707 * 60.00373 * 9 7 2 25 25 H 1.09000 * 109.47092 * 299.99406 * 9 7 2 26 26 H 1.09004 * 109.47166 * 59.99374 * 10 9 7 27 27 H 1.09005 * 109.46988 * 299.99761 * 10 9 7 28 28 H 1.09004 * 109.47330 * 59.99726 * 11 10 9 29 29 H 1.08997 * 109.47279 * 300.00213 * 11 10 9 30 30 H 1.08998 * 109.58645 * 246.19910 * 15 14 12 31 31 H 1.09001 * 109.58579 * 6.63067 * 15 14 12 32 32 H 1.08990 * 109.63926 * 294.86483 * 16 15 14 33 33 H 1.09009 * 109.45677 * 174.73785 * 16 15 14 34 34 H 1.09009 * 109.44893 * 58.52020 * 17 16 15 35 35 H 1.09004 * 115.55001 * 34.48700 * 18 17 16 36 36 H 1.09001 * 117.49645 * 359.97438 * 19 18 17 37 37 H 1.09000 * 117.50110 * 145.02205 * 19 18 17 38 38 H 1.08995 * 117.50405 * 214.98192 * 20 18 17 39 39 H 1.09004 * 117.50010 * 0.02562 * 20 18 17 40 40 H 1.09001 * 109.49825 * 301.41219 * 21 17 16 41 41 H 1.09001 * 109.52568 * 181.32976 * 21 17 16 42 42 H 1.09007 * 109.58781 * 353.37617 * 22 14 12 43 43 H 1.08998 * 109.58580 * 113.65434 * 22 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6966 -1.2124 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 6 1.4805 -4.9870 0.0001 12 6 2.4598 -6.1324 -0.0005 13 8 3.6522 -5.9108 -0.0009 14 7 2.0106 -7.4032 -0.0006 15 6 0.5691 -7.6876 0.0060 16 6 0.2512 -8.6273 -1.1670 17 6 1.1374 -9.8713 -1.0711 18 6 0.7983 -10.8281 -2.2159 19 6 0.1125 -12.1472 -1.8546 20 6 1.5790 -12.1416 -2.2934 21 6 2.6084 -9.4606 -1.1686 22 6 2.9530 -8.5303 -0.0018 23 1 -0.4850 0.8400 0.0004 24 1 0.6241 -2.5567 -0.8903 25 1 0.6248 -2.5571 0.8897 26 1 2.8721 -3.6042 0.8894 27 1 2.8720 -3.6043 -0.8906 28 1 0.8535 -5.0451 -0.8896 29 1 0.8541 -5.0445 0.8903 30 1 0.2955 -8.1666 0.9461 31 1 0.0126 -6.7573 -0.1081 32 1 0.4442 -8.1149 -2.1095 33 1 -0.7970 -8.9229 -1.1216 34 1 0.9618 -10.3694 -0.1175 35 1 0.5152 -10.3547 -3.1561 36 1 -0.0968 -12.3336 -0.8012 37 1 -0.6215 -12.5418 -2.5571 38 1 1.8092 -12.5326 -3.2845 39 1 2.3339 -12.3244 -1.5286 40 1 2.7792 -8.9404 -2.1111 41 1 3.2384 -10.3490 -1.1240 42 1 3.9699 -8.1563 -0.1210 43 1 2.8721 -9.0753 0.9387 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594363702.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:28 Heat of formation + Delta-G solvation = -60.526880 kcal Electronic energy + Delta-G solvation = -19944.513871 eV Core-core repulsion = 16988.330122 eV Total energy + Delta-G solvation = -2956.183749 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.28594 -39.39181 -37.21325 -36.14845 -34.15582 -33.25004 -32.11386 -29.71490 -26.94444 -25.64027 -24.26336 -22.99101 -22.69894 -21.87009 -20.91031 -19.90548 -18.53020 -18.02406 -16.88166 -16.77195 -16.47585 -16.29049 -15.61818 -15.39274 -15.07118 -14.69867 -14.50981 -14.11724 -13.87703 -13.81972 -13.53388 -13.27555 -13.09022 -12.62285 -12.51087 -12.42158 -12.36966 -12.15634 -11.91436 -11.74960 -11.63950 -11.56762 -11.45202 -11.26040 -10.98245 -10.73646 -10.61467 -10.54223 -9.63565 -8.20277 -6.30359 1.39337 1.42362 1.50464 1.62367 2.03297 2.41713 2.94136 3.12505 3.58103 3.65048 3.82169 3.96835 4.11033 4.14126 4.20584 4.22587 4.29122 4.35646 4.38747 4.44213 4.65482 4.70047 4.80622 4.84852 4.87926 4.92770 4.95818 4.99855 5.07722 5.10681 5.14884 5.18386 5.20659 5.29961 5.32465 5.52591 5.54322 5.64386 5.74779 5.86003 6.26706 6.39106 6.84555 7.19099 7.38156 8.91131 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.044093 B = 0.003062 C = 0.002947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.875521 B = 9142.255834 C = 9498.774273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.004 3.996 3 Si 0.961 3.039 4 H -0.270 1.270 5 H -0.277 1.277 6 H -0.269 1.269 7 C -0.550 4.550 8 H 0.050 0.950 9 C 0.028 3.972 10 C -0.082 4.082 11 C -0.128 4.128 12 C 0.513 3.487 13 O -0.588 6.588 14 N -0.612 5.612 15 C 0.098 3.902 16 C -0.123 4.123 17 C -0.050 4.050 18 C -0.154 4.154 19 C -0.175 4.175 20 C -0.183 4.183 21 C -0.117 4.117 22 C 0.106 3.894 23 H 0.265 0.735 24 H 0.001 0.999 25 H 0.002 0.998 26 H 0.039 0.961 27 H 0.038 0.962 28 H 0.105 0.895 29 H 0.107 0.893 30 H 0.089 0.911 31 H 0.094 0.906 32 H 0.057 0.943 33 H 0.096 0.904 34 H 0.082 0.918 35 H 0.098 0.902 36 H 0.100 0.900 37 H 0.096 0.904 38 H 0.094 0.906 39 H 0.097 0.903 40 H 0.050 0.950 41 H 0.088 0.912 42 H 0.066 0.934 43 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.142 -26.423 -2.263 26.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.194 4.194 3 Si 0.786 3.214 4 H -0.195 1.195 5 H -0.202 1.202 6 H -0.194 1.194 7 C -0.588 4.588 8 H 0.069 0.931 9 C -0.009 4.009 10 C -0.120 4.120 11 C -0.167 4.167 12 C 0.303 3.697 13 O -0.469 6.469 14 N -0.345 5.345 15 C -0.024 4.024 16 C -0.161 4.161 17 C -0.068 4.068 18 C -0.172 4.172 19 C -0.212 4.212 20 C -0.220 4.220 21 C -0.155 4.155 22 C -0.016 4.016 23 H 0.074 0.926 24 H 0.019 0.981 25 H 0.020 0.980 26 H 0.058 0.942 27 H 0.057 0.943 28 H 0.123 0.877 29 H 0.125 0.875 30 H 0.107 0.893 31 H 0.112 0.888 32 H 0.076 0.924 33 H 0.114 0.886 34 H 0.101 0.899 35 H 0.116 0.884 36 H 0.118 0.882 37 H 0.115 0.885 38 H 0.112 0.888 39 H 0.116 0.884 40 H 0.069 0.931 41 H 0.107 0.893 42 H 0.085 0.915 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -1.675 -26.212 -2.262 26.363 hybrid contribution 0.442 1.097 -0.130 1.190 sum -1.233 -25.115 -2.392 25.259 Atomic orbital electron populations 1.70054 1.07476 1.27891 1.51468 1.25900 0.95841 1.03035 0.94633 0.85559 0.78411 0.78392 0.79052 1.19465 1.20244 1.19436 1.21663 0.93323 0.92858 1.50924 0.93144 1.18999 0.94123 0.92254 0.95530 1.21167 0.97645 0.93053 1.00129 1.21686 0.97961 0.91785 1.05291 1.21120 0.89255 0.84796 0.74553 1.90637 1.19089 1.85107 1.52036 1.48270 1.08633 1.04808 1.72776 1.22146 0.78785 1.01303 1.00126 1.22003 1.01088 0.95224 0.97799 1.20686 0.93689 0.94653 0.97818 1.22289 1.05529 0.89438 0.99933 1.23085 0.95409 1.00106 1.02563 1.23012 0.95127 1.00792 1.03100 1.21865 0.97372 0.99000 0.97290 1.21666 0.93399 0.86871 0.99685 0.92606 0.98065 0.97992 0.94201 0.94323 0.87706 0.87497 0.89257 0.88817 0.92437 0.88557 0.89931 0.88389 0.88207 0.88515 0.88761 0.88412 0.93094 0.89349 0.91549 0.90012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.74 13.29 21.45 0.28 -56.46 16 2 C 0.00 0.23 5.46 84.65 0.46 0.70 16 3 Si 0.96 45.58 29.54 68.60 2.03 47.61 16 4 H -0.27 -12.40 7.11 99.48 0.71 -11.70 16 5 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 6 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 7 C -0.55 -32.83 9.11 25.60 0.23 -32.59 16 8 H 0.05 2.98 7.74 -2.91 -0.02 2.96 16 9 C 0.03 1.51 4.97 29.85 0.15 1.66 16 10 C -0.08 -3.72 4.44 30.59 0.14 -3.59 16 11 C -0.13 -4.35 4.05 29.85 0.12 -4.23 16 12 C 0.51 17.43 7.70 87.66 0.67 18.10 16 13 O -0.59 -25.18 15.40 -3.03 -0.05 -25.22 16 14 N -0.61 -15.12 2.97 -818.13 -2.43 -17.55 16 15 C 0.10 1.68 6.37 86.51 0.55 2.24 16 16 C -0.12 -1.75 5.36 30.82 0.17 -1.59 16 17 C -0.05 -0.66 2.30 -10.77 -0.02 -0.68 16 18 C -0.15 -1.90 5.14 -10.79 -0.06 -1.95 16 19 C -0.17 -1.80 10.18 30.62 0.31 -1.49 16 20 C -0.18 -2.04 9.72 30.62 0.30 -1.74 16 21 C -0.12 -1.94 5.22 30.66 0.16 -1.78 16 22 C 0.11 2.27 6.43 86.35 0.55 2.83 16 23 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 24 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 25 H 0.00 0.10 8.14 -2.39 -0.02 0.08 16 26 H 0.04 1.89 8.10 -2.38 -0.02 1.87 16 27 H 0.04 1.84 8.10 -2.38 -0.02 1.82 16 28 H 0.10 3.20 7.70 -2.38 -0.02 3.18 16 29 H 0.11 3.22 7.93 -2.39 -0.02 3.20 16 30 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.09 1.62 5.93 -2.39 -0.01 1.61 16 32 H 0.06 0.98 8.14 -2.39 -0.02 0.97 16 33 H 0.10 1.04 8.14 -2.38 -0.02 1.02 16 34 H 0.08 0.96 7.90 -2.38 -0.02 0.94 16 35 H 0.10 1.33 8.11 -2.39 -0.02 1.31 16 36 H 0.10 0.91 8.05 -2.39 -0.02 0.90 16 37 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 39 H 0.10 1.01 7.61 -2.38 -0.02 0.99 16 40 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.09 1.19 7.25 -2.39 -0.02 1.18 16 42 H 0.07 1.78 7.01 -2.38 -0.02 1.77 16 43 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 Total: -1.00 -71.87 341.98 4.53 -67.34 By element: Atomic # 1 Polarization: 7.46 SS G_CDS: 0.95 Total: 8.41 kcal Atomic # 6 Polarization: -27.86 SS G_CDS: 3.74 Total: -24.13 kcal Atomic # 7 Polarization: -71.87 SS G_CDS: -2.14 Total: -74.01 kcal Atomic # 8 Polarization: -25.18 SS G_CDS: -0.05 Total: -25.22 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 2.03 Total: 47.61 kcal Total: -71.87 4.53 -67.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594363702.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.817 kcal (2) G-P(sol) polarization free energy of solvation -71.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds