Wall clock time and date at job start Mon Mar 30 2020 06:40:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 120.00075 * 2 1 4 4 H 1.48504 * 109.47096 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47449 * 299.99881 * 3 2 1 6 6 H 1.48499 * 109.47077 * 60.00151 * 3 2 1 7 7 C 1.37877 * 119.99871 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00133 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99857 * 359.97438 * 7 2 1 10 10 H 1.09003 * 110.67239 * 61.78633 * 9 7 2 11 11 C 1.54881 * 110.76095 * 298.54690 * 9 7 2 12 12 C 1.54267 * 104.20077 * 203.55776 * 11 9 7 13 13 C 1.53881 * 106.59629 * 23.60905 * 12 11 9 14 14 H 1.08998 * 110.03308 * 240.66800 * 13 12 11 15 15 N 1.46898 * 110.02935 * 119.28411 * 13 12 11 16 16 C 1.46901 * 110.99778 * 86.45895 * 15 13 12 17 17 H 1.08993 * 110.98004 * 37.70123 * 16 15 13 18 18 C 1.54995 * 111.10583 * 273.54014 * 16 15 13 19 19 O 1.43842 * 105.16969 * 205.92952 * 18 16 15 20 20 C 1.42628 * 109.67288 * 24.32141 * 19 18 16 21 21 C 1.53191 * 115.41211 * 128.14046 * 20 19 18 22 22 C 1.53888 * 87.01469 * 142.15585 * 21 20 19 23 23 C 1.53207 * 115.36657 * 228.24793 * 20 19 18 24 24 C 1.53858 * 108.26887 * 358.15400 * 20 19 18 25 25 C 1.54263 * 106.59670 * 0.02562 * 13 12 11 26 26 H 0.97008 * 119.99928 * 359.97438 * 1 2 3 27 27 H 1.09005 * 110.48703 * 84.87939 * 11 9 7 28 28 H 1.09004 * 110.60036 * 322.29443 * 11 9 7 29 29 H 1.08997 * 110.03142 * 264.32660 * 12 11 9 30 30 H 1.08999 * 110.07426 * 142.91605 * 12 11 9 31 31 H 1.00900 * 111.00499 * 322.49806 * 15 13 12 32 32 H 1.09002 * 110.30506 * 87.01292 * 18 16 15 33 33 H 1.08990 * 110.30740 * 324.85371 * 18 16 15 34 34 H 1.09002 * 113.64158 * 256.70902 * 21 20 19 35 35 H 1.08999 * 113.63828 * 27.60952 * 21 20 19 36 36 H 1.08998 * 113.59491 * 89.60965 * 22 21 20 37 37 H 1.08998 * 113.60036 * 220.46668 * 22 21 20 38 38 H 1.08994 * 113.64238 * 332.25916 * 23 20 19 39 39 H 1.08995 * 113.64562 * 103.16321 * 23 20 19 40 40 H 1.09004 * 110.91006 * 97.17536 * 24 20 19 41 41 H 1.09001 * 110.91288 * 220.79584 * 24 20 19 42 42 H 1.08995 * 110.48936 * 95.06614 * 25 13 12 43 43 H 1.09000 * 110.48701 * 217.70875 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0017 10 1 0.6406 -2.5919 -0.8967 11 6 0.3776 -2.6276 1.2743 12 6 0.1789 -4.1479 1.4450 13 6 1.3520 -4.8288 0.7183 14 1 0.9761 -5.4656 -0.0825 15 7 2.1376 -5.6270 1.6689 16 6 1.5758 -6.9766 1.8133 17 1 1.2078 -7.3505 0.8579 18 6 0.4616 -7.0051 2.8904 19 8 0.4399 -8.3597 3.3739 20 6 1.7107 -8.9686 3.1533 21 6 2.3446 -9.6300 4.3811 22 6 2.8431 -10.7322 3.4299 23 6 1.6700 -10.3559 2.5045 24 6 2.6145 -7.9518 2.4346 25 6 2.2228 -3.6985 0.1319 26 1 -0.4850 0.8401 0.0004 27 1 -0.5822 -2.1313 1.1301 28 1 0.8952 -2.2111 2.1384 29 1 -0.7662 -4.4536 0.9964 30 1 0.1920 -4.4105 2.5028 31 1 2.2017 -5.1644 2.5632 32 1 -0.4999 -6.7465 2.4469 33 1 0.7020 -6.3179 3.7015 34 1 3.1468 -9.0431 4.8286 35 1 1.6171 -9.9807 5.1131 36 1 3.8226 -10.5260 2.9984 37 1 2.7663 -11.7363 3.8471 38 1 0.7550 -10.9097 2.7140 39 1 1.9294 -10.3512 1.4459 40 1 3.2586 -7.4335 3.1450 41 1 3.2055 -8.4374 1.6580 42 1 3.0404 -3.4557 0.8105 43 1 2.6097 -3.9834 -0.8465 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595043621.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:02 Heat of formation + Delta-G solvation = -38.911053 kcal Electronic energy + Delta-G solvation = -20608.599307 eV Core-core repulsion = 17653.352890 eV Total energy + Delta-G solvation = -2955.246416 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.61851 -38.03208 -36.38635 -34.23858 -32.20765 -29.78257 -28.09378 -27.31261 -25.97692 -25.85603 -23.65995 -22.97859 -21.32294 -19.46520 -19.16406 -19.03724 -16.79836 -16.33901 -16.02162 -15.41241 -15.01764 -14.73709 -14.42549 -14.25403 -13.62723 -13.15904 -13.01160 -12.59036 -12.42353 -12.38833 -12.05256 -11.97886 -11.54312 -11.34997 -11.12441 -11.02675 -10.88391 -10.77694 -10.63216 -10.53894 -10.40030 -10.06557 -9.81478 -9.53642 -9.46680 -9.10436 -8.75235 -8.35623 -8.07247 -5.98310 -4.00863 3.30863 3.39113 3.43236 3.66015 4.22454 4.36536 4.45215 4.52163 4.57530 4.70137 4.81237 4.86592 5.07067 5.25930 5.33498 5.48862 5.53230 5.55442 5.61542 5.65503 5.67488 5.68574 5.76750 5.80574 5.89027 5.96114 6.06760 6.12730 6.26103 6.48948 6.64709 6.72096 6.81527 7.01430 7.04713 7.13755 7.34632 7.50920 7.63629 7.74125 7.93310 8.06423 8.48946 9.02144 9.63260 11.10865 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.050603 B = 0.003530 C = 0.003447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 553.191690 B = 7930.239315 C = 8120.474662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.061 3.939 3 Si 0.888 3.112 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.510 4.510 8 H 0.056 0.944 9 C 0.048 3.952 10 H 0.027 0.973 11 C -0.098 4.098 12 C -0.156 4.156 13 C 0.082 3.918 14 H 0.067 0.933 15 N -0.668 5.668 16 C 0.059 3.941 17 H 0.093 0.907 18 C 0.021 3.979 19 O -0.367 6.367 20 C 0.082 3.918 21 C -0.142 4.142 22 C -0.139 4.139 23 C -0.140 4.140 24 C -0.119 4.119 25 C -0.102 4.102 26 H 0.258 0.742 27 H 0.066 0.934 28 H 0.045 0.955 29 H 0.050 0.950 30 H 0.045 0.955 31 H 0.343 0.657 32 H 0.084 0.916 33 H 0.060 0.940 34 H 0.071 0.929 35 H 0.086 0.914 36 H 0.083 0.917 37 H 0.072 0.928 38 H 0.086 0.914 39 H 0.072 0.928 40 H 0.083 0.917 41 H 0.084 0.916 42 H 0.062 0.938 43 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.076 -18.401 6.279 19.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.140 4.140 3 Si 0.717 3.283 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.212 1.212 7 C -0.548 4.548 8 H 0.074 0.926 9 C 0.029 3.971 10 H 0.046 0.954 11 C -0.136 4.136 12 C -0.195 4.195 13 C -0.027 4.027 14 H 0.085 0.915 15 N -0.298 5.298 16 C -0.052 4.052 17 H 0.111 0.889 18 C -0.058 4.058 19 O -0.285 6.285 20 C 0.042 3.958 21 C -0.180 4.180 22 C -0.177 4.177 23 C -0.178 4.178 24 C -0.158 4.158 25 C -0.140 4.140 26 H 0.068 0.932 27 H 0.085 0.915 28 H 0.064 0.936 29 H 0.068 0.932 30 H 0.064 0.936 31 H 0.163 0.837 32 H 0.103 0.897 33 H 0.078 0.922 34 H 0.089 0.911 35 H 0.104 0.896 36 H 0.101 0.899 37 H 0.090 0.910 38 H 0.105 0.895 39 H 0.090 0.910 40 H 0.102 0.898 41 H 0.103 0.897 42 H 0.081 0.919 43 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 3.226 -18.570 5.901 19.750 hybrid contribution -0.387 1.279 0.534 1.439 sum 2.839 -17.291 6.435 18.666 Atomic orbital electron populations 1.69973 1.05872 1.26204 1.50916 1.24985 0.94831 0.99009 0.95212 0.86594 0.80229 0.84040 0.77481 1.19783 1.21128 1.21152 1.21174 0.92868 0.90494 1.50295 0.92595 1.19591 0.92245 0.91608 0.93663 0.95443 1.22247 1.01563 0.90010 0.99798 1.23047 0.97954 1.00424 0.98119 1.22435 0.92554 0.94330 0.93414 0.91511 1.60692 1.52397 1.01641 1.15095 1.23327 0.92304 0.91294 0.98309 0.88932 1.24336 1.00997 0.83929 0.96517 1.88348 1.32202 1.25688 1.82302 1.23162 0.84240 0.92532 0.95913 1.23320 1.00083 0.97552 0.97028 1.22724 0.98268 0.98876 0.97814 1.23323 0.99072 0.95900 0.99470 1.22798 0.97469 0.95479 1.00010 1.22448 0.98514 0.94474 0.98614 0.93236 0.91511 0.93602 0.93158 0.93648 0.83735 0.89737 0.92159 0.91061 0.89562 0.89887 0.90973 0.89549 0.90977 0.89849 0.89689 0.91948 0.93533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.53 12.02 55.43 0.67 -24.86 16 2 C 0.06 1.69 5.33 -17.82 -0.10 1.59 16 3 Si 0.89 21.30 29.54 -169.99 -5.02 16.28 16 4 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 7 C -0.51 -13.94 8.56 -34.44 -0.29 -14.23 16 8 H 0.06 1.52 7.78 -52.49 -0.41 1.11 16 9 C 0.05 1.17 2.81 -89.77 -0.25 0.92 16 10 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 11 C -0.10 -2.23 5.57 -25.08 -0.14 -2.37 16 12 C -0.16 -2.81 5.87 -25.61 -0.15 -2.96 16 13 C 0.08 1.40 3.23 -66.59 -0.21 1.18 16 14 H 0.07 1.11 7.54 -51.93 -0.39 0.72 16 15 N -0.67 -9.75 6.11 -96.13 -0.59 -10.33 16 16 C 0.06 0.75 3.37 -65.37 -0.22 0.53 16 17 H 0.09 1.20 7.59 -51.93 -0.39 0.81 16 18 C 0.02 0.27 6.00 38.21 0.23 0.50 16 19 O -0.37 -4.98 11.13 -35.23 -0.39 -5.38 16 20 C 0.08 0.90 1.65 -89.97 -0.15 0.75 16 21 C -0.14 -1.35 7.59 -26.17 -0.20 -1.55 16 22 C -0.14 -1.12 7.90 -25.71 -0.20 -1.32 16 23 C -0.14 -1.33 7.52 -26.06 -0.20 -1.52 16 24 C -0.12 -1.31 5.83 -24.99 -0.15 -1.46 16 25 C -0.10 -2.09 5.96 -25.06 -0.15 -2.24 16 26 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 27 H 0.07 1.68 7.37 -51.93 -0.38 1.30 16 28 H 0.05 1.09 8.05 -51.93 -0.42 0.67 16 29 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.04 0.74 6.50 -51.93 -0.34 0.40 16 31 H 0.34 4.96 7.76 -39.29 -0.30 4.66 16 32 H 0.08 1.11 8.04 -51.93 -0.42 0.69 16 33 H 0.06 0.78 7.63 -51.93 -0.40 0.38 16 34 H 0.07 0.64 8.00 -51.93 -0.42 0.22 16 35 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 39 H 0.07 0.64 8.00 -51.93 -0.42 0.23 16 40 H 0.08 0.91 8.00 -51.93 -0.42 0.50 16 41 H 0.08 0.87 7.85 -51.93 -0.41 0.46 16 42 H 0.06 1.31 7.96 -51.93 -0.41 0.89 16 43 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 LS Contribution 330.69 15.07 4.98 4.98 Total: -1.00 -28.12 330.69 -10.14 -38.26 By element: Atomic # 1 Polarization: 10.85 SS G_CDS: -7.61 Total: 3.23 kcal Atomic # 6 Polarization: -20.01 SS G_CDS: -2.18 Total: -22.19 kcal Atomic # 7 Polarization: -35.27 SS G_CDS: 0.08 Total: -35.19 kcal Atomic # 8 Polarization: -4.98 SS G_CDS: -0.39 Total: -5.38 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -28.12 -10.14 -38.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595043621.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.648 kcal (2) G-P(sol) polarization free energy of solvation -28.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds