Wall clock time and date at job start Mon Mar 30 2020 06:40:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 120.00075 * 2 1 4 4 H 1.48504 * 109.47096 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47449 * 299.99881 * 3 2 1 6 6 H 1.48499 * 109.47077 * 60.00151 * 3 2 1 7 7 C 1.37877 * 119.99871 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00133 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99857 * 359.97438 * 7 2 1 10 10 H 1.09003 * 110.67239 * 61.78633 * 9 7 2 11 11 C 1.54881 * 110.76095 * 298.54690 * 9 7 2 12 12 C 1.54267 * 104.20077 * 203.55776 * 11 9 7 13 13 C 1.53881 * 106.59629 * 23.60905 * 12 11 9 14 14 H 1.08998 * 110.03308 * 240.66800 * 13 12 11 15 15 N 1.46898 * 110.02935 * 119.28411 * 13 12 11 16 16 C 1.46901 * 110.99778 * 86.45895 * 15 13 12 17 17 H 1.08993 * 110.98004 * 37.70123 * 16 15 13 18 18 C 1.54995 * 111.10583 * 273.54014 * 16 15 13 19 19 O 1.43842 * 105.16969 * 205.92952 * 18 16 15 20 20 C 1.42628 * 109.67288 * 24.32141 * 19 18 16 21 21 C 1.53191 * 115.41211 * 128.14046 * 20 19 18 22 22 C 1.53888 * 87.01469 * 142.15585 * 21 20 19 23 23 C 1.53207 * 115.36657 * 228.24793 * 20 19 18 24 24 C 1.53858 * 108.26887 * 358.15400 * 20 19 18 25 25 C 1.54263 * 106.59670 * 0.02562 * 13 12 11 26 26 H 0.97008 * 119.99928 * 359.97438 * 1 2 3 27 27 H 1.09005 * 110.48703 * 84.87939 * 11 9 7 28 28 H 1.09004 * 110.60036 * 322.29443 * 11 9 7 29 29 H 1.08997 * 110.03142 * 264.32660 * 12 11 9 30 30 H 1.08999 * 110.07426 * 142.91605 * 12 11 9 31 31 H 1.00900 * 111.00499 * 322.49806 * 15 13 12 32 32 H 1.09002 * 110.30506 * 87.01292 * 18 16 15 33 33 H 1.08990 * 110.30740 * 324.85371 * 18 16 15 34 34 H 1.09002 * 113.64158 * 256.70902 * 21 20 19 35 35 H 1.08999 * 113.63828 * 27.60952 * 21 20 19 36 36 H 1.08998 * 113.59491 * 89.60965 * 22 21 20 37 37 H 1.08998 * 113.60036 * 220.46668 * 22 21 20 38 38 H 1.08994 * 113.64238 * 332.25916 * 23 20 19 39 39 H 1.08995 * 113.64562 * 103.16321 * 23 20 19 40 40 H 1.09004 * 110.91006 * 97.17536 * 24 20 19 41 41 H 1.09001 * 110.91288 * 220.79584 * 24 20 19 42 42 H 1.08995 * 110.48936 * 95.06614 * 25 13 12 43 43 H 1.09000 * 110.48701 * 217.70875 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0017 10 1 0.6406 -2.5919 -0.8967 11 6 0.3776 -2.6276 1.2743 12 6 0.1789 -4.1479 1.4450 13 6 1.3520 -4.8288 0.7183 14 1 0.9761 -5.4656 -0.0825 15 7 2.1376 -5.6270 1.6689 16 6 1.5758 -6.9766 1.8133 17 1 1.2078 -7.3505 0.8579 18 6 0.4616 -7.0051 2.8904 19 8 0.4399 -8.3597 3.3739 20 6 1.7107 -8.9686 3.1533 21 6 2.3446 -9.6300 4.3811 22 6 2.8431 -10.7322 3.4299 23 6 1.6700 -10.3559 2.5045 24 6 2.6145 -7.9518 2.4346 25 6 2.2228 -3.6985 0.1319 26 1 -0.4850 0.8401 0.0004 27 1 -0.5822 -2.1313 1.1301 28 1 0.8952 -2.2111 2.1384 29 1 -0.7662 -4.4536 0.9964 30 1 0.1920 -4.4105 2.5028 31 1 2.2017 -5.1644 2.5632 32 1 -0.4999 -6.7465 2.4469 33 1 0.7020 -6.3179 3.7015 34 1 3.1468 -9.0431 4.8286 35 1 1.6171 -9.9807 5.1131 36 1 3.8226 -10.5260 2.9984 37 1 2.7663 -11.7363 3.8471 38 1 0.7550 -10.9097 2.7140 39 1 1.9294 -10.3512 1.4459 40 1 3.2586 -7.4335 3.1450 41 1 3.2055 -8.4374 1.6580 42 1 3.0404 -3.4557 0.8105 43 1 2.6097 -3.9834 -0.8465 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595043621.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:01 Heat of formation + Delta-G solvation = -55.134442 kcal Electronic energy + Delta-G solvation = -20609.302806 eV Core-core repulsion = 17653.352890 eV Total energy + Delta-G solvation = -2955.949915 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.50763 -39.45579 -37.39092 -35.67341 -34.04482 -31.05759 -29.80116 -28.42163 -27.37121 -26.68267 -25.49045 -23.77377 -22.36153 -21.08363 -20.88981 -19.84329 -18.44192 -17.59426 -17.14097 -16.58092 -16.44225 -15.98157 -15.82956 -15.54052 -14.68165 -14.51498 -14.30657 -14.10777 -13.68278 -13.51208 -13.25347 -13.01569 -12.99983 -12.82820 -12.73644 -12.31511 -12.22646 -11.97552 -11.87410 -11.74829 -11.59779 -11.50637 -11.35678 -11.22994 -10.89246 -10.77785 -10.45540 -10.36544 -9.31293 -8.10162 -6.19829 1.39995 1.42178 1.53494 2.44204 2.70976 3.20170 3.26053 3.55597 3.61585 3.74800 3.86785 3.91831 3.95692 4.08141 4.13422 4.15383 4.28261 4.47082 4.66347 4.69604 4.75472 4.82410 4.84346 4.85726 4.98207 4.98994 5.05237 5.07526 5.08665 5.10847 5.18095 5.26571 5.30846 5.42235 5.44362 5.46355 5.67423 5.93822 6.02400 6.11262 6.21375 6.39093 6.45909 6.91243 7.47684 8.98041 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.050603 B = 0.003530 C = 0.003447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 553.191690 B = 7930.239315 C = 8120.474662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.010 3.990 3 Si 0.952 3.048 4 H -0.266 1.266 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.529 4.529 8 H 0.052 0.948 9 C 0.037 3.963 10 H -0.002 1.002 11 C -0.090 4.090 12 C -0.143 4.143 13 C 0.096 3.904 14 H 0.078 0.922 15 N -0.664 5.664 16 C 0.061 3.939 17 H 0.093 0.907 18 C 0.022 3.978 19 O -0.386 6.386 20 C 0.068 3.932 21 C -0.144 4.144 22 C -0.128 4.128 23 C -0.141 4.141 24 C -0.112 4.112 25 C -0.093 4.093 26 H 0.259 0.741 27 H 0.035 0.965 28 H 0.030 0.970 29 H 0.057 0.943 30 H 0.065 0.935 31 H 0.346 0.654 32 H 0.080 0.920 33 H 0.060 0.940 34 H 0.076 0.924 35 H 0.081 0.919 36 H 0.094 0.906 37 H 0.084 0.916 38 H 0.082 0.918 39 H 0.078 0.922 40 H 0.085 0.915 41 H 0.096 0.904 42 H 0.057 0.943 43 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.318 -19.850 6.798 21.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.188 4.188 3 Si 0.778 3.222 4 H -0.191 1.191 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.567 4.567 8 H 0.070 0.930 9 C 0.018 3.982 10 H 0.016 0.984 11 C -0.129 4.129 12 C -0.182 4.182 13 C -0.014 4.014 14 H 0.096 0.904 15 N -0.294 5.294 16 C -0.050 4.050 17 H 0.111 0.889 18 C -0.056 4.056 19 O -0.305 6.305 20 C 0.029 3.971 21 C -0.181 4.181 22 C -0.165 4.165 23 C -0.179 4.179 24 C -0.150 4.150 25 C -0.131 4.131 26 H 0.067 0.933 27 H 0.054 0.946 28 H 0.049 0.951 29 H 0.075 0.925 30 H 0.084 0.916 31 H 0.166 0.834 32 H 0.099 0.901 33 H 0.078 0.922 34 H 0.095 0.905 35 H 0.100 0.900 36 H 0.112 0.888 37 H 0.103 0.897 38 H 0.100 0.900 39 H 0.096 0.904 40 H 0.103 0.897 41 H 0.115 0.885 42 H 0.075 0.925 43 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 4.481 -20.039 6.426 21.516 hybrid contribution -0.786 1.716 0.370 1.923 sum 3.695 -18.324 6.796 19.890 Atomic orbital electron populations 1.70101 1.07191 1.26946 1.51706 1.25760 0.95662 1.02384 0.94995 0.85596 0.79211 0.79917 0.77488 1.19054 1.20766 1.20752 1.21547 0.92956 0.92094 1.50091 0.92978 1.19588 0.93035 0.92541 0.93056 0.98423 1.22020 0.99249 0.93297 0.98310 1.22930 0.98875 0.96652 0.99765 1.22160 0.91412 0.93675 0.94103 0.90388 1.60604 1.51847 1.02148 1.14828 1.23332 0.92929 0.90300 0.98461 0.88878 1.24277 1.00842 0.84016 0.96485 1.88334 1.33747 1.25833 1.82569 1.23454 0.83421 0.93019 0.97215 1.23341 1.00063 0.98026 0.96708 1.22717 0.98103 0.99046 0.96664 1.23346 0.99641 0.94805 1.00091 1.22761 0.97036 0.94970 1.00196 1.22271 0.97794 0.93994 0.99045 0.93250 0.94633 0.95111 0.92463 0.91605 0.83450 0.90134 0.92219 0.90550 0.89992 0.88794 0.89730 0.89965 0.90374 0.89686 0.88531 0.92471 0.93213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.94 12.02 21.45 0.26 -53.68 16 2 C 0.01 0.58 5.33 84.65 0.45 1.03 16 3 Si 0.95 44.07 29.54 68.60 2.03 46.09 16 4 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 5 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 6 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 7 C -0.53 -29.39 8.56 25.60 0.22 -29.17 16 8 H 0.05 2.86 7.78 -2.91 -0.02 2.84 16 9 C 0.04 1.83 2.81 -10.24 -0.03 1.80 16 10 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 11 C -0.09 -4.20 5.57 31.67 0.18 -4.03 16 12 C -0.14 -5.02 5.87 31.32 0.18 -4.84 16 13 C 0.10 3.14 3.23 45.64 0.15 3.29 16 14 H 0.08 2.43 7.54 -2.39 -0.02 2.41 16 15 N -0.66 -17.96 6.11 -458.05 -2.80 -20.76 16 16 C 0.06 1.41 3.37 46.44 0.16 1.56 16 17 H 0.09 2.19 7.59 -2.39 -0.02 2.17 16 18 C 0.02 0.54 6.00 72.66 0.44 0.97 16 19 O -0.39 -9.90 11.13 -148.98 -1.66 -11.55 16 20 C 0.07 1.37 1.65 -10.37 -0.02 1.35 16 21 C -0.14 -2.41 7.59 30.96 0.23 -2.18 16 22 C -0.13 -1.69 7.90 31.26 0.25 -1.44 16 23 C -0.14 -2.35 7.52 31.03 0.23 -2.11 16 24 C -0.11 -2.17 5.83 31.72 0.19 -1.99 16 25 C -0.09 -3.74 5.96 31.68 0.19 -3.55 16 26 H 0.26 14.43 8.31 -92.70 -0.77 13.66 16 27 H 0.03 1.84 7.37 -2.38 -0.02 1.82 16 28 H 0.03 1.48 8.05 -2.38 -0.02 1.46 16 29 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 30 H 0.07 2.04 6.50 -2.39 -0.02 2.03 16 31 H 0.35 9.27 7.76 -89.69 -0.70 8.57 16 32 H 0.08 1.99 8.04 -2.39 -0.02 1.97 16 33 H 0.06 1.44 7.63 -2.39 -0.02 1.42 16 34 H 0.08 1.19 8.00 -2.39 -0.02 1.17 16 35 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 39 H 0.08 1.19 8.00 -2.39 -0.02 1.17 16 40 H 0.08 1.64 8.00 -2.38 -0.02 1.62 16 41 H 0.10 1.67 7.85 -2.39 -0.02 1.65 16 42 H 0.06 2.35 7.96 -2.39 -0.02 2.33 16 43 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 Total: -1.00 -60.76 330.69 0.91 -59.85 By element: Atomic # 1 Polarization: 19.08 SS G_CDS: 0.27 Total: 19.36 kcal Atomic # 6 Polarization: -42.11 SS G_CDS: 2.81 Total: -39.30 kcal Atomic # 7 Polarization: -71.90 SS G_CDS: -2.54 Total: -74.45 kcal Atomic # 8 Polarization: -9.90 SS G_CDS: -1.66 Total: -11.55 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.09 kcal Total: -60.76 0.91 -59.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595043621.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.712 kcal (2) G-P(sol) polarization free energy of solvation -60.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds