Wall clock time and date at job start Mon Mar 30 2020 06:40:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86804 * 120.00075 * 2 1 4 4 H 1.48494 * 109.47257 * 240.00257 * 3 2 1 5 5 H 1.48505 * 109.46858 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47387 * 119.99977 * 3 2 1 7 7 C 1.37880 * 120.00491 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00459 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99382 * 0.02562 * 7 2 1 10 10 H 1.08995 * 110.43608 * 57.46222 * 9 7 2 11 11 C 1.54265 * 110.48676 * 294.77057 * 9 7 2 12 12 C 1.54081 * 106.62219 * 217.60540 * 11 9 7 13 13 C 1.54265 * 106.49730 * 0.17316 * 12 11 9 14 14 H 1.08996 * 110.48647 * 264.71188 * 13 12 11 15 15 N 1.46900 * 110.48976 * 142.19457 * 13 12 11 16 16 C 1.46897 * 110.99859 * 88.24608 * 15 13 12 17 17 H 1.09007 * 110.93200 * 328.65246 * 16 15 13 18 18 C 1.55291 * 110.99845 * 92.36979 * 16 15 13 19 19 O 1.44545 * 103.70124 * 154.64681 * 18 16 15 20 20 C 1.43067 * 106.80252 * 320.73877 * 19 18 16 21 21 C 1.53146 * 115.22738 * 155.94523 * 20 19 18 22 22 C 1.53897 * 86.89864 * 91.81359 * 21 20 19 23 23 C 1.53157 * 115.20035 * 255.91808 * 20 19 18 24 24 C 1.53518 * 108.05889 * 25.90520 * 20 19 18 25 25 C 1.54892 * 104.30858 * 23.45458 * 13 12 11 26 26 H 0.96993 * 120.00046 * 359.97438 * 1 2 3 27 27 H 1.09001 * 110.03000 * 336.99842 * 11 9 7 28 28 H 1.09003 * 110.02902 * 98.42980 * 11 9 7 29 29 H 1.09007 * 110.15866 * 240.88115 * 12 11 9 30 30 H 1.09000 * 110.00810 * 119.38200 * 12 11 9 31 31 H 1.00899 * 110.99745 * 324.29611 * 15 13 12 32 32 H 1.08995 * 110.48715 * 36.11796 * 18 16 15 33 33 H 1.08998 * 110.75249 * 273.30319 * 18 16 15 34 34 H 1.09000 * 113.64150 * 206.31387 * 21 20 19 35 35 H 1.09000 * 113.64419 * 337.30987 * 21 20 19 36 36 H 1.09008 * 113.59504 * 270.38574 * 22 21 20 37 37 H 1.08992 * 113.67419 * 139.55338 * 22 21 20 38 38 H 1.09000 * 113.64203 * 22.66571 * 23 20 19 39 39 H 1.09000 * 113.63891 * 153.66204 * 23 20 19 40 40 H 1.09002 * 110.54399 * 116.88416 * 24 20 19 41 41 H 1.09003 * 110.54326 * 239.53389 * 24 20 19 42 42 H 1.08994 * 110.76016 * 80.44023 * 25 13 12 43 43 H 1.09005 * 110.75428 * 203.81166 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1030 1.6965 1.2125 7 6 2.0047 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 1 0.5854 -2.5534 -0.8630 11 6 0.4563 -2.6648 1.3100 12 6 0.5383 -4.1559 1.6897 13 6 1.3842 -4.8405 0.5963 14 1 0.7401 -5.2757 -0.1677 15 7 2.2496 -5.8710 1.1855 16 6 1.5562 -7.1642 1.2543 17 1 0.4846 -7.0245 1.3967 18 6 1.8391 -8.0155 -0.0133 19 8 1.6506 -9.3755 0.4385 20 6 2.2022 -9.4537 1.7563 21 6 1.6330 -10.5700 2.6369 22 6 2.7797 -11.4531 2.1137 23 6 3.5612 -10.1531 1.8539 24 6 2.1515 -8.0508 2.3775 25 6 2.2367 -3.6940 -0.0021 26 1 -0.4850 0.8400 0.0004 27 1 0.9003 -2.0531 2.0954 28 1 -0.5837 -2.3775 1.1552 29 1 -0.4603 -4.5920 1.7170 30 1 1.0217 -4.2675 2.6603 31 1 2.5794 -5.5886 2.0963 32 1 2.8631 -7.8632 -0.3544 33 1 1.1320 -7.7735 -0.8067 34 1 1.6957 -10.3594 3.7045 35 1 0.6442 -10.9091 2.3281 36 1 2.5291 -12.0006 1.2050 37 1 3.2284 -12.0864 2.8789 38 1 4.1186 -10.1579 0.9172 39 1 4.1609 -9.8263 2.7034 40 1 1.5038 -8.0438 3.2541 41 1 3.1537 -7.7127 2.6410 42 1 3.0993 -3.4836 0.6301 43 1 2.5505 -3.9356 -1.0177 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595043622.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:06 Heat of formation + Delta-G solvation = -38.274203 kcal Electronic energy + Delta-G solvation = -20473.049604 eV Core-core repulsion = 17517.830803 eV Total energy + Delta-G solvation = -2955.218801 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.58230 -37.91475 -36.24982 -34.25448 -32.23822 -29.96841 -28.04986 -27.39355 -26.03197 -25.88342 -23.58305 -22.81026 -21.02049 -19.60169 -19.38123 -18.91854 -16.54963 -16.18310 -16.05254 -15.59186 -15.04832 -14.60160 -14.44763 -14.16911 -13.83738 -13.35173 -13.16411 -12.58758 -12.47537 -12.39118 -12.24268 -11.60063 -11.49642 -11.33015 -11.10601 -11.00924 -10.82281 -10.73012 -10.56285 -10.51923 -10.30926 -10.05505 -9.86102 -9.59583 -9.54655 -9.09573 -8.72226 -8.35478 -8.06340 -5.98192 -4.00531 3.33563 3.38190 3.40887 3.61881 4.29767 4.33665 4.39475 4.47690 4.61157 4.65318 4.87371 4.97376 5.20880 5.31541 5.39559 5.45944 5.52771 5.55629 5.60421 5.62949 5.67624 5.72667 5.84186 5.85633 5.89111 5.96404 6.06341 6.09363 6.25305 6.46935 6.64274 6.72632 6.83043 6.91515 7.04286 7.15851 7.35132 7.48667 7.64608 7.72323 7.92612 8.05572 8.50264 9.02854 9.63344 11.11703 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.054344 B = 0.003375 C = 0.003337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 515.110760 B = 8295.019693 C = 8388.832720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.061 3.939 3 Si 0.889 3.111 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.512 4.512 8 H 0.055 0.945 9 C 0.047 3.953 10 H 0.029 0.971 11 C -0.094 4.094 12 C -0.152 4.152 13 C 0.079 3.921 14 H 0.072 0.928 15 N -0.671 5.671 16 C 0.054 3.946 17 H 0.060 0.940 18 C 0.057 3.943 19 O -0.356 6.356 20 C 0.087 3.913 21 C -0.134 4.134 22 C -0.136 4.136 23 C -0.153 4.153 24 C -0.144 4.144 25 C -0.099 4.099 26 H 0.259 0.741 27 H 0.050 0.950 28 H 0.052 0.948 29 H 0.043 0.957 30 H 0.047 0.953 31 H 0.342 0.658 32 H 0.072 0.928 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.075 0.925 36 H 0.082 0.918 37 H 0.066 0.934 38 H 0.073 0.927 39 H 0.088 0.912 40 H 0.076 0.924 41 H 0.085 0.915 42 H 0.058 0.942 43 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.469 -19.020 5.574 20.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.140 4.140 3 Si 0.717 3.283 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.550 4.550 8 H 0.073 0.927 9 C 0.028 3.972 10 H 0.047 0.953 11 C -0.133 4.133 12 C -0.191 4.191 13 C -0.030 4.030 14 H 0.090 0.910 15 N -0.303 5.303 16 C -0.057 4.057 17 H 0.078 0.922 18 C -0.020 4.020 19 O -0.274 6.274 20 C 0.047 3.953 21 C -0.172 4.172 22 C -0.174 4.174 23 C -0.191 4.191 24 C -0.182 4.182 25 C -0.137 4.137 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.062 0.938 30 H 0.066 0.934 31 H 0.162 0.838 32 H 0.090 0.910 33 H 0.108 0.892 34 H 0.109 0.891 35 H 0.093 0.907 36 H 0.100 0.900 37 H 0.085 0.915 38 H 0.092 0.908 39 H 0.106 0.894 40 H 0.095 0.905 41 H 0.104 0.896 42 H 0.077 0.923 43 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 3.525 -19.226 4.861 20.142 hybrid contribution -0.207 1.367 0.892 1.645 sum 3.318 -17.859 5.753 19.053 Atomic orbital electron populations 1.69959 1.05887 1.26484 1.50668 1.24993 0.94824 0.99001 0.95219 0.86716 0.79629 0.83383 0.78594 1.20297 1.21415 1.20340 1.21135 0.92785 0.90519 1.50583 0.92688 1.19449 0.92557 0.91747 0.93417 0.95253 1.22077 1.00868 0.90366 0.99998 1.22977 0.98604 0.99975 0.97582 1.22647 0.93307 0.91278 0.95785 0.91016 1.60667 1.38975 1.01663 1.28973 1.23109 0.97163 0.90722 0.94692 0.92156 1.23690 1.02051 0.79815 0.96433 1.88734 1.79996 1.29433 1.29269 1.22555 0.94422 0.93902 0.84441 1.23105 0.99431 0.95697 0.98947 1.22798 0.97004 0.96296 1.01273 1.23392 0.96532 0.96572 1.02554 1.23006 1.02518 0.94195 0.98458 1.22534 0.98460 0.94078 0.98644 0.93098 0.93095 0.92959 0.93812 0.93422 0.83847 0.91023 0.89182 0.89094 0.90671 0.89975 0.91506 0.90823 0.89369 0.90543 0.89623 0.92279 0.93297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.76 12.63 55.43 0.70 -25.06 16 2 C 0.06 1.70 5.35 -17.82 -0.10 1.60 16 3 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.51 -14.04 8.36 -34.44 -0.29 -14.32 16 8 H 0.05 1.49 7.77 -52.49 -0.41 1.08 16 9 C 0.05 1.16 2.73 -90.11 -0.25 0.92 16 10 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 11 C -0.09 -2.17 5.60 -25.51 -0.14 -2.31 16 12 C -0.15 -2.77 6.48 -25.50 -0.17 -2.93 16 13 C 0.08 1.37 3.01 -66.05 -0.20 1.17 16 14 H 0.07 1.24 7.89 -51.93 -0.41 0.83 16 15 N -0.67 -9.70 6.22 -95.66 -0.59 -10.29 16 16 C 0.05 0.69 3.30 -65.46 -0.22 0.48 16 17 H 0.06 0.83 7.87 -51.92 -0.41 0.42 16 18 C 0.06 0.74 7.43 38.37 0.29 1.03 16 19 O -0.36 -4.74 11.27 -35.23 -0.40 -5.14 16 20 C 0.09 0.95 1.38 -90.20 -0.12 0.83 16 21 C -0.13 -1.23 7.47 -26.19 -0.20 -1.43 16 22 C -0.14 -1.18 8.08 -25.80 -0.21 -1.39 16 23 C -0.15 -1.45 7.47 -26.19 -0.20 -1.65 16 24 C -0.14 -1.54 5.97 -25.42 -0.15 -1.70 16 25 C -0.10 -2.03 5.97 -24.73 -0.15 -2.17 16 26 H 0.26 7.18 8.31 -40.82 -0.34 6.85 16 27 H 0.05 1.25 7.83 -51.93 -0.41 0.84 16 28 H 0.05 1.29 8.06 -51.93 -0.42 0.87 16 29 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.05 0.80 7.55 -51.93 -0.39 0.41 16 31 H 0.34 4.72 7.71 -39.29 -0.30 4.42 16 32 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.09 0.70 8.11 -51.93 -0.42 0.27 16 35 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.08 0.75 8.14 -51.92 -0.42 0.33 16 37 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 39 H 0.09 0.73 8.08 -51.93 -0.42 0.31 16 40 H 0.08 0.75 7.94 -51.93 -0.41 0.34 16 41 H 0.09 0.88 7.68 -51.93 -0.40 0.48 16 42 H 0.06 1.23 8.05 -51.93 -0.42 0.81 16 43 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 335.70 15.07 5.06 5.06 Total: -1.00 -28.31 335.70 -10.10 -38.41 By element: Atomic # 1 Polarization: 10.31 SS G_CDS: -7.76 Total: 2.56 kcal Atomic # 6 Polarization: -19.79 SS G_CDS: -2.09 Total: -21.89 kcal Atomic # 7 Polarization: -35.46 SS G_CDS: 0.11 Total: -35.35 kcal Atomic # 8 Polarization: -4.74 SS G_CDS: -0.40 Total: -5.14 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -28.31 -10.10 -38.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595043622.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.140 kcal (2) G-P(sol) polarization free energy of solvation -28.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds