Wall clock time and date at job start Mon Mar 30 2020 06:40:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86804 * 120.00075 * 2 1 4 4 H 1.48494 * 109.47257 * 240.00257 * 3 2 1 5 5 H 1.48505 * 109.46858 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47387 * 119.99977 * 3 2 1 7 7 C 1.37880 * 120.00491 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00459 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99382 * 0.02562 * 7 2 1 10 10 H 1.08995 * 110.43608 * 57.46222 * 9 7 2 11 11 C 1.54265 * 110.48676 * 294.77057 * 9 7 2 12 12 C 1.54081 * 106.62219 * 217.60540 * 11 9 7 13 13 C 1.54265 * 106.49730 * 0.17316 * 12 11 9 14 14 H 1.08996 * 110.48647 * 264.71188 * 13 12 11 15 15 N 1.46900 * 110.48976 * 142.19457 * 13 12 11 16 16 C 1.46897 * 110.99859 * 88.24608 * 15 13 12 17 17 H 1.09007 * 110.93200 * 328.65246 * 16 15 13 18 18 C 1.55291 * 110.99845 * 92.36979 * 16 15 13 19 19 O 1.44545 * 103.70124 * 154.64681 * 18 16 15 20 20 C 1.43067 * 106.80252 * 320.73877 * 19 18 16 21 21 C 1.53146 * 115.22738 * 155.94523 * 20 19 18 22 22 C 1.53897 * 86.89864 * 91.81359 * 21 20 19 23 23 C 1.53157 * 115.20035 * 255.91808 * 20 19 18 24 24 C 1.53518 * 108.05889 * 25.90520 * 20 19 18 25 25 C 1.54892 * 104.30858 * 23.45458 * 13 12 11 26 26 H 0.96993 * 120.00046 * 359.97438 * 1 2 3 27 27 H 1.09001 * 110.03000 * 336.99842 * 11 9 7 28 28 H 1.09003 * 110.02902 * 98.42980 * 11 9 7 29 29 H 1.09007 * 110.15866 * 240.88115 * 12 11 9 30 30 H 1.09000 * 110.00810 * 119.38200 * 12 11 9 31 31 H 1.00899 * 110.99745 * 324.29611 * 15 13 12 32 32 H 1.08995 * 110.48715 * 36.11796 * 18 16 15 33 33 H 1.08998 * 110.75249 * 273.30319 * 18 16 15 34 34 H 1.09000 * 113.64150 * 206.31387 * 21 20 19 35 35 H 1.09000 * 113.64419 * 337.30987 * 21 20 19 36 36 H 1.09008 * 113.59504 * 270.38574 * 22 21 20 37 37 H 1.08992 * 113.67419 * 139.55338 * 22 21 20 38 38 H 1.09000 * 113.64203 * 22.66571 * 23 20 19 39 39 H 1.09000 * 113.63891 * 153.66204 * 23 20 19 40 40 H 1.09002 * 110.54399 * 116.88416 * 24 20 19 41 41 H 1.09003 * 110.54326 * 239.53389 * 24 20 19 42 42 H 1.08994 * 110.76016 * 80.44023 * 25 13 12 43 43 H 1.09005 * 110.75428 * 203.81166 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1030 1.6965 1.2125 7 6 2.0047 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 1 0.5854 -2.5534 -0.8630 11 6 0.4563 -2.6648 1.3100 12 6 0.5383 -4.1559 1.6897 13 6 1.3842 -4.8405 0.5963 14 1 0.7401 -5.2757 -0.1677 15 7 2.2496 -5.8710 1.1855 16 6 1.5562 -7.1642 1.2543 17 1 0.4846 -7.0245 1.3967 18 6 1.8391 -8.0155 -0.0133 19 8 1.6506 -9.3755 0.4385 20 6 2.2022 -9.4537 1.7563 21 6 1.6330 -10.5700 2.6369 22 6 2.7797 -11.4531 2.1137 23 6 3.5612 -10.1531 1.8539 24 6 2.1515 -8.0508 2.3775 25 6 2.2367 -3.6940 -0.0021 26 1 -0.4850 0.8400 0.0004 27 1 0.9003 -2.0531 2.0954 28 1 -0.5837 -2.3775 1.1552 29 1 -0.4603 -4.5920 1.7170 30 1 1.0217 -4.2675 2.6603 31 1 2.5794 -5.5886 2.0963 32 1 2.8631 -7.8632 -0.3544 33 1 1.1320 -7.7735 -0.8067 34 1 1.6957 -10.3594 3.7045 35 1 0.6442 -10.9091 2.3281 36 1 2.5291 -12.0006 1.2050 37 1 3.2284 -12.0864 2.8789 38 1 4.1186 -10.1579 0.9172 39 1 4.1609 -9.8263 2.7034 40 1 1.5038 -8.0438 3.2541 41 1 3.1537 -7.7127 2.6410 42 1 3.0993 -3.4836 0.6301 43 1 2.5505 -3.9356 -1.0177 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595043622.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:06 Heat of formation + Delta-G solvation = -54.744253 kcal Electronic energy + Delta-G solvation = -20473.763799 eV Core-core repulsion = 17517.830803 eV Total energy + Delta-G solvation = -2955.932996 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.45262 -39.39082 -37.24174 -35.66200 -34.08239 -31.22205 -29.78858 -28.46373 -27.53521 -26.65206 -25.41380 -23.67410 -22.03087 -21.06582 -20.92267 -20.09570 -18.36219 -17.35969 -17.06126 -16.60808 -16.55189 -16.10674 -15.70549 -15.50881 -14.85789 -14.51548 -14.29379 -14.06201 -13.96903 -13.57466 -13.28102 -13.09631 -12.96299 -12.84768 -12.51936 -12.36426 -12.20187 -11.94607 -11.84678 -11.63630 -11.58676 -11.50397 -11.36499 -11.11257 -10.85909 -10.76010 -10.47635 -10.46734 -9.30567 -8.11324 -6.20718 1.41586 1.42898 1.50449 2.43953 2.71970 3.18914 3.24481 3.47218 3.62288 3.77025 3.93230 3.98982 3.99652 4.06120 4.21227 4.24442 4.28154 4.49582 4.68094 4.74462 4.80173 4.82340 4.84825 4.86116 4.92990 4.97125 5.03280 5.05076 5.07672 5.14794 5.16787 5.25159 5.31964 5.37226 5.44182 5.47541 5.66206 5.92141 5.98200 6.03338 6.20290 6.41192 6.50923 6.91241 7.46746 8.97727 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.054344 B = 0.003375 C = 0.003337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 515.110760 B = 8295.019693 C = 8388.832720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.009 3.991 3 Si 0.952 3.048 4 H -0.271 1.271 5 H -0.286 1.286 6 H -0.270 1.270 7 C -0.530 4.530 8 H 0.054 0.946 9 C 0.037 3.963 10 H -0.004 1.004 11 C -0.086 4.086 12 C -0.140 4.140 13 C 0.096 3.904 14 H 0.072 0.928 15 N -0.666 5.666 16 C 0.054 3.946 17 H 0.056 0.944 18 C 0.058 3.942 19 O -0.374 6.374 20 C 0.072 3.928 21 C -0.131 4.131 22 C -0.133 4.133 23 C -0.151 4.151 24 C -0.136 4.136 25 C -0.090 4.090 26 H 0.259 0.741 27 H 0.029 0.971 28 H 0.024 0.976 29 H 0.057 0.943 30 H 0.068 0.932 31 H 0.350 0.650 32 H 0.066 0.934 33 H 0.087 0.913 34 H 0.111 0.889 35 H 0.067 0.933 36 H 0.071 0.929 37 H 0.085 0.915 38 H 0.062 0.938 39 H 0.105 0.895 40 H 0.090 0.910 41 H 0.093 0.907 42 H 0.057 0.943 43 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.585 -20.228 7.016 21.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.189 4.189 3 Si 0.778 3.222 4 H -0.196 1.196 5 H -0.212 1.212 6 H -0.195 1.195 7 C -0.569 4.569 8 H 0.072 0.928 9 C 0.018 3.982 10 H 0.014 0.986 11 C -0.125 4.125 12 C -0.179 4.179 13 C -0.014 4.014 14 H 0.091 0.909 15 N -0.298 5.298 16 C -0.056 4.056 17 H 0.074 0.926 18 C -0.020 4.020 19 O -0.292 6.292 20 C 0.032 3.968 21 C -0.168 4.168 22 C -0.171 4.171 23 C -0.189 4.189 24 C -0.174 4.174 25 C -0.128 4.128 26 H 0.068 0.932 27 H 0.048 0.952 28 H 0.043 0.957 29 H 0.076 0.924 30 H 0.086 0.914 31 H 0.170 0.830 32 H 0.085 0.915 33 H 0.106 0.894 34 H 0.129 0.871 35 H 0.086 0.914 36 H 0.090 0.910 37 H 0.104 0.896 38 H 0.081 0.919 39 H 0.123 0.877 40 H 0.109 0.891 41 H 0.112 0.888 42 H 0.076 0.924 43 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 4.657 -20.454 6.311 21.906 hybrid contribution -0.555 1.715 0.411 1.849 sum 4.102 -18.739 6.721 20.326 Atomic orbital electron populations 1.70092 1.07297 1.27186 1.51612 1.25787 0.95649 1.02486 0.94971 0.85699 0.78420 0.79163 0.78920 1.19647 1.21162 1.19473 1.21536 0.92997 0.92049 1.50273 0.92813 1.19445 0.93119 0.92772 0.92896 0.98577 1.21856 0.98491 0.93638 0.98499 1.22861 0.99981 0.96238 0.98796 1.22327 0.92645 0.90991 0.95467 0.90934 1.60526 1.38298 1.01469 1.29510 1.23096 0.96877 0.89928 0.95698 0.92601 1.23637 1.01665 0.80080 0.96587 1.88719 1.80453 1.29347 1.30722 1.22853 0.95636 0.94611 0.83696 1.23162 0.99101 0.94817 0.99716 1.22778 0.96707 0.96188 1.01402 1.23427 0.95951 0.96809 1.02709 1.22997 1.03072 0.93368 0.97986 1.22351 0.97723 0.93667 0.99038 0.93197 0.95181 0.95689 0.92449 0.91369 0.82972 0.91536 0.89448 0.87080 0.91389 0.90983 0.89645 0.91930 0.87705 0.89139 0.88833 0.92405 0.93308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.62 12.63 21.45 0.27 -54.35 16 2 C 0.01 0.53 5.35 84.65 0.45 0.99 16 3 Si 0.95 44.10 29.54 68.60 2.03 46.12 16 4 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 5 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 6 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 7 C -0.53 -29.57 8.36 25.60 0.21 -29.36 16 8 H 0.05 2.93 7.77 -2.91 -0.02 2.91 16 9 C 0.04 1.85 2.73 -10.46 -0.03 1.82 16 10 H 0.00 -0.23 8.14 -2.39 -0.02 -0.24 16 11 C -0.09 -4.03 5.60 31.39 0.18 -3.85 16 12 C -0.14 -4.88 6.48 31.39 0.20 -4.68 16 13 C 0.10 3.18 3.01 45.99 0.14 3.31 16 14 H 0.07 2.43 7.89 -2.39 -0.02 2.41 16 15 N -0.67 -17.75 6.22 -456.56 -2.84 -20.59 16 16 C 0.05 1.28 3.30 46.38 0.15 1.43 16 17 H 0.06 1.40 7.87 -2.38 -0.02 1.38 16 18 C 0.06 1.43 7.43 72.77 0.54 1.97 16 19 O -0.37 -9.50 11.27 -148.98 -1.68 -11.18 16 20 C 0.07 1.41 1.38 -10.52 -0.01 1.40 16 21 C -0.13 -2.05 7.47 30.95 0.23 -1.82 16 22 C -0.13 -2.00 8.08 31.20 0.25 -1.75 16 23 C -0.15 -2.52 7.47 30.95 0.23 -2.29 16 24 C -0.14 -2.53 5.97 31.44 0.19 -2.34 16 25 C -0.09 -3.64 5.97 31.89 0.19 -3.45 16 26 H 0.26 14.66 8.31 -92.71 -0.77 13.89 16 27 H 0.03 1.49 7.83 -2.39 -0.02 1.47 16 28 H 0.02 1.26 8.06 -2.39 -0.02 1.24 16 29 H 0.06 1.87 8.14 -2.38 -0.02 1.85 16 30 H 0.07 2.12 7.55 -2.39 -0.02 2.10 16 31 H 0.35 8.60 7.71 -89.69 -0.69 7.91 16 32 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 33 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 34 H 0.11 1.29 8.11 -2.39 -0.02 1.27 16 35 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.07 1.22 8.14 -2.38 -0.02 1.20 16 37 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 38 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.10 1.39 8.08 -2.39 -0.02 1.37 16 40 H 0.09 1.44 7.94 -2.39 -0.02 1.42 16 41 H 0.09 1.60 7.68 -2.39 -0.02 1.58 16 42 H 0.06 2.35 8.05 -2.39 -0.02 2.33 16 43 H 0.05 1.95 8.14 -2.38 -0.02 1.93 16 Total: -1.00 -61.67 335.70 0.98 -60.69 By element: Atomic # 1 Polarization: 17.64 SS G_CDS: 0.27 Total: 17.92 kcal Atomic # 6 Polarization: -41.55 SS G_CDS: 2.93 Total: -38.62 kcal Atomic # 7 Polarization: -72.37 SS G_CDS: -2.57 Total: -74.93 kcal Atomic # 8 Polarization: -9.50 SS G_CDS: -1.68 Total: -11.18 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.12 kcal Total: -61.67 0.98 -60.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595043622.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.947 kcal (2) G-P(sol) polarization free energy of solvation -61.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds