Wall clock time and date at job start Mon Mar 30 2020 06:51:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99874 * 2 1 4 4 H 1.48498 * 109.47174 * 270.00281 * 3 2 1 5 5 H 1.48501 * 109.47062 * 30.00232 * 3 2 1 6 6 H 1.48503 * 109.47284 * 149.99928 * 3 2 1 7 7 C 1.37876 * 120.00355 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99840 * 359.97438 * 7 2 1 9 9 C 1.50696 * 120.00339 * 179.97438 * 7 2 1 10 10 C 1.52993 * 109.47429 * 179.97438 * 9 7 2 11 11 N 1.46906 * 109.47378 * 179.97438 * 10 9 7 12 12 C 1.48432 * 110.99886 * 170.00241 * 11 10 9 13 13 C 1.55182 * 104.98030 * 157.63399 * 12 11 10 14 14 C 1.54562 * 107.90668 * 90.56669 * 13 12 11 15 15 O 1.44854 * 103.50591 * 277.21028 * 14 13 12 16 16 C 1.44530 * 104.50996 * 316.57269 * 15 14 13 17 17 C 1.52718 * 104.85947 * 339.51691 * 13 12 11 18 18 C 1.48714 * 111.00135 * 285.39442 * 11 10 9 19 19 C 1.50442 * 118.48028 * 230.09645 * 17 13 12 20 20 C 1.52257 * 113.66657 * 24.45096 * 19 17 13 21 21 C 1.53686 * 107.09999 * 304.23701 * 20 19 17 22 22 C 1.50418 * 108.97551 * 211.71478 * 13 12 11 23 23 H 0.97000 * 119.99584 * 359.97438 * 1 2 3 24 24 H 1.09004 * 109.47043 * 59.99933 * 9 7 2 25 25 H 1.09004 * 109.47476 * 300.00008 * 9 7 2 26 26 H 1.09004 * 109.46862 * 60.00067 * 10 9 7 27 27 H 1.09000 * 109.47250 * 300.00090 * 10 9 7 28 28 H 1.09003 * 110.33582 * 276.50434 * 12 11 10 29 29 H 1.08999 * 110.34400 * 38.65000 * 12 11 10 30 30 H 1.09000 * 110.61315 * 35.71384 * 14 13 12 31 31 H 1.08998 * 110.62154 * 158.69828 * 14 13 12 32 32 H 1.08999 * 110.37567 * 282.22334 * 16 15 14 33 33 H 1.09000 * 110.37497 * 159.87571 * 16 15 14 34 34 H 1.09000 * 110.56709 * 318.59657 * 18 11 10 35 35 H 1.09003 * 110.56336 * 81.44697 * 18 11 10 36 36 H 1.08999 * 108.64646 * 263.37487 * 19 17 13 37 37 H 1.08997 * 108.54347 * 145.46108 * 19 17 13 38 38 H 1.09005 * 109.93172 * 184.83840 * 20 19 17 39 39 H 1.08999 * 109.92848 * 63.63022 * 20 19 17 40 40 H 1.09003 * 109.91832 * 312.06529 * 21 20 19 41 41 H 1.08995 * 109.92141 * 190.87958 * 21 20 19 42 42 H 1.09000 * 108.63203 * 265.07760 * 22 13 12 43 43 H 1.09000 * 108.63238 * 23.02482 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 6 4.0216 -2.6364 -0.0010 11 7 5.4907 -2.6364 -0.0022 12 6 6.0228 -4.0010 0.2385 13 6 7.4603 -3.9798 -0.3457 14 6 8.4258 -3.5531 0.7833 15 8 8.3335 -2.1075 0.7791 16 6 8.3639 -1.7468 -0.6202 17 6 7.4688 -2.8058 -1.3225 18 6 6.0226 -2.2683 -1.3413 19 6 7.9900 -3.0350 -2.7150 20 6 7.9011 -4.4853 -3.1699 21 6 8.6496 -5.3323 -2.1286 22 6 7.7963 -5.3498 -0.8679 23 1 -0.4849 0.8401 0.0004 24 1 3.8752 -0.6803 0.8889 25 1 3.8746 -0.6800 -0.8911 26 1 3.6579 -3.1504 -0.8908 27 1 3.6586 -3.1501 0.8892 28 1 6.0513 -4.2134 1.3072 29 1 5.4130 -4.7421 -0.2783 30 1 8.0976 -3.9558 1.7415 31 1 9.4434 -3.8733 0.5596 32 1 9.3831 -1.7974 -1.0031 33 1 7.9529 -0.7475 -0.7635 34 1 5.4445 -2.7516 -2.1290 35 1 6.0180 -1.1860 -1.4708 36 1 9.0333 -2.7215 -2.7526 37 1 7.4163 -2.4173 -3.4059 38 1 8.3707 -4.5977 -4.1472 39 1 6.8574 -4.7956 -3.2202 40 1 9.6201 -4.8847 -1.9141 41 1 8.7821 -6.3478 -2.5016 42 1 8.3324 -5.8964 -0.0920 43 1 6.8674 -5.8770 -1.0856 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595910709.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:51:59 Heat of formation + Delta-G solvation = -47.916260 kcal Electronic energy + Delta-G solvation = -21668.088773 eV Core-core repulsion = 18712.451861 eV Total energy + Delta-G solvation = -2955.636912 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.41316 -36.65256 -36.22468 -33.22461 -33.09517 -31.47593 -29.29388 -27.73318 -25.88058 -25.26332 -24.07261 -22.38429 -21.46476 -21.01523 -19.92592 -18.01419 -16.76174 -16.41399 -15.58040 -15.43757 -14.89112 -14.47298 -14.22904 -14.06682 -14.00683 -13.73217 -13.25286 -13.15476 -12.75463 -12.46829 -12.26081 -12.15117 -11.80015 -11.51343 -11.33402 -11.05619 -11.02092 -10.85629 -10.72868 -10.39049 -10.30591 -10.07912 -9.91545 -9.84400 -9.66989 -9.42336 -9.17298 -8.49492 -7.90762 -6.01188 -3.99023 3.34898 3.42525 3.50603 3.96323 4.17954 4.34140 4.50194 4.54855 4.74121 4.81586 4.86800 4.90992 5.05625 5.13811 5.24041 5.32015 5.33945 5.49660 5.57682 5.65832 5.68742 5.73482 5.76235 5.79927 5.82673 5.85327 5.92912 5.98588 6.00373 6.04284 6.10559 6.19859 6.25491 6.31837 6.35582 6.80623 6.91053 7.19210 7.24816 7.52600 7.68175 7.88827 8.56564 9.02819 9.61871 11.12242 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.028172 B = 0.005210 C = 0.005083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.658701 B = 5373.408335 C = 5506.955399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.068 3.932 3 Si 0.879 3.121 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.262 1.262 7 C -0.521 4.521 8 H 0.070 0.930 9 C -0.003 4.003 10 C 0.061 3.939 11 N -0.503 5.503 12 C 0.043 3.957 13 C -0.081 4.081 14 C 0.061 3.939 15 O -0.357 6.357 16 C 0.059 3.941 17 C -0.081 4.081 18 C 0.050 3.950 19 C -0.102 4.102 20 C -0.117 4.117 21 C -0.116 4.116 22 C -0.101 4.101 23 H 0.263 0.737 24 H 0.025 0.975 25 H 0.008 0.992 26 H 0.027 0.973 27 H 0.065 0.935 28 H 0.077 0.923 29 H 0.040 0.960 30 H 0.090 0.910 31 H 0.053 0.947 32 H 0.051 0.949 33 H 0.090 0.910 34 H 0.043 0.957 35 H 0.082 0.918 36 H 0.062 0.938 37 H 0.066 0.934 38 H 0.064 0.936 39 H 0.065 0.935 40 H 0.062 0.938 41 H 0.064 0.936 42 H 0.063 0.937 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.499 -10.135 -4.718 23.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.133 4.133 3 Si 0.706 3.294 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.186 1.186 7 C -0.559 4.559 8 H 0.088 0.912 9 C -0.041 4.041 10 C -0.067 4.067 11 N -0.226 5.226 12 C -0.085 4.085 13 C -0.082 4.082 14 C -0.016 4.016 15 O -0.274 6.274 16 C -0.018 4.018 17 C -0.082 4.082 18 C -0.079 4.079 19 C -0.140 4.140 20 C -0.155 4.155 21 C -0.154 4.154 22 C -0.139 4.139 23 H 0.072 0.928 24 H 0.043 0.957 25 H 0.027 0.973 26 H 0.045 0.955 27 H 0.084 0.916 28 H 0.095 0.905 29 H 0.058 0.942 30 H 0.109 0.891 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.109 0.891 34 H 0.062 0.938 35 H 0.100 0.900 36 H 0.081 0.919 37 H 0.085 0.915 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.081 0.919 41 H 0.083 0.917 42 H 0.082 0.918 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 20.456 -9.470 -4.074 22.907 hybrid contribution -0.127 0.225 -0.798 0.838 sum 20.330 -9.244 -4.871 22.858 Atomic orbital electron populations 1.69919 1.06323 1.26866 1.51335 1.24983 0.94692 0.99156 0.94483 0.86777 0.80657 0.83485 0.78458 1.20430 1.21435 1.18615 1.21102 0.89521 0.94439 1.50852 0.91232 1.19480 0.96214 0.91633 0.96754 1.22292 0.84168 1.00492 0.99713 1.65476 1.10101 1.21023 1.25992 1.23516 0.92732 0.91581 1.00674 1.21561 0.96782 0.94452 0.95359 1.23659 0.97051 0.82369 0.98508 1.89307 1.94675 1.19980 1.23474 1.23916 0.97158 0.98813 0.81912 1.21561 0.96901 0.94943 0.94762 1.23301 0.92202 1.01037 0.91327 1.20839 1.01071 0.97357 0.94718 1.21528 1.00858 0.95012 0.98089 1.21529 0.98593 0.99869 0.95401 1.20829 1.00509 0.94956 0.97608 0.92778 0.95671 0.97333 0.95498 0.91611 0.90465 0.94175 0.89144 0.92919 0.93060 0.89135 0.93841 0.89985 0.91899 0.91541 0.91729 0.91672 0.91890 0.91748 0.91843 0.91685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.45 13.96 55.43 0.77 -27.68 16 2 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 3 Si 0.88 22.43 27.47 -169.99 -4.67 17.76 16 4 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 5 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 6 H -0.26 -6.55 6.54 56.52 0.37 -6.18 16 7 C -0.52 -15.24 9.66 -34.44 -0.33 -15.57 16 8 H 0.07 2.17 7.99 -52.49 -0.42 1.75 16 9 C 0.00 -0.08 4.16 -27.89 -0.12 -0.19 16 10 C 0.06 1.28 4.75 -3.82 -0.02 1.26 16 11 N -0.50 -9.06 5.07 -229.46 -1.16 -10.22 16 12 C 0.04 0.63 5.35 -1.82 -0.01 0.62 16 13 C -0.08 -0.96 0.94 -153.97 -0.15 -1.11 16 14 C 0.06 0.74 6.24 37.98 0.24 0.97 16 15 O -0.36 -5.47 11.44 -35.23 -0.40 -5.87 16 16 C 0.06 0.77 6.46 38.45 0.25 1.02 16 17 C -0.08 -1.01 0.95 -153.95 -0.15 -1.15 16 18 C 0.05 0.79 4.54 -2.14 -0.01 0.78 16 19 C -0.10 -1.03 4.90 -28.39 -0.14 -1.17 16 20 C -0.12 -1.06 6.06 -26.75 -0.16 -1.22 16 21 C -0.12 -0.96 6.06 -26.76 -0.16 -1.13 16 22 C -0.10 -0.96 4.88 -28.41 -0.14 -1.10 16 23 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 24 H 0.02 0.65 7.20 -51.93 -0.37 0.28 16 25 H 0.01 0.21 6.88 -51.93 -0.36 -0.15 16 26 H 0.03 0.57 7.78 -51.93 -0.40 0.16 16 27 H 0.07 1.40 8.08 -51.93 -0.42 0.98 16 28 H 0.08 1.11 7.45 -51.93 -0.39 0.72 16 29 H 0.04 0.58 7.14 -51.93 -0.37 0.21 16 30 H 0.09 1.04 7.52 -51.93 -0.39 0.65 16 31 H 0.05 0.54 8.07 -51.93 -0.42 0.12 16 32 H 0.05 0.56 7.31 -51.93 -0.38 0.18 16 33 H 0.09 1.22 7.45 -51.93 -0.39 0.84 16 34 H 0.04 0.70 7.71 -51.93 -0.40 0.30 16 35 H 0.08 1.37 7.19 -51.93 -0.37 1.00 16 36 H 0.06 0.56 7.13 -51.93 -0.37 0.19 16 37 H 0.07 0.68 7.74 -51.93 -0.40 0.28 16 38 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.06 0.66 8.05 -51.93 -0.42 0.24 16 40 H 0.06 0.51 8.05 -51.93 -0.42 0.09 16 41 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.06 0.53 7.76 -51.93 -0.40 0.12 16 43 H 0.06 0.65 7.15 -51.93 -0.37 0.27 16 LS Contribution 317.37 15.07 4.78 4.78 Total: -1.00 -31.99 317.37 -9.15 -41.13 By element: Atomic # 1 Polarization: 3.63 SS G_CDS: -7.48 Total: -3.85 kcal Atomic # 6 Polarization: -15.07 SS G_CDS: -0.99 Total: -16.06 kcal Atomic # 7 Polarization: -37.51 SS G_CDS: -0.39 Total: -37.90 kcal Atomic # 8 Polarization: -5.47 SS G_CDS: -0.40 Total: -5.87 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -4.67 Total: 17.76 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -31.99 -9.15 -41.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595910709.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.782 kcal (2) G-P(sol) polarization free energy of solvation -31.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds