Wall clock time and date at job start Mon Mar 30 2020 06:51:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99874 * 2 1 4 4 H 1.48498 * 109.47174 * 270.00281 * 3 2 1 5 5 H 1.48501 * 109.47062 * 30.00232 * 3 2 1 6 6 H 1.48503 * 109.47284 * 149.99928 * 3 2 1 7 7 C 1.37876 * 120.00355 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99840 * 359.97438 * 7 2 1 9 9 C 1.50696 * 120.00339 * 179.97438 * 7 2 1 10 10 C 1.52993 * 109.47429 * 179.97438 * 9 7 2 11 11 N 1.46906 * 109.47378 * 179.97438 * 10 9 7 12 12 C 1.48432 * 110.99886 * 170.00241 * 11 10 9 13 13 C 1.55182 * 104.98030 * 157.63399 * 12 11 10 14 14 C 1.54562 * 107.90668 * 90.56669 * 13 12 11 15 15 O 1.44854 * 103.50591 * 277.21028 * 14 13 12 16 16 C 1.44530 * 104.50996 * 316.57269 * 15 14 13 17 17 C 1.52718 * 104.85947 * 339.51691 * 13 12 11 18 18 C 1.48714 * 111.00135 * 285.39442 * 11 10 9 19 19 C 1.50442 * 118.48028 * 230.09645 * 17 13 12 20 20 C 1.52257 * 113.66657 * 24.45096 * 19 17 13 21 21 C 1.53686 * 107.09999 * 304.23701 * 20 19 17 22 22 C 1.50418 * 108.97551 * 211.71478 * 13 12 11 23 23 H 0.97000 * 119.99584 * 359.97438 * 1 2 3 24 24 H 1.09004 * 109.47043 * 59.99933 * 9 7 2 25 25 H 1.09004 * 109.47476 * 300.00008 * 9 7 2 26 26 H 1.09004 * 109.46862 * 60.00067 * 10 9 7 27 27 H 1.09000 * 109.47250 * 300.00090 * 10 9 7 28 28 H 1.09003 * 110.33582 * 276.50434 * 12 11 10 29 29 H 1.08999 * 110.34400 * 38.65000 * 12 11 10 30 30 H 1.09000 * 110.61315 * 35.71384 * 14 13 12 31 31 H 1.08998 * 110.62154 * 158.69828 * 14 13 12 32 32 H 1.08999 * 110.37567 * 282.22334 * 16 15 14 33 33 H 1.09000 * 110.37497 * 159.87571 * 16 15 14 34 34 H 1.09000 * 110.56709 * 318.59657 * 18 11 10 35 35 H 1.09003 * 110.56336 * 81.44697 * 18 11 10 36 36 H 1.08999 * 108.64646 * 263.37487 * 19 17 13 37 37 H 1.08997 * 108.54347 * 145.46108 * 19 17 13 38 38 H 1.09005 * 109.93172 * 184.83840 * 20 19 17 39 39 H 1.08999 * 109.92848 * 63.63022 * 20 19 17 40 40 H 1.09003 * 109.91832 * 312.06529 * 21 20 19 41 41 H 1.08995 * 109.92141 * 190.87958 * 21 20 19 42 42 H 1.09000 * 108.63203 * 265.07760 * 22 13 12 43 43 H 1.09000 * 108.63238 * 23.02482 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 6 4.0216 -2.6364 -0.0010 11 7 5.4907 -2.6364 -0.0022 12 6 6.0228 -4.0010 0.2385 13 6 7.4603 -3.9798 -0.3457 14 6 8.4258 -3.5531 0.7833 15 8 8.3335 -2.1075 0.7791 16 6 8.3639 -1.7468 -0.6202 17 6 7.4688 -2.8058 -1.3225 18 6 6.0226 -2.2683 -1.3413 19 6 7.9900 -3.0350 -2.7150 20 6 7.9011 -4.4853 -3.1699 21 6 8.6496 -5.3323 -2.1286 22 6 7.7963 -5.3498 -0.8679 23 1 -0.4849 0.8401 0.0004 24 1 3.8752 -0.6803 0.8889 25 1 3.8746 -0.6800 -0.8911 26 1 3.6579 -3.1504 -0.8908 27 1 3.6586 -3.1501 0.8892 28 1 6.0513 -4.2134 1.3072 29 1 5.4130 -4.7421 -0.2783 30 1 8.0976 -3.9558 1.7415 31 1 9.4434 -3.8733 0.5596 32 1 9.3831 -1.7974 -1.0031 33 1 7.9529 -0.7475 -0.7635 34 1 5.4445 -2.7516 -2.1290 35 1 6.0180 -1.1860 -1.4708 36 1 9.0333 -2.7215 -2.7526 37 1 7.4163 -2.4173 -3.4059 38 1 8.3707 -4.5977 -4.1472 39 1 6.8574 -4.7956 -3.2202 40 1 9.6201 -4.8847 -1.9141 41 1 8.7821 -6.3478 -2.5016 42 1 8.3324 -5.8964 -0.0920 43 1 6.8674 -5.8770 -1.0856 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595910709.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:51:58 Heat of formation + Delta-G solvation = -69.530734 kcal Electronic energy + Delta-G solvation = -21669.026046 eV Core-core repulsion = 18712.451861 eV Total energy + Delta-G solvation = -2956.574185 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.43032 -37.94762 -37.19926 -35.19463 -34.08460 -33.08983 -30.86158 -28.60779 -27.02441 -26.94976 -25.02613 -23.81889 -22.32873 -22.13625 -21.65795 -19.02338 -18.89284 -17.46336 -16.67700 -16.51507 -16.29601 -16.04411 -15.48211 -15.19660 -15.04010 -14.96655 -14.67464 -14.42668 -14.13612 -13.87935 -13.54582 -13.38702 -13.04048 -12.85687 -12.62895 -12.50116 -12.14810 -11.91535 -11.81834 -11.77051 -11.62765 -11.55322 -11.42912 -11.18950 -11.10681 -10.90201 -10.79541 -10.49479 -9.34909 -8.33778 -6.38014 1.31550 1.34778 1.48594 2.33264 2.94845 3.01647 3.21088 3.26033 3.35859 3.85626 3.90141 4.03644 4.15692 4.17685 4.24112 4.25813 4.37447 4.45966 4.51435 4.60633 4.65261 4.74413 4.77608 4.78767 4.81013 4.87972 4.91084 4.94681 4.97880 5.02725 5.09654 5.19214 5.23828 5.31923 5.34366 5.38777 5.43211 5.53270 5.58802 5.90860 6.03946 6.12068 6.25226 6.68792 7.27089 8.82962 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.028172 B = 0.005210 C = 0.005083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.658701 B = 5373.408335 C = 5506.955399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C 0.010 3.990 3 Si 0.949 3.051 4 H -0.264 1.264 5 H -0.280 1.280 6 H -0.254 1.254 7 C -0.534 4.534 8 H 0.033 0.967 9 C 0.007 3.993 10 C 0.074 3.926 11 N -0.517 5.517 12 C 0.039 3.961 13 C -0.071 4.071 14 C 0.059 3.941 15 O -0.390 6.390 16 C 0.056 3.944 17 C -0.072 4.072 18 C 0.044 3.956 19 C -0.101 4.101 20 C -0.117 4.117 21 C -0.111 4.111 22 C -0.100 4.100 23 H 0.268 0.732 24 H 0.016 0.984 25 H 0.012 0.988 26 H 0.020 0.980 27 H 0.057 0.943 28 H 0.077 0.923 29 H 0.040 0.960 30 H 0.092 0.908 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.077 0.923 34 H 0.037 0.963 35 H 0.068 0.932 36 H 0.083 0.917 37 H 0.061 0.939 38 H 0.081 0.919 39 H 0.048 0.952 40 H 0.074 0.926 41 H 0.080 0.920 42 H 0.081 0.919 43 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.736 -10.401 -5.466 26.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.187 4.187 3 Si 0.773 3.227 4 H -0.189 1.189 5 H -0.205 1.205 6 H -0.178 1.178 7 C -0.573 4.573 8 H 0.051 0.949 9 C -0.031 4.031 10 C -0.054 4.054 11 N -0.240 5.240 12 C -0.089 4.089 13 C -0.072 4.072 14 C -0.018 4.018 15 O -0.309 6.309 16 C -0.021 4.021 17 C -0.073 4.073 18 C -0.084 4.084 19 C -0.139 4.139 20 C -0.155 4.155 21 C -0.148 4.148 22 C -0.138 4.138 23 H 0.077 0.923 24 H 0.034 0.966 25 H 0.031 0.969 26 H 0.038 0.962 27 H 0.075 0.925 28 H 0.095 0.905 29 H 0.058 0.942 30 H 0.110 0.890 31 H 0.098 0.902 32 H 0.098 0.902 33 H 0.095 0.905 34 H 0.055 0.945 35 H 0.087 0.913 36 H 0.101 0.899 37 H 0.080 0.920 38 H 0.100 0.900 39 H 0.067 0.933 40 H 0.092 0.908 41 H 0.098 0.902 42 H 0.099 0.901 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 23.707 -9.757 -4.828 26.087 hybrid contribution -1.209 0.246 -0.542 1.347 sum 22.498 -9.511 -5.370 25.009 Atomic orbital electron populations 1.70054 1.08148 1.28255 1.52432 1.25924 0.95576 1.03293 0.93895 0.85669 0.79349 0.78422 0.79304 1.18880 1.20511 1.17812 1.21398 0.91784 0.93268 1.50814 0.94905 1.19315 0.93386 0.94180 0.96211 1.21955 0.86713 0.97697 0.99009 1.65379 1.07574 1.23548 1.27523 1.23648 0.94663 0.89565 1.01026 1.21558 0.94687 0.95735 0.95195 1.23838 0.98446 0.80900 0.98586 1.89271 1.94977 1.21877 1.24778 1.24031 0.98630 0.98203 0.81213 1.21543 0.94319 0.94956 0.96484 1.23368 0.94672 1.00364 0.89965 1.20846 1.01955 0.98281 0.92768 1.21541 1.00318 0.94251 0.99353 1.21530 0.98454 1.00739 0.94116 1.20828 1.00851 0.93128 0.98964 0.92331 0.96602 0.96921 0.96177 0.92465 0.90468 0.94176 0.89011 0.90175 0.90224 0.90462 0.94488 0.91336 0.89869 0.92043 0.89997 0.93275 0.90757 0.90177 0.90056 0.92388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.97 13.96 21.45 0.30 -60.67 16 2 C 0.01 0.63 5.47 84.65 0.46 1.09 16 3 Si 0.95 46.51 27.47 68.60 1.88 48.39 16 4 H -0.26 -12.27 7.11 99.48 0.71 -11.56 16 5 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 6 H -0.25 -12.06 6.54 99.48 0.65 -11.41 16 7 C -0.53 -32.33 9.66 25.60 0.25 -32.09 16 8 H 0.03 2.16 7.99 -2.91 -0.02 2.13 16 9 C 0.01 0.35 4.16 29.84 0.12 0.48 16 10 C 0.07 3.23 4.75 86.30 0.41 3.64 16 11 N -0.52 -18.73 5.07 -879.89 -4.46 -23.19 16 12 C 0.04 1.11 5.35 86.76 0.46 1.58 16 13 C -0.07 -1.54 0.94 -51.83 -0.05 -1.59 16 14 C 0.06 1.26 6.24 72.51 0.45 1.71 16 15 O -0.39 -11.29 11.44 -148.98 -1.70 -13.00 16 16 C 0.06 1.34 6.46 72.82 0.47 1.81 16 17 C -0.07 -1.67 0.95 -51.82 -0.05 -1.72 16 18 C 0.04 1.40 4.54 86.39 0.39 1.79 16 19 C -0.10 -1.75 4.90 29.52 0.14 -1.61 16 20 C -0.12 -1.75 6.06 30.58 0.19 -1.57 16 21 C -0.11 -1.39 6.06 30.57 0.19 -1.21 16 22 C -0.10 -1.59 4.88 29.51 0.14 -1.45 16 23 H 0.27 15.98 8.31 -92.71 -0.77 15.21 16 24 H 0.02 0.83 7.20 -2.38 -0.02 0.81 16 25 H 0.01 0.62 6.88 -2.39 -0.02 0.61 16 26 H 0.02 0.88 7.78 -2.38 -0.02 0.86 16 27 H 0.06 2.53 8.08 -2.39 -0.02 2.51 16 28 H 0.08 2.19 7.45 -2.39 -0.02 2.17 16 29 H 0.04 1.15 7.14 -2.39 -0.02 1.13 16 30 H 0.09 1.92 7.52 -2.39 -0.02 1.90 16 31 H 0.08 1.30 8.07 -2.39 -0.02 1.28 16 32 H 0.08 1.45 7.31 -2.39 -0.02 1.43 16 33 H 0.08 2.02 7.45 -2.39 -0.02 2.00 16 34 H 0.04 1.20 7.71 -2.39 -0.02 1.18 16 35 H 0.07 2.31 7.19 -2.39 -0.02 2.30 16 36 H 0.08 1.15 7.13 -2.39 -0.02 1.13 16 37 H 0.06 1.14 7.74 -2.39 -0.02 1.12 16 38 H 0.08 0.97 8.14 -2.38 -0.02 0.95 16 39 H 0.05 0.90 8.05 -2.39 -0.02 0.88 16 40 H 0.07 0.81 8.05 -2.39 -0.02 0.79 16 41 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 42 H 0.08 1.03 7.76 -2.39 -0.02 1.01 16 43 H 0.06 1.02 7.15 -2.39 -0.02 1.01 16 Total: -1.00 -70.44 317.37 0.51 -69.93 By element: Atomic # 1 Polarization: 6.77 SS G_CDS: 0.91 Total: 7.68 kcal Atomic # 6 Polarization: -32.72 SS G_CDS: 3.58 Total: -29.14 kcal Atomic # 7 Polarization: -79.70 SS G_CDS: -4.16 Total: -83.86 kcal Atomic # 8 Polarization: -11.29 SS G_CDS: -1.70 Total: -13.00 kcal Atomic # 14 Polarization: 46.51 SS G_CDS: 1.88 Total: 48.39 kcal Total: -70.44 0.51 -69.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595910709.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.396 kcal (2) G-P(sol) polarization free energy of solvation -70.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds