Wall clock time and date at job start Mon Mar 30 2020 07:50:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48506 * 109.47297 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47261 * 239.99650 * 3 2 1 6 6 H 1.48500 * 109.47454 * 119.99643 * 3 2 1 7 7 C 1.37875 * 120.00192 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00135 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00046 * 0.02562 * 7 2 1 10 10 H 1.08996 * 110.67524 * 59.29682 * 9 7 2 11 11 C 1.54887 * 110.75486 * 296.05727 * 9 7 2 12 12 C 1.54466 * 104.10264 * 203.89491 * 11 9 7 13 13 C 1.53872 * 106.68575 * 23.34703 * 12 11 9 14 14 H 1.09004 * 110.02755 * 240.87538 * 13 12 11 15 15 N 1.46895 * 110.03663 * 119.44164 * 13 12 11 16 16 C 1.46905 * 110.99957 * 87.83048 * 15 13 12 17 17 H 1.08994 * 110.80350 * 34.30289 * 16 15 13 18 18 C 1.54991 * 110.90897 * 270.67399 * 16 15 13 19 19 O 1.44380 * 103.49333 * 204.77932 * 18 16 15 20 20 C 1.43745 * 106.97182 * 40.06160 * 19 18 16 21 21 H 1.08989 * 109.88108 * 92.91395 * 20 19 18 22 22 C 1.53011 * 109.87676 * 213.91789 * 20 19 18 23 23 C 1.52997 * 117.49638 * 7.16448 * 22 20 19 24 24 C 1.53002 * 117.49219 * 298.54381 * 22 20 19 25 25 C 1.54165 * 107.29947 * 333.45805 * 20 19 18 26 26 C 1.54262 * 106.59834 * 0.15503 * 13 12 11 27 27 H 0.97001 * 119.99934 * 179.97438 * 1 2 3 28 28 H 1.09002 * 110.49129 * 322.42590 * 11 9 7 29 29 H 1.09005 * 110.48641 * 85.06664 * 11 9 7 30 30 H 1.08998 * 109.85553 * 264.10176 * 12 11 9 31 31 H 1.09002 * 110.15919 * 142.75037 * 12 11 9 32 32 H 1.00907 * 110.99655 * 323.88001 * 15 13 12 33 33 H 1.09006 * 110.62273 * 323.27951 * 18 16 15 34 34 H 1.09001 * 110.62153 * 86.27742 * 18 16 15 35 35 H 1.08992 * 115.55034 * 152.87699 * 22 20 19 36 36 H 1.08998 * 117.50349 * 359.97438 * 23 22 20 37 37 H 1.09002 * 117.49955 * 145.02809 * 23 22 20 38 38 H 1.08998 * 117.49431 * 214.97763 * 24 22 20 39 39 H 1.08998 * 117.50129 * 0.02562 * 24 22 20 40 40 H 1.09004 * 110.52212 * 243.40110 * 25 20 19 41 41 H 1.08995 * 110.48510 * 120.73543 * 25 20 19 42 42 H 1.09003 * 110.49046 * 217.71565 * 26 13 12 43 43 H 1.09007 * 110.59977 * 95.12380 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1029 1.6964 -1.2125 6 1 3.1028 1.6966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6081 -2.5723 -0.8765 11 6 0.4252 -2.6561 1.3014 12 6 0.2410 -4.1827 1.4483 13 6 1.3858 -4.8437 0.6610 14 1 0.9799 -5.4632 -0.1387 15 7 2.2104 -5.6601 1.5617 16 6 1.6762 -7.0241 1.6729 17 1 1.2362 -7.3456 0.7289 18 6 0.6448 -7.1220 2.8256 19 8 0.6804 -8.5181 3.1919 20 6 2.0570 -8.9292 3.1446 21 1 2.5098 -8.8225 4.1302 22 6 2.1494 -10.3857 2.6848 23 6 0.8601 -11.0605 2.2124 24 6 1.4766 -11.4463 3.5586 25 6 2.7751 -8.0117 2.1351 26 6 2.2298 -3.6980 0.0652 27 1 -0.4850 -0.8401 -0.0004 28 1 0.9752 -2.2559 2.1532 29 1 -0.5404 -2.1600 1.2025 30 1 -0.7206 -4.4814 1.0309 31 1 0.2966 -4.4684 2.4988 32 1 2.2902 -5.2279 2.4700 33 1 0.9475 -6.4969 3.6657 34 1 -0.3491 -6.8421 2.4762 35 1 3.0760 -10.6619 2.1817 36 1 -0.0540 -10.4671 2.2296 37 1 0.9383 -11.7809 1.3982 38 1 1.9603 -12.4204 3.6298 39 1 0.9678 -11.1064 4.4606 40 1 3.1474 -8.5909 1.2900 41 1 3.5906 -7.4754 2.6201 42 1 2.5781 -3.9603 -0.9338 43 1 3.0744 -3.4663 0.7141 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597137646.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:50:53 Heat of formation + Delta-G solvation = -37.010692 kcal Electronic energy + Delta-G solvation = -20462.648101 eV Core-core repulsion = 17507.484091 eV Total energy + Delta-G solvation = -2955.164011 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.10434 -38.01940 -36.53923 -34.43151 -32.31817 -30.52616 -28.40277 -28.05650 -25.64861 -23.90389 -23.38109 -22.49573 -21.19505 -20.49027 -19.54189 -19.41862 -16.89503 -16.52168 -16.39504 -15.81675 -14.96927 -14.80934 -14.49700 -13.83316 -13.71772 -13.68860 -13.06279 -12.73054 -12.49776 -12.15447 -12.05925 -11.81053 -11.61022 -11.57931 -11.02865 -10.98322 -10.86573 -10.64254 -10.45213 -10.37544 -10.20844 -10.05974 -9.93014 -9.76199 -9.73481 -9.36458 -8.44343 -8.31151 -8.13463 -6.28749 -4.00949 3.45612 3.46902 3.54661 3.65590 3.66675 4.30000 4.46320 4.57102 4.57716 4.75732 4.78347 4.83816 4.99210 5.16327 5.27270 5.34371 5.39836 5.45102 5.47958 5.52838 5.61811 5.62480 5.70958 5.74423 5.88101 5.92898 5.98824 6.08150 6.10811 6.32195 6.47496 6.54365 6.64483 6.73949 6.86050 6.93934 7.07036 7.36352 7.39916 7.56267 7.72513 8.30618 8.49234 8.93830 9.70811 11.08616 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.057102 B = 0.003370 C = 0.003300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 490.234054 B = 8305.522025 C = 8483.944311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.018 3.982 3 Si 1.065 2.935 4 H -0.284 1.284 5 H -0.289 1.289 6 H -0.289 1.289 7 C -0.591 4.591 8 H 0.048 0.952 9 C 0.032 3.968 10 H 0.020 0.980 11 C -0.113 4.113 12 C -0.153 4.153 13 C 0.082 3.918 14 H 0.068 0.932 15 N -0.669 5.669 16 C 0.059 3.941 17 H 0.091 0.909 18 C 0.019 3.981 19 O -0.372 6.372 20 C 0.104 3.896 21 H 0.070 0.930 22 C -0.160 4.160 23 C -0.166 4.166 24 C -0.178 4.178 25 C -0.138 4.138 26 C -0.094 4.094 27 H 0.272 0.728 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.051 0.949 31 H 0.048 0.952 32 H 0.343 0.657 33 H 0.060 0.940 34 H 0.091 0.909 35 H 0.113 0.887 36 H 0.104 0.896 37 H 0.089 0.911 38 H 0.091 0.909 39 H 0.094 0.906 40 H 0.079 0.921 41 H 0.083 0.917 42 H 0.047 0.953 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.943 -19.181 5.969 20.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.186 4.186 3 Si 0.894 3.106 4 H -0.209 1.209 5 H -0.215 1.215 6 H -0.215 1.215 7 C -0.629 4.629 8 H 0.067 0.933 9 C 0.013 3.987 10 H 0.038 0.962 11 C -0.152 4.152 12 C -0.192 4.192 13 C -0.027 4.027 14 H 0.086 0.914 15 N -0.300 5.300 16 C -0.052 4.052 17 H 0.109 0.891 18 C -0.059 4.059 19 O -0.291 6.291 20 C 0.046 3.954 21 H 0.088 0.912 22 C -0.178 4.178 23 C -0.203 4.203 24 C -0.215 4.215 25 C -0.176 4.176 26 C -0.133 4.133 27 H 0.084 0.916 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.067 0.933 32 H 0.162 0.838 33 H 0.078 0.922 34 H 0.110 0.890 35 H 0.130 0.870 36 H 0.123 0.877 37 H 0.108 0.892 38 H 0.109 0.891 39 H 0.113 0.887 40 H 0.098 0.902 41 H 0.101 0.899 42 H 0.066 0.934 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 3.030 -17.840 5.535 18.923 hybrid contribution -0.455 -1.427 0.573 1.603 sum 2.576 -19.267 6.108 20.375 Atomic orbital electron populations 1.70804 1.06867 1.30961 1.46657 1.25764 0.96573 1.02486 0.93744 0.83594 0.74921 0.75588 0.76479 1.20902 1.21525 1.21539 1.21955 0.94023 0.91463 1.55472 0.93337 1.19743 0.93046 0.93386 0.92515 0.96210 1.22558 1.00527 0.91159 1.00939 1.23017 0.98324 0.99582 0.98290 1.22428 0.92141 0.94275 0.93901 0.91410 1.60704 1.51611 1.01212 1.16449 1.23182 0.92999 0.90618 0.98394 0.89127 1.24429 1.01503 0.83059 0.96937 1.88838 1.25027 1.24991 1.90198 1.22212 0.82861 0.92288 0.98073 0.91247 1.22531 0.97898 0.92251 1.05102 1.22861 0.97577 1.02615 0.97200 1.22932 1.04337 0.98871 0.95381 1.22947 0.98703 0.96774 0.99225 1.22320 0.98528 0.93677 0.98728 0.91637 0.92762 0.92692 0.93030 0.93345 0.83777 0.92194 0.89045 0.86952 0.87724 0.89249 0.89082 0.88749 0.90203 0.89859 0.93419 0.91763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.36 13.45 55.43 0.75 -26.62 16 2 C 0.02 0.52 5.35 -17.82 -0.10 0.42 16 3 Si 1.07 25.15 29.90 -169.99 -5.08 20.07 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 6 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.59 -16.44 8.52 -34.44 -0.29 -16.73 16 8 H 0.05 1.35 7.78 -52.48 -0.41 0.94 16 9 C 0.03 0.78 2.40 -89.78 -0.22 0.57 16 10 H 0.02 0.52 8.00 -51.93 -0.42 0.11 16 11 C -0.11 -2.53 5.62 -24.97 -0.14 -2.67 16 12 C -0.15 -2.68 6.07 -25.51 -0.15 -2.83 16 13 C 0.08 1.38 3.23 -66.60 -0.22 1.17 16 14 H 0.07 1.12 7.47 -51.93 -0.39 0.73 16 15 N -0.67 -9.59 6.06 -96.49 -0.58 -10.17 16 16 C 0.06 0.73 3.42 -65.71 -0.22 0.51 16 17 H 0.09 1.17 7.50 -51.93 -0.39 0.78 16 18 C 0.02 0.23 6.12 38.21 0.23 0.46 16 19 O -0.37 -4.63 9.58 -35.23 -0.34 -4.97 16 20 C 0.10 1.09 3.78 -26.12 -0.10 0.99 16 21 H 0.07 0.71 8.14 -51.94 -0.42 0.28 16 22 C -0.16 -1.50 5.55 -90.61 -0.50 -2.00 16 23 C -0.17 -1.58 9.88 -26.73 -0.26 -1.84 16 24 C -0.18 -1.57 10.21 -26.73 -0.27 -1.85 16 25 C -0.14 -1.48 6.39 -25.17 -0.16 -1.64 16 26 C -0.09 -1.94 5.95 -25.07 -0.15 -2.09 16 27 H 0.27 7.99 5.40 -40.82 -0.22 7.77 16 28 H 0.05 1.27 8.04 -51.93 -0.42 0.85 16 29 H 0.05 1.31 6.47 -51.93 -0.34 0.98 16 30 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 31 H 0.05 0.76 6.77 -51.93 -0.35 0.41 16 32 H 0.34 4.83 7.68 -39.29 -0.30 4.53 16 33 H 0.06 0.71 7.79 -51.93 -0.40 0.30 16 34 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.11 0.92 7.99 -51.93 -0.41 0.51 16 36 H 0.10 1.14 7.06 -51.93 -0.37 0.78 16 37 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 38 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.08 0.81 7.61 -51.93 -0.39 0.42 16 41 H 0.08 0.88 8.06 -51.93 -0.42 0.47 16 42 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 43 H 0.06 1.37 7.95 -51.93 -0.41 0.95 16 LS Contribution 331.37 15.07 4.99 4.99 Total: -1.00 -29.11 331.37 -10.22 -39.32 By element: Atomic # 1 Polarization: 12.30 SS G_CDS: -7.40 Total: 4.90 kcal Atomic # 6 Polarization: -24.97 SS G_CDS: -2.55 Total: -27.53 kcal Atomic # 7 Polarization: -36.95 SS G_CDS: 0.16 Total: -36.79 kcal Atomic # 8 Polarization: -4.63 SS G_CDS: -0.34 Total: -4.97 kcal Atomic # 14 Polarization: 25.15 SS G_CDS: -5.08 Total: 20.07 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -29.11 -10.22 -39.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597137646.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.313 kcal (2) G-P(sol) polarization free energy of solvation -29.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds