Wall clock time and date at job start Mon Mar 30 2020 07:50:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48506 * 109.47297 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47261 * 239.99650 * 3 2 1 6 6 H 1.48500 * 109.47454 * 119.99643 * 3 2 1 7 7 C 1.37875 * 120.00192 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00135 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00046 * 0.02562 * 7 2 1 10 10 H 1.08996 * 110.67524 * 59.29682 * 9 7 2 11 11 C 1.54887 * 110.75486 * 296.05727 * 9 7 2 12 12 C 1.54466 * 104.10264 * 203.89491 * 11 9 7 13 13 C 1.53872 * 106.68575 * 23.34703 * 12 11 9 14 14 H 1.09004 * 110.02755 * 240.87538 * 13 12 11 15 15 N 1.46895 * 110.03663 * 119.44164 * 13 12 11 16 16 C 1.46905 * 110.99957 * 87.83048 * 15 13 12 17 17 H 1.08994 * 110.80350 * 34.30289 * 16 15 13 18 18 C 1.54991 * 110.90897 * 270.67399 * 16 15 13 19 19 O 1.44380 * 103.49333 * 204.77932 * 18 16 15 20 20 C 1.43745 * 106.97182 * 40.06160 * 19 18 16 21 21 H 1.08989 * 109.88108 * 92.91395 * 20 19 18 22 22 C 1.53011 * 109.87676 * 213.91789 * 20 19 18 23 23 C 1.52997 * 117.49638 * 7.16448 * 22 20 19 24 24 C 1.53002 * 117.49219 * 298.54381 * 22 20 19 25 25 C 1.54165 * 107.29947 * 333.45805 * 20 19 18 26 26 C 1.54262 * 106.59834 * 0.15503 * 13 12 11 27 27 H 0.97001 * 119.99934 * 179.97438 * 1 2 3 28 28 H 1.09002 * 110.49129 * 322.42590 * 11 9 7 29 29 H 1.09005 * 110.48641 * 85.06664 * 11 9 7 30 30 H 1.08998 * 109.85553 * 264.10176 * 12 11 9 31 31 H 1.09002 * 110.15919 * 142.75037 * 12 11 9 32 32 H 1.00907 * 110.99655 * 323.88001 * 15 13 12 33 33 H 1.09006 * 110.62273 * 323.27951 * 18 16 15 34 34 H 1.09001 * 110.62153 * 86.27742 * 18 16 15 35 35 H 1.08992 * 115.55034 * 152.87699 * 22 20 19 36 36 H 1.08998 * 117.50349 * 359.97438 * 23 22 20 37 37 H 1.09002 * 117.49955 * 145.02809 * 23 22 20 38 38 H 1.08998 * 117.49431 * 214.97763 * 24 22 20 39 39 H 1.08998 * 117.50129 * 0.02562 * 24 22 20 40 40 H 1.09004 * 110.52212 * 243.40110 * 25 20 19 41 41 H 1.08995 * 110.48510 * 120.73543 * 25 20 19 42 42 H 1.09003 * 110.49046 * 217.71565 * 26 13 12 43 43 H 1.09007 * 110.59977 * 95.12380 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1029 1.6964 -1.2125 6 1 3.1028 1.6966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6081 -2.5723 -0.8765 11 6 0.4252 -2.6561 1.3014 12 6 0.2410 -4.1827 1.4483 13 6 1.3858 -4.8437 0.6610 14 1 0.9799 -5.4632 -0.1387 15 7 2.2104 -5.6601 1.5617 16 6 1.6762 -7.0241 1.6729 17 1 1.2362 -7.3456 0.7289 18 6 0.6448 -7.1220 2.8256 19 8 0.6804 -8.5181 3.1919 20 6 2.0570 -8.9292 3.1446 21 1 2.5098 -8.8225 4.1302 22 6 2.1494 -10.3857 2.6848 23 6 0.8601 -11.0605 2.2124 24 6 1.4766 -11.4463 3.5586 25 6 2.7751 -8.0117 2.1351 26 6 2.2298 -3.6980 0.0652 27 1 -0.4850 -0.8401 -0.0004 28 1 0.9752 -2.2559 2.1532 29 1 -0.5404 -2.1600 1.2025 30 1 -0.7206 -4.4814 1.0309 31 1 0.2966 -4.4684 2.4988 32 1 2.2902 -5.2279 2.4700 33 1 0.9475 -6.4969 3.6657 34 1 -0.3491 -6.8421 2.4762 35 1 3.0760 -10.6619 2.1817 36 1 -0.0540 -10.4671 2.2296 37 1 0.9383 -11.7809 1.3982 38 1 1.9603 -12.4204 3.6298 39 1 0.9678 -11.1064 4.4606 40 1 3.1474 -8.5909 1.2900 41 1 3.5906 -7.4754 2.6201 42 1 2.5781 -3.9603 -0.9338 43 1 3.0744 -3.4663 0.7141 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597137646.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:50:52 Heat of formation + Delta-G solvation = -53.595214 kcal Electronic energy + Delta-G solvation = -20463.367260 eV Core-core repulsion = 17507.484091 eV Total energy + Delta-G solvation = -2955.883170 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.04526 -39.46403 -37.42415 -35.89581 -34.04782 -31.62525 -29.89349 -29.45777 -27.18872 -25.63210 -24.47222 -23.18430 -22.19924 -21.36103 -21.24262 -20.93830 -18.91105 -17.54661 -17.34796 -16.74678 -16.45726 -15.82299 -15.64875 -15.57887 -15.06198 -14.69407 -14.41828 -14.16492 -14.04957 -13.64830 -13.34882 -12.88701 -12.74558 -12.53690 -12.45915 -12.30637 -12.19094 -11.96909 -11.84889 -11.83868 -11.60905 -11.54668 -11.24735 -11.18689 -10.96687 -10.60874 -10.50281 -10.43394 -9.34866 -8.53915 -6.27356 1.53525 1.61033 1.80088 2.59226 2.69417 2.88093 3.23151 3.28758 3.58491 3.70943 3.83433 3.88099 3.97034 4.03058 4.06964 4.11764 4.16652 4.34757 4.49285 4.59150 4.64064 4.65207 4.68691 4.77895 4.82500 4.85812 4.92001 4.99723 5.01982 5.04109 5.05708 5.16122 5.20505 5.24168 5.30000 5.34998 5.52367 5.71516 5.87988 6.14024 6.17904 6.28935 6.39604 6.71970 7.52417 8.83776 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.057102 B = 0.003370 C = 0.003300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 490.234054 B = 8305.522025 C = 8483.944311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C -0.032 4.032 3 Si 1.110 2.890 4 H -0.286 1.286 5 H -0.273 1.273 6 H -0.272 1.272 7 C -0.606 4.606 8 H 0.043 0.957 9 C 0.019 3.981 10 H -0.007 1.007 11 C -0.106 4.106 12 C -0.139 4.139 13 C 0.097 3.903 14 H 0.078 0.922 15 N -0.666 5.666 16 C 0.061 3.939 17 H 0.088 0.912 18 C 0.021 3.979 19 O -0.385 6.385 20 C 0.101 3.899 21 H 0.074 0.926 22 C -0.162 4.162 23 C -0.173 4.173 24 C -0.174 4.174 25 C -0.131 4.131 26 C -0.086 4.086 27 H 0.262 0.738 28 H 0.037 0.963 29 H 0.030 0.970 30 H 0.061 0.939 31 H 0.071 0.929 32 H 0.346 0.654 33 H 0.064 0.936 34 H 0.089 0.911 35 H 0.128 0.872 36 H 0.087 0.913 37 H 0.102 0.898 38 H 0.108 0.892 39 H 0.086 0.914 40 H 0.087 0.913 41 H 0.086 0.914 42 H 0.047 0.953 43 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.094 -20.721 6.572 22.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.230 4.230 3 Si 0.933 3.067 4 H -0.212 1.212 5 H -0.198 1.198 6 H -0.197 1.197 7 C -0.644 4.644 8 H 0.061 0.939 9 C 0.000 4.000 10 H 0.011 0.989 11 C -0.145 4.145 12 C -0.179 4.179 13 C -0.013 4.013 14 H 0.096 0.904 15 N -0.298 5.298 16 C -0.050 4.050 17 H 0.106 0.894 18 C -0.057 4.057 19 O -0.304 6.304 20 C 0.044 3.956 21 H 0.092 0.908 22 C -0.180 4.180 23 C -0.210 4.210 24 C -0.210 4.210 25 C -0.169 4.169 26 C -0.124 4.124 27 H 0.074 0.926 28 H 0.056 0.944 29 H 0.049 0.951 30 H 0.080 0.920 31 H 0.090 0.910 32 H 0.166 0.834 33 H 0.082 0.918 34 H 0.108 0.892 35 H 0.146 0.854 36 H 0.105 0.895 37 H 0.120 0.880 38 H 0.127 0.873 39 H 0.104 0.896 40 H 0.106 0.894 41 H 0.104 0.896 42 H 0.066 0.934 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 4.193 -19.415 6.145 20.791 hybrid contribution -0.809 -0.986 0.380 1.330 sum 3.384 -20.401 6.525 21.685 Atomic orbital electron populations 1.70908 1.07792 1.30554 1.48744 1.27148 0.96687 1.06180 0.93027 0.83017 0.74180 0.71777 0.77763 1.21156 1.19831 1.19715 1.22360 0.94061 0.93210 1.54747 0.93893 1.19765 0.93782 0.93997 0.92440 0.98870 1.22335 0.98453 0.94667 0.98995 1.22918 0.99242 0.95618 1.00079 1.22144 0.91180 0.93476 0.94509 0.90355 1.60606 1.51049 1.01785 1.16314 1.23181 0.93796 0.89506 0.98517 0.89412 1.24382 1.01284 0.83193 0.96872 1.88841 1.26229 1.25034 1.90268 1.22320 0.81967 0.93005 0.98347 0.90787 1.22612 0.98405 0.91623 1.05402 1.22860 0.96977 1.02950 0.98205 1.22982 1.03903 0.99508 0.94656 1.22902 0.98140 0.96344 0.99511 1.22164 0.97749 0.93517 0.99015 0.92638 0.94366 0.95083 0.92004 0.91036 0.83384 0.91807 0.89239 0.85413 0.89486 0.87986 0.87349 0.89578 0.89411 0.89570 0.93423 0.92532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.61 13.45 21.45 0.29 -57.33 16 2 C -0.03 -1.86 5.35 84.65 0.45 -1.41 16 3 Si 1.11 50.68 29.90 68.60 2.05 52.73 16 4 H -0.29 -13.09 7.11 99.48 0.71 -12.39 16 5 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 6 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 7 C -0.61 -34.28 8.52 25.60 0.22 -34.06 16 8 H 0.04 2.41 7.78 -2.91 -0.02 2.39 16 9 C 0.02 0.95 2.40 -10.25 -0.02 0.92 16 10 H -0.01 -0.37 8.00 -2.39 -0.02 -0.39 16 11 C -0.11 -4.81 5.62 31.74 0.18 -4.63 16 12 C -0.14 -4.70 6.07 31.39 0.19 -4.51 16 13 C 0.10 3.11 3.23 45.64 0.15 3.26 16 14 H 0.08 2.41 7.47 -2.39 -0.02 2.39 16 15 N -0.67 -17.62 6.06 -459.18 -2.78 -20.40 16 16 C 0.06 1.35 3.42 46.21 0.16 1.51 16 17 H 0.09 2.05 7.50 -2.39 -0.02 2.03 16 18 C 0.02 0.46 6.12 72.66 0.45 0.91 16 19 O -0.39 -8.90 9.58 -148.98 -1.43 -10.32 16 20 C 0.10 1.91 3.78 30.99 0.12 2.02 16 21 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 22 C -0.16 -2.65 5.55 -10.79 -0.06 -2.71 16 23 C -0.17 -2.98 9.88 30.59 0.30 -2.67 16 24 C -0.17 -2.69 10.21 30.60 0.31 -2.38 16 25 C -0.13 -2.45 6.39 31.61 0.20 -2.25 16 26 C -0.09 -3.51 5.95 31.67 0.19 -3.32 16 27 H 0.26 16.03 5.40 -92.71 -0.50 15.53 16 28 H 0.04 1.81 8.04 -2.39 -0.02 1.79 16 29 H 0.03 1.52 6.47 -2.38 -0.02 1.51 16 30 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 31 H 0.07 2.09 6.77 -2.39 -0.02 2.08 16 32 H 0.35 8.93 7.68 -89.69 -0.69 8.25 16 33 H 0.06 1.36 7.79 -2.38 -0.02 1.34 16 34 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 35 H 0.13 1.69 7.99 -2.39 -0.02 1.67 16 36 H 0.09 1.82 7.06 -2.39 -0.02 1.80 16 37 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 38 H 0.11 1.29 8.14 -2.39 -0.02 1.28 16 39 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 40 H 0.09 1.53 7.61 -2.39 -0.02 1.51 16 41 H 0.09 1.59 8.06 -2.39 -0.02 1.57 16 42 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 43 H 0.06 2.37 7.95 -2.38 -0.02 2.35 16 Total: -1.00 -63.23 331.37 1.52 -61.71 By element: Atomic # 1 Polarization: 22.37 SS G_CDS: 0.56 Total: 22.92 kcal Atomic # 6 Polarization: -52.15 SS G_CDS: 2.83 Total: -49.32 kcal Atomic # 7 Polarization: -75.24 SS G_CDS: -2.49 Total: -77.73 kcal Atomic # 8 Polarization: -8.90 SS G_CDS: -1.43 Total: -10.32 kcal Atomic # 14 Polarization: 50.68 SS G_CDS: 2.05 Total: 52.73 kcal Total: -63.23 1.52 -61.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597137646.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.115 kcal (2) G-P(sol) polarization free energy of solvation -63.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds