Wall clock time and date at job start Mon Mar 30 2020 07:50:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 120.00047 * 2 1 4 4 H 1.48501 * 109.47368 * 270.00755 * 3 2 1 5 5 H 1.48505 * 109.46779 * 30.00762 * 3 2 1 6 6 H 1.48498 * 109.46763 * 150.00402 * 3 2 1 7 7 C 1.37879 * 119.99930 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99721 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99889 * 359.97438 * 7 2 1 10 10 H 1.08996 * 110.43373 * 57.46266 * 9 7 2 11 11 C 1.54266 * 110.48515 * 294.77685 * 9 7 2 12 12 C 1.54090 * 106.61939 * 217.60513 * 11 9 7 13 13 C 1.54263 * 106.49248 * 0.16880 * 12 11 9 14 14 H 1.08998 * 110.48680 * 264.70791 * 13 12 11 15 15 N 1.46904 * 110.48275 * 142.19959 * 13 12 11 16 16 C 1.46901 * 110.99850 * 88.24319 * 15 13 12 17 17 H 1.08997 * 110.75101 * 31.52739 * 16 15 13 18 18 C 1.54382 * 111.02117 * 267.92764 * 16 15 13 19 19 O 1.43237 * 107.59016 * 220.37366 * 18 16 15 20 20 C 1.43646 * 109.97033 * 358.29496 * 19 18 16 21 21 H 1.09006 * 110.30867 * 265.50652 * 20 19 18 22 22 C 1.53002 * 110.31012 * 143.34138 * 20 19 18 23 23 C 1.52999 * 117.49872 * 133.03184 * 22 20 19 24 24 C 1.53001 * 117.49748 * 64.37434 * 22 20 19 25 25 C 1.54947 * 105.13731 * 24.42410 * 20 19 18 26 26 C 1.54884 * 110.48335 * 179.97438 * 9 7 2 27 27 H 0.97003 * 119.99496 * 359.97438 * 1 2 3 28 28 H 1.09004 * 110.03240 * 336.99413 * 11 9 7 29 29 H 1.08993 * 110.03266 * 98.42981 * 11 9 7 30 30 H 1.08999 * 110.15499 * 240.88139 * 12 11 9 31 31 H 1.08998 * 110.00574 * 119.38245 * 12 11 9 32 32 H 1.00897 * 111.00270 * 324.28465 * 15 13 12 33 33 H 1.09001 * 109.83043 * 339.89370 * 18 16 15 34 34 H 1.09003 * 109.82718 * 100.86082 * 18 16 15 35 35 H 1.08995 * 115.54702 * 278.69842 * 22 20 19 36 36 H 1.09000 * 117.50069 * 0.02562 * 23 22 20 37 37 H 1.09001 * 117.49952 * 145.01597 * 23 22 20 38 38 H 1.09001 * 117.49270 * 214.98100 * 24 22 20 39 39 H 1.08993 * 117.49921 * 359.97438 * 24 22 20 40 40 H 1.09003 * 111.12327 * 205.63595 * 25 20 19 41 41 H 1.08996 * 111.12316 * 81.47686 * 25 20 19 42 42 H 1.09001 * 110.75846 * 38.31029 * 26 9 7 43 43 H 1.08992 * 110.76101 * 274.93481 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0466 -1.4001 5 1 1.4467 2.6526 0.7002 6 1 3.5468 1.4400 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.5847 -2.5538 -0.8614 11 6 0.4571 -2.6642 1.3118 12 6 0.5394 -4.1551 1.6922 13 6 1.3844 -4.8402 0.5984 14 1 0.7397 -5.2757 -0.1649 15 7 2.2501 -5.8705 1.1875 16 6 1.5567 -7.1637 1.2575 17 1 0.8511 -7.2686 0.4334 18 6 0.8447 -7.3374 2.6162 19 8 1.0324 -8.6949 3.0328 20 6 1.7720 -9.4165 2.0350 21 1 1.0906 -9.9339 1.3594 22 6 2.7239 -10.4144 2.6976 23 6 2.7492 -11.8407 2.1445 24 6 2.1013 -11.5573 3.5021 25 6 2.5745 -8.3367 1.2664 26 6 2.2365 -3.6940 -0.0018 27 1 -0.4849 0.8401 0.0004 28 1 0.9016 -2.0521 2.0966 29 1 -0.5829 -2.3769 1.1576 30 1 -0.4592 -4.5912 1.7204 31 1 1.0234 -4.2663 2.6625 32 1 2.5808 -5.5877 2.0978 33 1 1.2809 -6.6612 3.3514 34 1 -0.2194 -7.1284 2.5054 35 1 3.6640 -9.9981 3.0593 36 1 2.0880 -12.0681 1.3083 37 1 3.7059 -12.3629 2.1427 38 1 2.6321 -11.8931 4.3929 39 1 1.0136 -11.5980 3.5596 40 1 2.8043 -8.6652 0.2528 41 1 3.4826 -8.0649 1.8046 42 1 3.0998 -3.4835 0.6295 43 1 2.5492 -3.9359 -1.0176 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597137647.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:50:57 Heat of formation + Delta-G solvation = -36.751551 kcal Electronic energy + Delta-G solvation = -20235.381376 eV Core-core repulsion = 17280.228602 eV Total energy + Delta-G solvation = -2955.152773 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.96013 -37.82190 -36.72936 -34.28170 -32.22809 -30.50866 -28.45221 -28.04734 -25.83166 -23.76625 -23.24995 -22.60402 -21.29384 -20.37913 -19.65304 -19.02301 -16.98899 -16.46848 -16.05199 -15.40050 -15.12132 -14.68875 -14.59185 -14.13523 -13.93425 -13.47419 -12.67262 -12.63627 -12.35016 -12.14707 -12.10655 -11.78817 -11.59259 -11.49729 -11.10576 -11.01040 -10.94010 -10.66700 -10.54796 -10.49002 -10.28360 -10.07653 -9.86759 -9.62169 -9.52719 -9.09676 -8.72116 -8.36069 -8.06851 -5.98692 -4.00871 3.29352 3.31983 3.38762 3.42089 3.96498 4.15737 4.45676 4.50465 4.58940 4.69423 4.78424 4.86968 5.04403 5.14544 5.29570 5.30950 5.35017 5.39175 5.53979 5.61060 5.66017 5.68846 5.70905 5.83607 5.86881 5.92917 5.96588 6.07547 6.20948 6.45678 6.62637 6.72102 6.83186 6.93906 7.02386 7.13418 7.34694 7.46634 7.61801 7.72191 7.92235 8.04993 8.49878 9.02703 9.63115 11.11226 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.057949 B = 0.003215 C = 0.003142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 483.068728 B = 8705.946733 C = 8910.275757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.061 3.939 3 Si 0.888 3.112 4 H -0.281 1.281 5 H -0.288 1.288 6 H -0.274 1.274 7 C -0.511 4.511 8 H 0.055 0.945 9 C 0.047 3.953 10 H 0.029 0.971 11 C -0.095 4.095 12 C -0.153 4.153 13 C 0.078 3.922 14 H 0.072 0.928 15 N -0.668 5.668 16 C 0.056 3.944 17 H 0.090 0.910 18 C 0.025 3.975 19 O -0.377 6.377 20 C 0.107 3.893 21 H 0.069 0.931 22 C -0.153 4.153 23 C -0.175 4.175 24 C -0.170 4.170 25 C -0.135 4.135 26 C -0.099 4.099 27 H 0.259 0.741 28 H 0.050 0.950 29 H 0.052 0.948 30 H 0.044 0.956 31 H 0.048 0.952 32 H 0.342 0.658 33 H 0.069 0.931 34 H 0.067 0.933 35 H 0.108 0.892 36 H 0.095 0.905 37 H 0.096 0.904 38 H 0.093 0.907 39 H 0.096 0.904 40 H 0.084 0.916 41 H 0.083 0.917 42 H 0.059 0.941 43 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.982 -19.884 4.383 20.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.141 4.141 3 Si 0.716 3.284 4 H -0.207 1.207 5 H -0.214 1.214 6 H -0.199 1.199 7 C -0.549 4.549 8 H 0.074 0.926 9 C 0.028 3.972 10 H 0.047 0.953 11 C -0.133 4.133 12 C -0.192 4.192 13 C -0.031 4.031 14 H 0.091 0.909 15 N -0.298 5.298 16 C -0.055 4.055 17 H 0.108 0.892 18 C -0.054 4.054 19 O -0.296 6.296 20 C 0.050 3.950 21 H 0.086 0.914 22 C -0.171 4.171 23 C -0.212 4.212 24 C -0.207 4.207 25 C -0.173 4.173 26 C -0.138 4.138 27 H 0.068 0.932 28 H 0.069 0.931 29 H 0.071 0.929 30 H 0.063 0.937 31 H 0.066 0.934 32 H 0.162 0.838 33 H 0.087 0.913 34 H 0.085 0.915 35 H 0.126 0.874 36 H 0.113 0.887 37 H 0.115 0.885 38 H 0.112 0.888 39 H 0.114 0.886 40 H 0.102 0.898 41 H 0.102 0.898 42 H 0.077 0.923 43 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 3.072 -19.987 3.982 20.610 hybrid contribution -0.255 1.298 0.657 1.477 sum 2.818 -18.689 4.639 19.461 Atomic orbital electron populations 1.69975 1.05887 1.26364 1.50766 1.24995 0.94828 0.99019 0.95227 0.86656 0.79920 0.83725 0.78061 1.20743 1.21357 1.19932 1.21168 0.92819 0.90501 1.50442 0.92644 1.19451 0.92558 0.91758 0.93424 0.95265 1.22080 1.00876 0.90403 0.99980 1.23016 0.98579 1.00017 0.97586 1.22698 0.93278 0.91333 0.95774 0.90935 1.60690 1.38279 1.01705 1.29119 1.23198 0.94600 0.91319 0.96406 0.89216 1.23998 1.00780 0.83819 0.96761 1.88416 1.75300 1.21838 1.44066 1.22480 0.91417 0.92362 0.88751 0.91353 1.22362 1.00592 0.89534 1.04628 1.22984 1.02867 0.97594 0.97745 1.22853 1.00760 1.02242 0.94822 1.23245 0.98939 0.93696 1.01448 1.22542 0.98488 0.94080 0.98650 0.93161 0.93077 0.92938 0.93726 0.93374 0.83794 0.91294 0.91492 0.87383 0.88699 0.88532 0.88838 0.88567 0.89751 0.89842 0.92270 0.93281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.72 12.63 55.43 0.70 -25.02 16 2 C 0.06 1.69 5.35 -17.82 -0.10 1.59 16 3 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.27 -6.51 7.11 56.52 0.40 -6.10 16 7 C -0.51 -13.99 8.36 -34.44 -0.29 -14.28 16 8 H 0.06 1.51 7.77 -52.49 -0.41 1.10 16 9 C 0.05 1.15 2.72 -90.11 -0.25 0.91 16 10 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 11 C -0.09 -2.17 5.61 -25.50 -0.14 -2.31 16 12 C -0.15 -2.74 6.15 -25.50 -0.16 -2.89 16 13 C 0.08 1.33 3.16 -66.04 -0.21 1.13 16 14 H 0.07 1.23 7.48 -51.93 -0.39 0.84 16 15 N -0.67 -9.60 6.25 -95.96 -0.60 -10.20 16 16 C 0.06 0.70 3.31 -65.76 -0.22 0.48 16 17 H 0.09 1.12 7.47 -51.93 -0.39 0.73 16 18 C 0.02 0.31 7.17 37.88 0.27 0.58 16 19 O -0.38 -4.95 11.02 -35.23 -0.39 -5.34 16 20 C 0.11 1.15 3.60 -25.70 -0.09 1.06 16 21 H 0.07 0.70 7.97 -51.93 -0.41 0.28 16 22 C -0.15 -1.44 5.45 -90.62 -0.49 -1.94 16 23 C -0.17 -1.34 10.19 -26.70 -0.27 -1.62 16 24 C -0.17 -1.47 10.24 -26.69 -0.27 -1.75 16 25 C -0.14 -1.46 6.26 -24.48 -0.15 -1.61 16 26 C -0.10 -2.03 5.97 -24.73 -0.15 -2.17 16 27 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 28 H 0.05 1.25 7.83 -51.93 -0.41 0.84 16 29 H 0.05 1.29 8.06 -51.93 -0.42 0.87 16 30 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.05 0.80 7.55 -51.93 -0.39 0.41 16 32 H 0.34 4.82 7.43 -39.29 -0.29 4.52 16 33 H 0.07 0.88 7.50 -51.93 -0.39 0.49 16 34 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.11 1.01 8.00 -51.93 -0.42 0.59 16 36 H 0.09 0.68 8.09 -51.93 -0.42 0.26 16 37 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.10 0.88 8.14 -51.93 -0.42 0.45 16 40 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.08 0.92 7.95 -51.93 -0.41 0.51 16 42 H 0.06 1.23 8.05 -51.93 -0.42 0.81 16 43 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 338.88 15.07 5.11 5.11 Total: -1.00 -28.34 338.88 -10.40 -38.73 By element: Atomic # 1 Polarization: 10.89 SS G_CDS: -7.68 Total: 3.21 kcal Atomic # 6 Polarization: -20.30 SS G_CDS: -2.52 Total: -22.82 kcal Atomic # 7 Polarization: -35.32 SS G_CDS: 0.10 Total: -35.22 kcal Atomic # 8 Polarization: -4.95 SS G_CDS: -0.39 Total: -5.34 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -28.34 -10.40 -38.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597137647.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.981 kcal (2) G-P(sol) polarization free energy of solvation -28.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds