Wall clock time and date at job start Mon Mar 30 2020 07:50:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 120.00047 * 2 1 4 4 H 1.48501 * 109.47368 * 270.00755 * 3 2 1 5 5 H 1.48505 * 109.46779 * 30.00762 * 3 2 1 6 6 H 1.48498 * 109.46763 * 150.00402 * 3 2 1 7 7 C 1.37879 * 119.99930 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99721 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99889 * 359.97438 * 7 2 1 10 10 H 1.08996 * 110.43373 * 57.46266 * 9 7 2 11 11 C 1.54266 * 110.48515 * 294.77685 * 9 7 2 12 12 C 1.54090 * 106.61939 * 217.60513 * 11 9 7 13 13 C 1.54263 * 106.49248 * 0.16880 * 12 11 9 14 14 H 1.08998 * 110.48680 * 264.70791 * 13 12 11 15 15 N 1.46904 * 110.48275 * 142.19959 * 13 12 11 16 16 C 1.46901 * 110.99850 * 88.24319 * 15 13 12 17 17 H 1.08997 * 110.75101 * 31.52739 * 16 15 13 18 18 C 1.54382 * 111.02117 * 267.92764 * 16 15 13 19 19 O 1.43237 * 107.59016 * 220.37366 * 18 16 15 20 20 C 1.43646 * 109.97033 * 358.29496 * 19 18 16 21 21 H 1.09006 * 110.30867 * 265.50652 * 20 19 18 22 22 C 1.53002 * 110.31012 * 143.34138 * 20 19 18 23 23 C 1.52999 * 117.49872 * 133.03184 * 22 20 19 24 24 C 1.53001 * 117.49748 * 64.37434 * 22 20 19 25 25 C 1.54947 * 105.13731 * 24.42410 * 20 19 18 26 26 C 1.54884 * 110.48335 * 179.97438 * 9 7 2 27 27 H 0.97003 * 119.99496 * 359.97438 * 1 2 3 28 28 H 1.09004 * 110.03240 * 336.99413 * 11 9 7 29 29 H 1.08993 * 110.03266 * 98.42981 * 11 9 7 30 30 H 1.08999 * 110.15499 * 240.88139 * 12 11 9 31 31 H 1.08998 * 110.00574 * 119.38245 * 12 11 9 32 32 H 1.00897 * 111.00270 * 324.28465 * 15 13 12 33 33 H 1.09001 * 109.83043 * 339.89370 * 18 16 15 34 34 H 1.09003 * 109.82718 * 100.86082 * 18 16 15 35 35 H 1.08995 * 115.54702 * 278.69842 * 22 20 19 36 36 H 1.09000 * 117.50069 * 0.02562 * 23 22 20 37 37 H 1.09001 * 117.49952 * 145.01597 * 23 22 20 38 38 H 1.09001 * 117.49270 * 214.98100 * 24 22 20 39 39 H 1.08993 * 117.49921 * 359.97438 * 24 22 20 40 40 H 1.09003 * 111.12327 * 205.63595 * 25 20 19 41 41 H 1.08996 * 111.12316 * 81.47686 * 25 20 19 42 42 H 1.09001 * 110.75846 * 38.31029 * 26 9 7 43 43 H 1.08992 * 110.76101 * 274.93481 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0466 -1.4001 5 1 1.4467 2.6526 0.7002 6 1 3.5468 1.4400 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.5847 -2.5538 -0.8614 11 6 0.4571 -2.6642 1.3118 12 6 0.5394 -4.1551 1.6922 13 6 1.3844 -4.8402 0.5984 14 1 0.7397 -5.2757 -0.1649 15 7 2.2501 -5.8705 1.1875 16 6 1.5567 -7.1637 1.2575 17 1 0.8511 -7.2686 0.4334 18 6 0.8447 -7.3374 2.6162 19 8 1.0324 -8.6949 3.0328 20 6 1.7720 -9.4165 2.0350 21 1 1.0906 -9.9339 1.3594 22 6 2.7239 -10.4144 2.6976 23 6 2.7492 -11.8407 2.1445 24 6 2.1013 -11.5573 3.5021 25 6 2.5745 -8.3367 1.2664 26 6 2.2365 -3.6940 -0.0018 27 1 -0.4849 0.8401 0.0004 28 1 0.9016 -2.0521 2.0966 29 1 -0.5829 -2.3769 1.1576 30 1 -0.4592 -4.5912 1.7204 31 1 1.0234 -4.2663 2.6625 32 1 2.5808 -5.5877 2.0978 33 1 1.2809 -6.6612 3.3514 34 1 -0.2194 -7.1284 2.5054 35 1 3.6640 -9.9981 3.0593 36 1 2.0880 -12.0681 1.3083 37 1 3.7059 -12.3629 2.1427 38 1 2.6321 -11.8931 4.3929 39 1 1.0136 -11.5980 3.5596 40 1 2.8043 -8.6652 0.2528 41 1 3.4826 -8.0649 1.8046 42 1 3.0998 -3.4835 0.6295 43 1 2.5492 -3.9359 -1.0176 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597137647.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:50:57 Heat of formation + Delta-G solvation = -52.863318 kcal Electronic energy + Delta-G solvation = -20236.080034 eV Core-core repulsion = 17280.228602 eV Total energy + Delta-G solvation = -2955.851432 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.91240 -39.23083 -37.57218 -35.72585 -34.05820 -31.61114 -29.80411 -29.60862 -27.41925 -25.45570 -24.24995 -23.22729 -22.25665 -21.23862 -21.06936 -20.89508 -18.42393 -17.80977 -17.17527 -16.60831 -16.41854 -16.19382 -15.82523 -15.41778 -14.95967 -14.61306 -14.31891 -14.06912 -13.68556 -13.49420 -13.25194 -12.98305 -12.88080 -12.68279 -12.39077 -12.37599 -12.32260 -12.19389 -11.91001 -11.76829 -11.57381 -11.35887 -11.20077 -11.06528 -10.83834 -10.75518 -10.51481 -10.47348 -9.29282 -8.11692 -6.20731 1.40790 1.41435 1.51693 2.43630 2.51292 3.10484 3.19749 3.26393 3.58187 3.71223 3.86427 3.96953 4.06607 4.08879 4.12488 4.16905 4.27168 4.34571 4.50365 4.53228 4.69065 4.74306 4.76580 4.81336 4.87939 5.01467 5.02689 5.04664 5.07398 5.12377 5.19421 5.24996 5.27521 5.31466 5.44430 5.46025 5.66468 5.93017 5.99530 6.04183 6.17312 6.39792 6.46898 6.91397 7.46729 8.97496 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.057949 B = 0.003215 C = 0.003142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 483.068728 B = 8705.946733 C = 8910.275757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.009 3.991 3 Si 0.952 3.048 4 H -0.276 1.276 5 H -0.285 1.285 6 H -0.267 1.267 7 C -0.529 4.529 8 H 0.053 0.947 9 C 0.037 3.963 10 H -0.002 1.002 11 C -0.087 4.087 12 C -0.140 4.140 13 C 0.095 3.905 14 H 0.079 0.921 15 N -0.664 5.664 16 C 0.057 3.943 17 H 0.093 0.907 18 C 0.027 3.973 19 O -0.394 6.394 20 C 0.106 3.894 21 H 0.075 0.925 22 C -0.167 4.167 23 C -0.159 4.159 24 C -0.177 4.177 25 C -0.127 4.127 26 C -0.091 4.091 27 H 0.259 0.741 28 H 0.027 0.973 29 H 0.025 0.975 30 H 0.060 0.940 31 H 0.064 0.936 32 H 0.346 0.654 33 H 0.067 0.933 34 H 0.066 0.934 35 H 0.108 0.892 36 H 0.101 0.899 37 H 0.111 0.889 38 H 0.101 0.899 39 H 0.089 0.911 40 H 0.095 0.905 41 H 0.081 0.919 42 H 0.055 0.945 43 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.042 -21.442 4.611 22.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.189 4.189 3 Si 0.777 3.223 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.192 1.192 7 C -0.567 4.567 8 H 0.071 0.929 9 C 0.018 3.982 10 H 0.016 0.984 11 C -0.126 4.126 12 C -0.179 4.179 13 C -0.015 4.015 14 H 0.097 0.903 15 N -0.294 5.294 16 C -0.054 4.054 17 H 0.111 0.889 18 C -0.052 4.052 19 O -0.314 6.314 20 C 0.049 3.951 21 H 0.093 0.907 22 C -0.186 4.186 23 C -0.196 4.196 24 C -0.214 4.214 25 C -0.165 4.165 26 C -0.129 4.129 27 H 0.068 0.932 28 H 0.046 0.954 29 H 0.044 0.956 30 H 0.078 0.922 31 H 0.083 0.917 32 H 0.167 0.833 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.126 0.874 36 H 0.120 0.880 37 H 0.129 0.871 38 H 0.119 0.881 39 H 0.107 0.893 40 H 0.114 0.886 41 H 0.100 0.900 42 H 0.073 0.927 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 4.147 -21.565 4.212 22.361 hybrid contribution -0.590 1.751 0.579 1.936 sum 3.557 -19.814 4.791 20.693 Atomic orbital electron populations 1.70101 1.07264 1.27092 1.51711 1.25780 0.95653 1.02459 0.95013 0.85652 0.78812 0.79560 0.78231 1.20147 1.21085 1.19160 1.21561 0.92969 0.92086 1.50103 0.92904 1.19445 0.93121 0.92726 0.92921 0.98396 1.21863 0.98529 0.93699 0.98471 1.22898 1.00054 0.96268 0.98677 1.22399 0.92595 0.91007 0.95487 0.90301 1.60597 1.37699 1.01689 1.29427 1.23231 0.95125 0.90544 0.96506 0.88912 1.23942 1.00736 0.83840 0.96633 1.88406 1.75817 1.22063 1.45095 1.22599 0.91550 0.92401 0.88518 0.90723 1.22368 1.00412 0.90039 1.05756 1.23078 1.03453 0.95905 0.97193 1.22904 1.00510 1.02087 0.95865 1.23195 0.98324 0.92863 1.02120 1.22361 0.97690 0.93736 0.99089 0.93214 0.95365 0.95601 0.92167 0.91724 0.83346 0.91504 0.91541 0.87423 0.88013 0.87114 0.88078 0.89295 0.88619 0.90030 0.92652 0.93121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.52 12.63 21.45 0.27 -54.25 16 2 C 0.01 0.52 5.35 84.65 0.45 0.98 16 3 Si 0.95 44.19 29.54 68.60 2.03 46.21 16 4 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 5 H -0.29 -13.03 7.11 99.48 0.71 -12.33 16 6 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 7 C -0.53 -29.47 8.36 25.60 0.21 -29.26 16 8 H 0.05 2.89 7.77 -2.91 -0.02 2.87 16 9 C 0.04 1.85 2.72 -10.47 -0.03 1.82 16 10 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 11 C -0.09 -4.05 5.61 31.39 0.18 -3.88 16 12 C -0.14 -4.84 6.15 31.39 0.19 -4.65 16 13 C 0.10 3.09 3.16 46.00 0.15 3.23 16 14 H 0.08 2.51 7.48 -2.39 -0.02 2.50 16 15 N -0.66 -17.62 6.25 -457.52 -2.86 -20.47 16 16 C 0.06 1.28 3.31 46.18 0.15 1.43 16 17 H 0.09 2.07 7.47 -2.39 -0.02 2.05 16 18 C 0.03 0.63 7.17 72.45 0.52 1.14 16 19 O -0.39 -9.69 11.02 -148.98 -1.64 -11.34 16 20 C 0.11 2.06 3.60 31.26 0.11 2.17 16 21 H 0.07 1.35 7.97 -2.38 -0.02 1.33 16 22 C -0.17 -2.82 5.45 -10.79 -0.06 -2.88 16 23 C -0.16 -2.04 10.19 30.62 0.31 -1.73 16 24 C -0.18 -2.75 10.24 30.62 0.31 -2.44 16 25 C -0.13 -2.43 6.26 32.05 0.20 -2.23 16 26 C -0.09 -3.65 5.97 31.89 0.19 -3.46 16 27 H 0.26 14.59 8.31 -92.71 -0.77 13.82 16 28 H 0.03 1.40 7.83 -2.38 -0.02 1.38 16 29 H 0.03 1.30 8.06 -2.39 -0.02 1.28 16 30 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 31 H 0.06 2.04 7.55 -2.39 -0.02 2.02 16 32 H 0.35 8.94 7.43 -89.70 -0.67 8.28 16 33 H 0.07 1.57 7.50 -2.39 -0.02 1.55 16 34 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.11 1.81 8.00 -2.39 -0.02 1.79 16 36 H 0.10 1.17 8.09 -2.39 -0.02 1.15 16 37 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 39 H 0.09 1.50 8.14 -2.39 -0.02 1.49 16 40 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 41 H 0.08 1.62 7.95 -2.39 -0.02 1.60 16 42 H 0.05 2.26 8.05 -2.39 -0.02 2.24 16 43 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 Total: -1.00 -61.29 338.88 0.99 -60.30 By element: Atomic # 1 Polarization: 19.00 SS G_CDS: 0.30 Total: 19.30 kcal Atomic # 6 Polarization: -42.65 SS G_CDS: 2.90 Total: -39.75 kcal Atomic # 7 Polarization: -72.13 SS G_CDS: -2.59 Total: -74.72 kcal Atomic # 8 Polarization: -9.69 SS G_CDS: -1.64 Total: -11.34 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.21 kcal Total: -61.29 0.99 -60.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597137647.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.433 kcal (2) G-P(sol) polarization free energy of solvation -61.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds