Wall clock time and date at job start Mon Mar 30 2020 08:27:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53009 * 112.90139 * 2 1 4 4 C 1.53779 * 113.61500 * 131.24669 * 2 1 3 5 5 C 1.53777 * 87.07930 * 89.12342 * 4 2 1 6 6 C 1.53779 * 113.61737 * 228.74965 * 2 1 3 7 7 H 1.08998 * 113.61386 * 25.42809 * 6 2 1 8 8 C 1.50695 * 113.69104 * 156.32073 * 6 2 1 9 9 O 1.21283 * 119.99957 * 62.67782 * 8 6 2 10 10 N 1.34775 * 120.00242 * 242.68134 * 8 6 2 11 11 C 1.46502 * 120.00241 * 180.02562 * 10 8 6 12 12 C 1.50697 * 109.47371 * 89.99393 * 11 10 8 13 13 H 1.07999 * 120.00144 * 0.02562 * 12 11 10 14 14 C 1.37876 * 119.99800 * 179.97438 * 12 11 10 15 15 N 1.31515 * 120.00164 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 120.00003 * 180.02562 * 14 12 11 17 17 H 1.48504 * 109.47055 * 359.97438 * 16 14 12 18 18 H 1.48498 * 109.47264 * 119.99850 * 16 14 12 19 19 H 1.48500 * 109.47114 * 240.00216 * 16 14 12 20 20 C 1.46505 * 119.99897 * 359.97438 * 10 8 6 21 21 C 1.53002 * 109.46653 * 90.00665 * 20 10 8 22 22 C 1.53005 * 117.49379 * 243.62460 * 21 20 10 23 23 C 1.53005 * 117.49660 * 175.00416 * 21 20 10 24 24 H 1.08995 * 109.47243 * 308.25034 * 1 2 3 25 25 H 1.08994 * 109.47132 * 68.25629 * 1 2 3 26 26 H 1.09000 * 109.46450 * 188.25610 * 1 2 3 27 27 H 1.09005 * 109.46690 * 184.02980 * 3 2 1 28 28 H 1.08998 * 109.46864 * 304.02553 * 3 2 1 29 29 H 1.08998 * 109.47052 * 64.02965 * 3 2 1 30 30 H 1.08991 * 113.61620 * 334.57224 * 4 2 1 31 31 H 1.09004 * 113.61000 * 203.66300 * 4 2 1 32 32 H 1.09003 * 113.61949 * 139.98246 * 5 4 2 33 33 H 1.09003 * 113.61132 * 270.88402 * 5 4 2 34 34 H 1.09004 * 109.46651 * 209.99584 * 11 10 8 35 35 H 1.09001 * 109.46935 * 329.98931 * 11 10 8 36 36 H 0.97004 * 119.99629 * 180.02562 * 15 14 12 37 37 H 1.08996 * 109.47136 * 210.00290 * 20 10 8 38 38 H 1.09001 * 109.47012 * 330.01037 * 20 10 8 39 39 H 1.08993 * 115.55426 * 29.33162 * 21 20 10 40 40 H 1.08993 * 117.50443 * 359.97438 * 22 21 20 41 41 H 1.09001 * 117.49559 * 145.02616 * 22 21 20 42 42 H 1.08996 * 117.49680 * 214.97640 * 23 21 20 43 43 H 1.08995 * 117.49899 * 359.97311 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1255 1.4095 0.0000 4 6 2.1461 -0.9290 1.0594 5 6 2.0932 -2.0424 0.0001 6 6 2.1461 -0.9290 -1.0593 7 1 1.4946 -1.1086 -1.9145 8 6 3.5466 -0.5443 -1.4612 9 8 4.4393 -0.5610 -0.6403 10 7 3.8073 -0.1817 -2.7328 11 6 5.1689 0.1918 -3.1236 12 6 5.9127 -1.0342 -3.5869 13 1 5.4204 -1.9954 -3.5904 14 6 7.2216 -0.9285 -4.0074 15 7 7.8210 0.2420 -4.0037 16 14 8.1434 -2.4481 -4.5824 17 1 7.2521 -3.6323 -4.4899 18 1 8.5752 -2.2617 -5.9909 19 1 9.3359 -2.6585 -3.7228 20 6 2.7291 -0.1620 -3.7246 21 6 2.0717 1.2195 -3.7357 22 6 0.6009 1.3052 -3.3226 23 6 0.9948 1.4809 -4.7907 24 1 -0.3633 0.6362 0.8070 25 1 -0.3633 0.3807 -0.9545 26 1 -0.3632 -1.0171 0.1476 27 1 3.2112 1.3452 -0.0722 28 1 1.7371 1.9679 -0.8517 29 1 1.8523 1.9193 0.9239 30 1 1.4946 -1.1085 1.9145 31 1 3.1592 -0.6497 1.3489 32 1 2.9719 -2.6873 0.0001 33 1 1.1571 -2.6009 0.0001 34 1 5.1275 0.9196 -3.9340 35 1 5.6853 0.6288 -2.2689 36 1 8.7417 0.3163 -4.2999 37 1 3.1391 -0.3772 -4.7113 38 1 1.9854 -0.9163 -3.4676 39 1 2.7208 2.0513 -3.4623 40 1 0.1017 0.3775 -3.0434 41 1 0.2823 2.1936 -2.7773 42 1 0.9353 2.4848 -5.2110 43 1 0.7550 0.6689 -5.4770 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597141325.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:27:55 Heat of formation + Delta-G solvation = 1.369112 kcal Electronic energy + Delta-G solvation = -21631.232800 eV Core-core repulsion = 18677.733062 eV Total energy + Delta-G solvation = -2953.499737 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.53552 -37.80512 -36.85824 -34.28631 -32.49685 -30.54066 -28.26542 -27.30518 -26.61114 -25.41248 -22.83610 -22.33114 -22.03256 -20.64431 -19.27936 -17.39500 -16.57511 -16.42491 -15.32809 -15.00943 -14.89142 -14.50008 -14.16779 -14.02472 -13.76142 -13.24369 -12.69725 -12.65313 -12.27058 -12.15573 -11.97431 -11.79080 -11.47198 -11.36381 -11.23403 -11.16649 -10.87524 -10.83333 -10.66676 -10.57698 -10.28053 -10.06969 -9.88576 -9.80350 -9.67082 -9.54099 -8.66254 -8.41522 -7.60640 -6.02183 -4.06518 3.30823 3.37670 3.40285 3.44659 3.83636 4.07148 4.46513 4.65380 4.78545 4.90958 5.00091 5.06534 5.12064 5.22187 5.31897 5.39037 5.44376 5.56360 5.66726 5.70468 5.74887 5.81883 5.87871 5.96253 5.98322 5.99698 6.03172 6.14142 6.15540 6.22015 6.23541 6.30198 6.50824 6.52974 6.59760 6.76966 7.13375 7.48391 7.60742 7.95149 8.26788 8.50414 8.94219 9.19508 9.58842 11.05878 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.019361 B = 0.006635 C = 0.005541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1445.868060 B = 4219.260236 C = 5051.815241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.063 4.063 3 C -0.143 4.143 4 C -0.128 4.128 5 C -0.123 4.123 6 C -0.132 4.132 7 H 0.087 0.913 8 C 0.531 3.469 9 O -0.540 6.540 10 N -0.592 5.592 11 C 0.247 3.753 12 C -0.524 4.524 13 H 0.057 0.943 14 C 0.061 3.939 15 N -0.895 5.895 16 Si 0.897 3.103 17 H -0.274 1.274 18 H -0.284 1.284 19 H -0.283 1.283 20 C 0.141 3.859 21 C -0.161 4.161 22 C -0.180 4.180 23 C -0.179 4.179 24 H 0.057 0.943 25 H 0.060 0.940 26 H 0.055 0.945 27 H 0.068 0.932 28 H 0.055 0.945 29 H 0.050 0.950 30 H 0.059 0.941 31 H 0.095 0.905 32 H 0.072 0.928 33 H 0.079 0.921 34 H 0.031 0.969 35 H 0.042 0.958 36 H 0.262 0.738 37 H 0.084 0.916 38 H 0.069 0.931 39 H 0.106 0.894 40 H 0.092 0.908 41 H 0.089 0.911 42 H 0.090 0.910 43 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.061 0.908 3.405 17.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.064 4.064 3 C -0.200 4.200 4 C -0.166 4.166 5 C -0.161 4.161 6 C -0.154 4.154 7 H 0.105 0.895 8 C 0.318 3.682 9 O -0.418 6.418 10 N -0.323 5.323 11 C 0.127 3.873 12 C -0.563 4.563 13 H 0.075 0.925 14 C -0.141 4.141 15 N -0.534 5.534 16 Si 0.724 3.276 17 H -0.198 1.198 18 H -0.210 1.210 19 H -0.209 1.209 20 C 0.017 3.983 21 C -0.180 4.180 22 C -0.217 4.217 23 C -0.217 4.217 24 H 0.076 0.924 25 H 0.079 0.921 26 H 0.074 0.926 27 H 0.087 0.913 28 H 0.074 0.926 29 H 0.070 0.930 30 H 0.078 0.922 31 H 0.113 0.887 32 H 0.091 0.909 33 H 0.098 0.902 34 H 0.049 0.951 35 H 0.060 0.940 36 H 0.072 0.928 37 H 0.103 0.897 38 H 0.087 0.913 39 H 0.124 0.876 40 H 0.110 0.890 41 H 0.107 0.893 42 H 0.109 0.891 43 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -16.373 0.991 3.780 16.833 hybrid contribution 0.556 -0.740 -0.571 1.087 sum -15.817 0.252 3.209 16.141 Atomic orbital electron populations 1.21618 0.93280 1.01609 1.01918 1.21573 0.94728 0.94522 0.95564 1.21830 1.02118 0.95077 1.01002 1.23063 1.01962 0.95725 0.95819 1.22692 1.01855 0.96018 0.95550 1.22682 0.95838 0.98799 0.98044 0.89481 1.19651 0.88768 0.77380 0.82379 1.90635 1.47292 1.53361 1.50472 1.48147 1.10723 1.65498 1.07901 1.19258 0.75903 0.95837 0.96255 1.21481 0.97276 0.94557 1.42955 0.92476 1.24929 0.97293 0.96138 0.95752 1.69946 1.12667 1.23108 1.47707 0.86466 0.79854 0.83091 0.78153 1.19827 1.20982 1.20899 1.21046 0.89695 0.93394 0.94187 1.22900 0.91199 1.00422 1.03487 1.23034 0.98323 1.02755 0.97563 1.22910 1.04137 1.02579 0.92066 0.92427 0.92122 0.92590 0.91341 0.92631 0.93047 0.92236 0.88674 0.90879 0.90230 0.95092 0.93965 0.92829 0.89732 0.91313 0.87563 0.88987 0.89273 0.89112 0.88874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.31 9.07 37.16 0.34 -0.97 16 2 C -0.06 -0.85 1.34 -153.69 -0.21 -1.05 16 3 C -0.14 -2.08 8.72 37.16 0.32 -1.75 16 4 C -0.13 -1.83 6.78 -25.92 -0.18 -2.01 16 5 C -0.12 -1.78 7.12 -25.92 -0.18 -1.97 16 6 C -0.13 -2.06 3.38 -90.96 -0.31 -2.37 16 7 H 0.09 1.21 5.39 -51.93 -0.28 0.93 16 8 C 0.53 11.05 5.44 -10.99 -0.06 10.99 16 9 O -0.54 -13.44 14.00 5.55 0.08 -13.36 16 10 N -0.59 -12.56 2.46 -175.05 -0.43 -12.99 16 11 C 0.25 6.47 5.16 -5.19 -0.03 6.44 16 12 C -0.52 -14.97 9.39 -34.44 -0.32 -15.29 16 13 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 14 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 15 N -0.90 -26.80 13.29 55.43 0.74 -26.07 16 16 Si 0.90 22.07 29.54 -169.99 -5.02 17.05 16 17 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 18 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 19 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 20 C 0.14 2.34 5.47 -4.04 -0.02 2.32 16 21 C -0.16 -2.27 6.01 -90.61 -0.54 -2.81 16 22 C -0.18 -2.00 9.23 -26.73 -0.25 -2.25 16 23 C -0.18 -2.03 10.25 -26.72 -0.27 -2.31 16 24 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.06 0.58 6.78 -51.93 -0.35 0.23 16 26 H 0.06 0.53 7.32 -51.93 -0.38 0.15 16 27 H 0.07 1.24 6.13 -51.93 -0.32 0.92 16 28 H 0.05 0.76 7.69 -51.93 -0.40 0.36 16 29 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.06 0.71 8.10 -51.93 -0.42 0.29 16 31 H 0.09 1.62 7.05 -51.93 -0.37 1.25 16 32 H 0.07 1.21 8.06 -51.93 -0.42 0.79 16 33 H 0.08 0.93 7.63 -51.93 -0.40 0.53 16 34 H 0.03 0.83 8.07 -51.93 -0.42 0.41 16 35 H 0.04 1.25 7.42 -51.93 -0.39 0.87 16 36 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 37 H 0.08 1.47 8.07 -51.93 -0.42 1.05 16 38 H 0.07 1.00 5.54 -51.93 -0.29 0.71 16 39 H 0.11 1.70 8.14 -51.93 -0.42 1.28 16 40 H 0.09 0.95 6.96 -51.93 -0.36 0.59 16 41 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 43 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 LS Contribution 338.60 15.07 5.10 5.10 Total: -1.00 -31.64 338.60 -8.63 -40.26 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: -7.28 Total: 1.38 kcal Atomic # 6 Polarization: -9.57 SS G_CDS: -1.81 Total: -11.37 kcal Atomic # 7 Polarization: -39.36 SS G_CDS: 0.31 Total: -39.06 kcal Atomic # 8 Polarization: -13.44 SS G_CDS: 0.08 Total: -13.36 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -31.64 -8.63 -40.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597141325.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.631 kcal (2) G-P(sol) polarization free energy of solvation -31.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.262 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds