Wall clock time and date at job start Mon Mar 30 2020 08:27:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53009 * 112.90139 * 2 1 4 4 C 1.53779 * 113.61500 * 131.24669 * 2 1 3 5 5 C 1.53777 * 87.07930 * 89.12342 * 4 2 1 6 6 C 1.53779 * 113.61737 * 228.74965 * 2 1 3 7 7 H 1.08998 * 113.61386 * 25.42809 * 6 2 1 8 8 C 1.50695 * 113.69104 * 156.32073 * 6 2 1 9 9 O 1.21283 * 119.99957 * 62.67782 * 8 6 2 10 10 N 1.34775 * 120.00242 * 242.68134 * 8 6 2 11 11 C 1.46502 * 120.00241 * 180.02562 * 10 8 6 12 12 C 1.50697 * 109.47371 * 89.99393 * 11 10 8 13 13 H 1.07999 * 120.00144 * 0.02562 * 12 11 10 14 14 C 1.37876 * 119.99800 * 179.97438 * 12 11 10 15 15 N 1.31515 * 120.00164 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 120.00003 * 180.02562 * 14 12 11 17 17 H 1.48504 * 109.47055 * 359.97438 * 16 14 12 18 18 H 1.48498 * 109.47264 * 119.99850 * 16 14 12 19 19 H 1.48500 * 109.47114 * 240.00216 * 16 14 12 20 20 C 1.46505 * 119.99897 * 359.97438 * 10 8 6 21 21 C 1.53002 * 109.46653 * 90.00665 * 20 10 8 22 22 C 1.53005 * 117.49379 * 243.62460 * 21 20 10 23 23 C 1.53005 * 117.49660 * 175.00416 * 21 20 10 24 24 H 1.08995 * 109.47243 * 308.25034 * 1 2 3 25 25 H 1.08994 * 109.47132 * 68.25629 * 1 2 3 26 26 H 1.09000 * 109.46450 * 188.25610 * 1 2 3 27 27 H 1.09005 * 109.46690 * 184.02980 * 3 2 1 28 28 H 1.08998 * 109.46864 * 304.02553 * 3 2 1 29 29 H 1.08998 * 109.47052 * 64.02965 * 3 2 1 30 30 H 1.08991 * 113.61620 * 334.57224 * 4 2 1 31 31 H 1.09004 * 113.61000 * 203.66300 * 4 2 1 32 32 H 1.09003 * 113.61949 * 139.98246 * 5 4 2 33 33 H 1.09003 * 113.61132 * 270.88402 * 5 4 2 34 34 H 1.09004 * 109.46651 * 209.99584 * 11 10 8 35 35 H 1.09001 * 109.46935 * 329.98931 * 11 10 8 36 36 H 0.97004 * 119.99629 * 180.02562 * 15 14 12 37 37 H 1.08996 * 109.47136 * 210.00290 * 20 10 8 38 38 H 1.09001 * 109.47012 * 330.01037 * 20 10 8 39 39 H 1.08993 * 115.55426 * 29.33162 * 21 20 10 40 40 H 1.08993 * 117.50443 * 359.97438 * 22 21 20 41 41 H 1.09001 * 117.49559 * 145.02616 * 22 21 20 42 42 H 1.08996 * 117.49680 * 214.97640 * 23 21 20 43 43 H 1.08995 * 117.49899 * 359.97311 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1255 1.4095 0.0000 4 6 2.1461 -0.9290 1.0594 5 6 2.0932 -2.0424 0.0001 6 6 2.1461 -0.9290 -1.0593 7 1 1.4946 -1.1086 -1.9145 8 6 3.5466 -0.5443 -1.4612 9 8 4.4393 -0.5610 -0.6403 10 7 3.8073 -0.1817 -2.7328 11 6 5.1689 0.1918 -3.1236 12 6 5.9127 -1.0342 -3.5869 13 1 5.4204 -1.9954 -3.5904 14 6 7.2216 -0.9285 -4.0074 15 7 7.8210 0.2420 -4.0037 16 14 8.1434 -2.4481 -4.5824 17 1 7.2521 -3.6323 -4.4899 18 1 8.5752 -2.2617 -5.9909 19 1 9.3359 -2.6585 -3.7228 20 6 2.7291 -0.1620 -3.7246 21 6 2.0717 1.2195 -3.7357 22 6 0.6009 1.3052 -3.3226 23 6 0.9948 1.4809 -4.7907 24 1 -0.3633 0.6362 0.8070 25 1 -0.3633 0.3807 -0.9545 26 1 -0.3632 -1.0171 0.1476 27 1 3.2112 1.3452 -0.0722 28 1 1.7371 1.9679 -0.8517 29 1 1.8523 1.9193 0.9239 30 1 1.4946 -1.1085 1.9145 31 1 3.1592 -0.6497 1.3489 32 1 2.9719 -2.6873 0.0001 33 1 1.1571 -2.6009 0.0001 34 1 5.1275 0.9196 -3.9340 35 1 5.6853 0.6288 -2.2689 36 1 8.7417 0.3163 -4.2999 37 1 3.1391 -0.3772 -4.7113 38 1 1.9854 -0.9163 -3.4676 39 1 2.7208 2.0513 -3.4623 40 1 0.1017 0.3775 -3.0434 41 1 0.2823 2.1936 -2.7773 42 1 0.9353 2.4848 -5.2110 43 1 0.7550 0.6689 -5.4770 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597141325.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:27:54 Heat of formation + Delta-G solvation = -16.643763 kcal Electronic energy + Delta-G solvation = -21632.013896 eV Core-core repulsion = 18677.733062 eV Total energy + Delta-G solvation = -2954.280834 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.90278 -39.11768 -38.19307 -36.03408 -34.59531 -31.64867 -30.17460 -28.32913 -27.90913 -27.08561 -24.67949 -23.41892 -23.08835 -21.84374 -20.72413 -18.84743 -18.59641 -17.99239 -17.00897 -16.36860 -16.19486 -16.07935 -15.41403 -15.38704 -14.90775 -14.68506 -14.27614 -14.07220 -13.68900 -13.64250 -13.27009 -13.07595 -12.96114 -12.80860 -12.60890 -12.56923 -12.39242 -12.25655 -12.18227 -12.02689 -11.79272 -11.71436 -11.20575 -10.99365 -10.90806 -10.77782 -10.67198 -10.28587 -9.41010 -8.24802 -6.40186 1.33274 1.35924 1.47913 1.83861 2.27237 2.42849 3.01134 3.04215 3.51853 3.60371 3.76016 3.92324 3.92430 4.06275 4.09652 4.27458 4.32838 4.36925 4.61122 4.69522 4.75943 4.80797 4.83477 4.86938 4.87416 4.94083 5.00392 5.04947 5.07879 5.09911 5.19599 5.21012 5.26963 5.35415 5.36401 5.39902 5.46854 5.55709 5.73314 5.86114 6.04589 6.68395 6.84561 7.26726 7.55589 8.82466 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.019361 B = 0.006635 C = 0.005541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1445.868060 B = 4219.260236 C = 5051.815241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.049 4.049 3 C -0.141 4.141 4 C -0.133 4.133 5 C -0.118 4.118 6 C -0.132 4.132 7 H 0.113 0.887 8 C 0.522 3.478 9 O -0.595 6.595 10 N -0.599 5.599 11 C 0.266 3.734 12 C -0.542 4.542 13 H 0.052 0.948 14 C 0.007 3.993 15 N -0.929 5.929 16 Si 0.969 3.031 17 H -0.267 1.267 18 H -0.267 1.267 19 H -0.281 1.281 20 C 0.141 3.859 21 C -0.191 4.191 22 C -0.156 4.156 23 C -0.164 4.164 24 H 0.072 0.928 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.018 0.982 28 H 0.064 0.936 29 H 0.068 0.932 30 H 0.090 0.910 31 H 0.052 0.948 32 H 0.041 0.959 33 H 0.124 0.876 34 H 0.017 0.983 35 H -0.008 1.008 36 H 0.267 0.733 37 H 0.069 0.931 38 H 0.098 0.902 39 H 0.075 0.925 40 H 0.112 0.888 41 H 0.101 0.899 42 H 0.098 0.902 43 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.813 -0.390 2.938 21.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.050 4.050 3 C -0.198 4.198 4 C -0.170 4.170 5 C -0.156 4.156 6 C -0.153 4.153 7 H 0.131 0.869 8 C 0.312 3.688 9 O -0.477 6.477 10 N -0.328 5.328 11 C 0.145 3.855 12 C -0.580 4.580 13 H 0.070 0.930 14 C -0.192 4.192 15 N -0.569 5.569 16 Si 0.793 3.207 17 H -0.191 1.191 18 H -0.192 1.192 19 H -0.207 1.207 20 C 0.019 3.981 21 C -0.211 4.211 22 C -0.192 4.192 23 C -0.201 4.201 24 H 0.091 0.909 25 H 0.093 0.907 26 H 0.093 0.907 27 H 0.037 0.963 28 H 0.083 0.917 29 H 0.087 0.913 30 H 0.108 0.892 31 H 0.071 0.929 32 H 0.060 0.940 33 H 0.142 0.858 34 H 0.035 0.965 35 H 0.011 0.989 36 H 0.076 0.924 37 H 0.087 0.913 38 H 0.116 0.884 39 H 0.094 0.906 40 H 0.131 0.869 41 H 0.119 0.881 42 H 0.117 0.883 43 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -20.174 -0.300 3.289 20.442 hybrid contribution 1.764 -0.262 -0.401 1.827 sum -18.410 -0.562 2.889 18.644 Atomic orbital electron populations 1.21633 0.89373 1.03384 1.03421 1.21649 0.97233 0.92690 0.93434 1.21785 0.98998 0.96703 1.02307 1.23002 1.00507 0.96166 0.97329 1.22802 1.02642 0.95427 0.94729 1.22674 0.92268 1.00521 0.99814 0.86894 1.20680 0.90783 0.75972 0.81367 1.90601 1.49653 1.55526 1.51877 1.48146 1.09895 1.65346 1.09439 1.18631 0.78702 0.94773 0.93428 1.21731 0.98126 0.94790 1.43389 0.93003 1.25886 0.98179 0.99537 0.95611 1.70070 1.13203 1.25392 1.48254 0.85352 0.78162 0.78953 0.78255 1.19089 1.19194 1.20692 1.21250 0.88771 0.95993 0.92128 1.22581 0.92653 0.97799 1.08021 1.23169 0.94588 1.04198 0.97264 1.23026 1.01029 1.03591 0.92474 0.90939 0.90686 0.90698 0.96283 0.91744 0.91284 0.89153 0.92874 0.93981 0.85795 0.96516 0.98946 0.92397 0.91285 0.88381 0.90621 0.86935 0.88099 0.88313 0.87462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.83 9.07 71.98 0.65 -1.18 16 2 C -0.05 -1.21 1.34 -51.65 -0.07 -1.28 16 3 C -0.14 -4.05 8.72 71.99 0.63 -3.42 16 4 C -0.13 -3.64 6.78 31.12 0.21 -3.43 16 5 C -0.12 -3.21 7.12 31.12 0.22 -2.99 16 6 C -0.13 -3.92 3.38 -11.02 -0.04 -3.96 16 7 H 0.11 2.73 5.39 -2.39 -0.01 2.72 16 8 C 0.52 22.78 5.44 87.66 0.48 23.26 16 9 O -0.60 -32.16 14.00 -3.04 -0.04 -32.20 16 10 N -0.60 -26.77 2.46 -826.14 -2.03 -28.80 16 11 C 0.27 15.09 5.16 85.63 0.44 15.53 16 12 C -0.54 -32.48 9.39 25.60 0.24 -32.24 16 13 H 0.05 3.08 7.81 -2.91 -0.02 3.06 16 14 C 0.01 0.39 5.46 84.65 0.46 0.86 16 15 N -0.93 -57.94 13.29 21.45 0.28 -57.66 16 16 Si 0.97 46.17 29.54 68.60 2.03 48.20 16 17 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 18 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 19 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 20 C 0.14 4.68 5.47 86.38 0.47 5.15 16 21 C -0.19 -5.27 6.01 -10.79 -0.06 -5.34 16 22 C -0.16 -2.88 9.23 30.60 0.28 -2.60 16 23 C -0.16 -3.26 10.25 30.60 0.31 -2.94 16 24 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 25 H 0.07 0.96 6.78 -2.39 -0.02 0.94 16 26 H 0.07 0.91 7.32 -2.39 -0.02 0.89 16 27 H 0.02 0.72 6.13 -2.38 -0.01 0.70 16 28 H 0.06 1.70 7.69 -2.39 -0.02 1.68 16 29 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.09 1.89 8.10 -2.39 -0.02 1.88 16 31 H 0.05 1.91 7.05 -2.38 -0.02 1.89 16 32 H 0.04 1.40 8.06 -2.39 -0.02 1.38 16 33 H 0.12 2.30 7.63 -2.39 -0.02 2.28 16 34 H 0.02 0.98 8.07 -2.38 -0.02 0.96 16 35 H -0.01 -0.50 7.42 -2.39 -0.02 -0.52 16 36 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 37 H 0.07 2.45 8.07 -2.39 -0.02 2.43 16 38 H 0.10 2.61 5.54 -2.39 -0.01 2.60 16 39 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 40 H 0.11 1.67 6.96 -2.39 -0.02 1.65 16 41 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 42 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 43 H 0.11 1.86 8.14 -2.39 -0.02 1.85 16 Total: -1.00 -76.15 338.60 5.44 -70.70 By element: Atomic # 1 Polarization: 13.38 SS G_CDS: 0.97 Total: 14.35 kcal Atomic # 6 Polarization: -18.82 SS G_CDS: 4.23 Total: -14.59 kcal Atomic # 7 Polarization: -84.72 SS G_CDS: -1.74 Total: -86.46 kcal Atomic # 8 Polarization: -32.16 SS G_CDS: -0.04 Total: -32.20 kcal Atomic # 14 Polarization: 46.17 SS G_CDS: 2.03 Total: 48.20 kcal Total: -76.15 5.44 -70.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597141325.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.061 kcal (2) G-P(sol) polarization free energy of solvation -76.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds