Wall clock time and date at job start Mon Mar 30 2020 08:27:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 112.85282 * 2 1 4 4 C 1.53786 * 113.61391 * 228.80689 * 2 1 3 5 5 C 1.53965 * 87.01720 * 220.04775 * 4 2 1 6 6 C 1.53776 * 87.11144 * 25.36130 * 5 4 2 7 7 H 1.08996 * 113.61586 * 89.19060 * 6 5 4 8 8 C 1.50697 * 113.68921 * 220.07797 * 6 5 4 9 9 O 1.21278 * 120.00161 * 19.30756 * 8 6 5 10 10 N 1.34780 * 120.00145 * 199.30594 * 8 6 5 11 11 C 1.46499 * 120.00008 * 355.44763 * 10 8 6 12 12 C 1.50707 * 109.46717 * 92.69112 * 11 10 8 13 13 H 1.07999 * 120.00427 * 0.02562 * 12 11 10 14 14 C 1.37876 * 119.99707 * 179.97438 * 12 11 10 15 15 N 1.31519 * 120.00042 * 180.02562 * 14 12 11 16 16 Si 1.86799 * 120.00044 * 0.02562 * 14 12 11 17 17 H 1.48497 * 109.47359 * 89.99898 * 16 14 12 18 18 H 1.48505 * 109.47201 * 209.99632 * 16 14 12 19 19 H 1.48501 * 109.47195 * 329.99466 * 16 14 12 20 20 C 1.46501 * 120.00115 * 175.45163 * 10 8 6 21 21 C 1.52996 * 109.47205 * 94.57238 * 20 10 8 22 22 C 1.53002 * 117.49840 * 243.75279 * 21 20 10 23 23 C 1.53001 * 60.00072 * 252.51613 * 22 21 20 24 24 H 1.09001 * 109.47049 * 56.33119 * 1 2 3 25 25 H 1.09008 * 109.46940 * 296.33380 * 1 2 3 26 26 H 1.08996 * 109.47261 * 176.33331 * 1 2 3 27 27 H 1.08998 * 109.47068 * 64.69436 * 3 2 1 28 28 H 1.09002 * 109.47757 * 184.69620 * 3 2 1 29 29 H 1.09002 * 109.47081 * 304.69807 * 3 2 1 30 30 H 1.08995 * 113.61378 * 334.56256 * 4 2 1 31 31 H 1.08993 * 113.61496 * 105.46911 * 4 2 1 32 32 H 1.08998 * 113.53457 * 270.80841 * 5 4 2 33 33 H 1.09003 * 113.66449 * 139.93396 * 5 4 2 34 34 H 1.08995 * 109.47556 * 212.69565 * 11 10 8 35 35 H 1.09004 * 109.47178 * 332.70179 * 11 10 8 36 36 H 0.96996 * 120.00119 * 180.02562 * 15 14 12 37 37 H 1.09005 * 109.46916 * 214.57873 * 20 10 8 38 38 H 1.09001 * 109.46892 * 334.57114 * 20 10 8 39 39 H 1.08998 * 115.54784 * 29.47027 * 21 20 10 40 40 H 1.09000 * 117.49650 * 0.02562 * 22 21 20 41 41 H 1.08996 * 117.49462 * 145.01748 * 22 21 20 42 42 H 1.09001 * 117.49319 * 252.50838 * 23 22 21 43 43 H 1.08996 * 117.49865 * 107.49335 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1241 1.4099 0.0000 4 6 2.1460 -0.9280 -1.0603 5 6 3.1923 -1.3136 0.0013 6 6 2.1460 -0.9281 1.0602 7 1 1.4946 -1.7522 1.3506 8 6 2.7236 -0.1940 2.2428 9 8 3.8065 0.3444 2.1525 10 7 2.0366 -0.1358 3.4009 11 6 0.6866 -0.6992 3.4809 12 6 0.7655 -2.1263 3.9589 13 1 1.7250 -2.5691 4.1813 14 6 -0.3876 -2.8662 4.1134 15 7 -0.3190 -4.1115 4.5310 16 14 -2.0475 -2.1001 3.7294 17 1 -2.3833 -2.3358 2.3023 18 1 -3.0883 -2.7163 4.5911 19 1 -1.9905 -0.6392 3.9899 20 6 2.6398 0.4909 4.5798 21 6 2.2021 1.9548 4.6592 22 6 3.2881 3.0248 4.5305 23 6 2.6361 2.7560 5.8883 24 1 -0.3633 0.5697 -0.8553 25 1 -0.3633 0.4559 0.9211 26 1 -0.3633 -1.0255 -0.0657 27 1 1.8605 1.9153 0.9290 28 1 3.2091 1.3471 -0.0841 29 1 1.7262 1.9719 -0.8449 30 1 1.4945 -1.7522 -1.3507 31 1 2.5649 -0.3970 -1.9150 32 1 4.0710 -0.6687 0.0006 33 1 3.4443 -2.3741 0.0022 34 1 0.0895 -0.1142 4.1804 35 1 0.2223 -0.6715 2.4951 36 1 -1.1301 -4.6321 4.6393 37 1 2.3143 -0.0350 5.4774 38 1 3.7258 0.4400 4.5026 39 1 1.2235 2.1766 4.2336 40 1 4.3143 2.6858 4.3888 41 1 3.0242 3.9508 4.0199 42 1 1.9432 3.5055 6.2709 43 1 3.2334 2.2403 6.6402 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597141326.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:27:59 Heat of formation + Delta-G solvation = -2.976602 kcal Electronic energy + Delta-G solvation = -21662.320594 eV Core-core repulsion = 18708.632412 eV Total energy + Delta-G solvation = -2953.688182 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.33222 -38.02396 -36.58829 -34.75549 -32.43326 -30.40166 -28.61298 -27.36665 -27.13622 -25.06150 -22.56257 -22.14708 -22.01612 -20.54097 -19.00934 -17.35923 -17.00298 -16.56335 -15.79243 -14.98524 -14.62594 -14.57427 -14.11514 -13.96895 -13.61154 -13.01454 -12.82873 -12.64481 -12.36932 -12.15037 -11.93856 -11.81494 -11.56407 -11.32717 -11.28802 -11.17371 -10.93485 -10.85869 -10.69904 -10.45318 -10.35931 -10.12264 -9.90363 -9.73715 -9.63012 -9.55596 -8.84616 -8.70666 -7.69067 -6.21368 -4.22432 3.16313 3.24912 3.25997 3.35480 3.82786 4.15808 4.26419 4.74448 4.94151 4.99655 5.06939 5.10106 5.18633 5.21400 5.29147 5.50638 5.63631 5.75951 5.82210 5.83065 5.89409 5.93416 5.99972 6.09393 6.11131 6.14479 6.18533 6.24364 6.27130 6.30530 6.33715 6.36957 6.49937 6.54530 6.61648 6.68995 6.73660 6.87995 7.40149 7.48469 8.18385 8.45941 8.84297 9.03032 9.38643 10.91394 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.012092 B = 0.009865 C = 0.006619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2315.067641 B = 2837.662747 C = 4229.503596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.068 4.068 3 C -0.125 4.125 4 C -0.131 4.131 5 C -0.120 4.120 6 C -0.128 4.128 7 H 0.124 0.876 8 C 0.533 3.467 9 O -0.568 6.568 10 N -0.588 5.588 11 C 0.206 3.794 12 C -0.539 4.539 13 H 0.078 0.922 14 C 0.076 3.924 15 N -0.891 5.891 16 Si 0.867 3.133 17 H -0.272 1.272 18 H -0.284 1.284 19 H -0.264 1.264 20 C 0.149 3.851 21 C -0.159 4.159 22 C -0.174 4.174 23 C -0.181 4.181 24 H 0.053 0.947 25 H 0.057 0.943 26 H 0.060 0.940 27 H 0.054 0.946 28 H 0.066 0.934 29 H 0.051 0.949 30 H 0.081 0.919 31 H 0.066 0.934 32 H 0.090 0.910 33 H 0.067 0.933 34 H 0.030 0.970 35 H 0.036 0.964 36 H 0.266 0.734 37 H 0.081 0.919 38 H 0.076 0.924 39 H 0.101 0.899 40 H 0.094 0.906 41 H 0.085 0.915 42 H 0.089 0.911 43 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.984 10.189 -6.152 12.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.069 4.069 3 C -0.182 4.182 4 C -0.168 4.168 5 C -0.157 4.157 6 C -0.149 4.149 7 H 0.142 0.858 8 C 0.322 3.678 9 O -0.448 6.448 10 N -0.317 5.317 11 C 0.085 3.915 12 C -0.577 4.577 13 H 0.096 0.904 14 C -0.127 4.127 15 N -0.529 5.529 16 Si 0.694 3.306 17 H -0.197 1.197 18 H -0.209 1.209 19 H -0.188 1.188 20 C 0.025 3.975 21 C -0.179 4.179 22 C -0.211 4.211 23 C -0.219 4.219 24 H 0.072 0.928 25 H 0.076 0.924 26 H 0.079 0.921 27 H 0.073 0.927 28 H 0.085 0.915 29 H 0.070 0.930 30 H 0.100 0.900 31 H 0.085 0.915 32 H 0.109 0.891 33 H 0.086 0.914 34 H 0.048 0.952 35 H 0.054 0.946 36 H 0.076 0.924 37 H 0.099 0.901 38 H 0.094 0.906 39 H 0.119 0.881 40 H 0.113 0.887 41 H 0.104 0.896 42 H 0.108 0.892 43 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 2.409 10.289 -6.128 12.215 hybrid contribution -1.213 0.125 0.081 1.222 sum 1.196 10.414 -6.046 12.101 Atomic orbital electron populations 1.21815 0.94205 1.02167 1.01518 1.21683 0.94993 0.94734 0.95478 1.21577 1.01382 0.94135 1.01155 1.22999 0.98388 0.99052 0.96387 1.22799 0.97101 1.01524 0.94316 1.22953 0.99829 1.00015 0.92120 0.85778 1.20255 0.84390 0.79301 0.83821 1.90550 1.22320 1.48160 1.83782 1.47856 1.18001 1.56329 1.09525 1.19857 0.79219 0.94816 0.97650 1.21405 0.95493 0.94976 1.45848 0.90427 1.24868 0.98797 0.94622 0.94400 1.69894 1.28871 1.08342 1.45793 0.86982 0.84401 0.80206 0.79048 1.19705 1.20919 1.18847 1.20855 0.98203 0.89356 0.89040 1.22773 0.99261 0.93922 1.01923 1.22944 0.98403 1.00104 0.99651 1.22911 1.04079 1.03369 0.91508 0.92772 0.92366 0.92071 0.92677 0.91535 0.92990 0.90043 0.91550 0.89141 0.91380 0.95171 0.94636 0.92411 0.90053 0.90600 0.88123 0.88722 0.89605 0.89223 0.88854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.05 8.43 37.15 0.31 -1.74 16 2 C -0.07 -1.04 1.30 -153.70 -0.20 -1.25 16 3 C -0.13 -1.86 7.84 37.16 0.29 -1.57 16 4 C -0.13 -1.79 7.24 -25.82 -0.19 -1.98 16 5 C -0.12 -1.91 7.17 -25.82 -0.19 -2.09 16 6 C -0.13 -2.34 2.53 -90.96 -0.23 -2.57 16 7 H 0.12 2.52 6.60 -51.93 -0.34 2.17 16 8 C 0.53 10.88 5.94 -10.99 -0.07 10.82 16 9 O -0.57 -12.28 14.55 5.56 0.08 -12.20 16 10 N -0.59 -12.15 2.46 -175.06 -0.43 -12.58 16 11 C 0.21 4.57 3.86 -5.19 -0.02 4.55 16 12 C -0.54 -14.16 9.52 -34.44 -0.33 -14.49 16 13 H 0.08 2.29 8.06 -52.49 -0.42 1.87 16 14 C 0.08 2.06 5.47 -17.82 -0.10 1.96 16 15 N -0.89 -25.83 13.96 55.43 0.77 -25.06 16 16 Si 0.87 19.76 27.47 -169.99 -4.67 15.09 16 17 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 18 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 19 H -0.26 -5.72 6.54 56.52 0.37 -5.35 16 20 C 0.15 2.78 5.72 -4.04 -0.02 2.76 16 21 C -0.16 -2.56 6.01 -90.62 -0.54 -3.10 16 22 C -0.17 -2.48 10.18 -26.73 -0.27 -2.75 16 23 C -0.18 -2.40 10.25 -26.73 -0.27 -2.68 16 24 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.06 0.90 7.08 -51.92 -0.37 0.54 16 26 H 0.06 0.91 8.11 -51.93 -0.42 0.49 16 27 H 0.05 0.89 7.72 -51.93 -0.40 0.49 16 28 H 0.07 1.05 6.79 -51.93 -0.35 0.69 16 29 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.08 1.05 8.07 -51.93 -0.42 0.63 16 31 H 0.07 0.80 8.10 -51.93 -0.42 0.38 16 32 H 0.09 1.50 6.82 -51.93 -0.35 1.14 16 33 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 34 H 0.03 0.67 7.15 -51.93 -0.37 0.30 16 35 H 0.04 0.76 4.15 -51.93 -0.22 0.55 16 36 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 37 H 0.08 1.54 8.11 -51.93 -0.42 1.12 16 38 H 0.08 1.44 7.09 -51.93 -0.37 1.07 16 39 H 0.10 1.67 8.14 -51.93 -0.42 1.25 16 40 H 0.09 1.40 8.03 -51.93 -0.42 0.98 16 41 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 42 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 43 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 LS Contribution 337.83 15.07 5.09 5.09 Total: -1.00 -28.70 337.83 -8.40 -37.10 By element: Atomic # 1 Polarization: 14.10 SS G_CDS: -7.42 Total: 6.68 kcal Atomic # 6 Polarization: -12.30 SS G_CDS: -1.82 Total: -14.13 kcal Atomic # 7 Polarization: -37.99 SS G_CDS: 0.34 Total: -37.64 kcal Atomic # 8 Polarization: -12.28 SS G_CDS: 0.08 Total: -12.20 kcal Atomic # 14 Polarization: 19.76 SS G_CDS: -4.67 Total: 15.09 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -28.70 -8.40 -37.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597141326.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.125 kcal (2) G-P(sol) polarization free energy of solvation -28.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds