Wall clock time and date at job start Mon Mar 30 2020 08:27:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 112.85282 * 2 1 4 4 C 1.53786 * 113.61391 * 228.80689 * 2 1 3 5 5 C 1.53965 * 87.01720 * 220.04775 * 4 2 1 6 6 C 1.53776 * 87.11144 * 25.36130 * 5 4 2 7 7 H 1.08996 * 113.61586 * 89.19060 * 6 5 4 8 8 C 1.50697 * 113.68921 * 220.07797 * 6 5 4 9 9 O 1.21278 * 120.00161 * 19.30756 * 8 6 5 10 10 N 1.34780 * 120.00145 * 199.30594 * 8 6 5 11 11 C 1.46499 * 120.00008 * 355.44763 * 10 8 6 12 12 C 1.50707 * 109.46717 * 92.69112 * 11 10 8 13 13 H 1.07999 * 120.00427 * 0.02562 * 12 11 10 14 14 C 1.37876 * 119.99707 * 179.97438 * 12 11 10 15 15 N 1.31519 * 120.00042 * 180.02562 * 14 12 11 16 16 Si 1.86799 * 120.00044 * 0.02562 * 14 12 11 17 17 H 1.48497 * 109.47359 * 89.99898 * 16 14 12 18 18 H 1.48505 * 109.47201 * 209.99632 * 16 14 12 19 19 H 1.48501 * 109.47195 * 329.99466 * 16 14 12 20 20 C 1.46501 * 120.00115 * 175.45163 * 10 8 6 21 21 C 1.52996 * 109.47205 * 94.57238 * 20 10 8 22 22 C 1.53002 * 117.49840 * 243.75279 * 21 20 10 23 23 C 1.53001 * 60.00072 * 252.51613 * 22 21 20 24 24 H 1.09001 * 109.47049 * 56.33119 * 1 2 3 25 25 H 1.09008 * 109.46940 * 296.33380 * 1 2 3 26 26 H 1.08996 * 109.47261 * 176.33331 * 1 2 3 27 27 H 1.08998 * 109.47068 * 64.69436 * 3 2 1 28 28 H 1.09002 * 109.47757 * 184.69620 * 3 2 1 29 29 H 1.09002 * 109.47081 * 304.69807 * 3 2 1 30 30 H 1.08995 * 113.61378 * 334.56256 * 4 2 1 31 31 H 1.08993 * 113.61496 * 105.46911 * 4 2 1 32 32 H 1.08998 * 113.53457 * 270.80841 * 5 4 2 33 33 H 1.09003 * 113.66449 * 139.93396 * 5 4 2 34 34 H 1.08995 * 109.47556 * 212.69565 * 11 10 8 35 35 H 1.09004 * 109.47178 * 332.70179 * 11 10 8 36 36 H 0.96996 * 120.00119 * 180.02562 * 15 14 12 37 37 H 1.09005 * 109.46916 * 214.57873 * 20 10 8 38 38 H 1.09001 * 109.46892 * 334.57114 * 20 10 8 39 39 H 1.08998 * 115.54784 * 29.47027 * 21 20 10 40 40 H 1.09000 * 117.49650 * 0.02562 * 22 21 20 41 41 H 1.08996 * 117.49462 * 145.01748 * 22 21 20 42 42 H 1.09001 * 117.49319 * 252.50838 * 23 22 21 43 43 H 1.08996 * 117.49865 * 107.49335 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1241 1.4099 0.0000 4 6 2.1460 -0.9280 -1.0603 5 6 3.1923 -1.3136 0.0013 6 6 2.1460 -0.9281 1.0602 7 1 1.4946 -1.7522 1.3506 8 6 2.7236 -0.1940 2.2428 9 8 3.8065 0.3444 2.1525 10 7 2.0366 -0.1358 3.4009 11 6 0.6866 -0.6992 3.4809 12 6 0.7655 -2.1263 3.9589 13 1 1.7250 -2.5691 4.1813 14 6 -0.3876 -2.8662 4.1134 15 7 -0.3190 -4.1115 4.5310 16 14 -2.0475 -2.1001 3.7294 17 1 -2.3833 -2.3358 2.3023 18 1 -3.0883 -2.7163 4.5911 19 1 -1.9905 -0.6392 3.9899 20 6 2.6398 0.4909 4.5798 21 6 2.2021 1.9548 4.6592 22 6 3.2881 3.0248 4.5305 23 6 2.6361 2.7560 5.8883 24 1 -0.3633 0.5697 -0.8553 25 1 -0.3633 0.4559 0.9211 26 1 -0.3633 -1.0255 -0.0657 27 1 1.8605 1.9153 0.9290 28 1 3.2091 1.3471 -0.0841 29 1 1.7262 1.9719 -0.8449 30 1 1.4945 -1.7522 -1.3507 31 1 2.5649 -0.3970 -1.9150 32 1 4.0710 -0.6687 0.0006 33 1 3.4443 -2.3741 0.0022 34 1 0.0895 -0.1142 4.1804 35 1 0.2223 -0.6715 2.4951 36 1 -1.1301 -4.6321 4.6393 37 1 2.3143 -0.0350 5.4774 38 1 3.7258 0.4400 4.5026 39 1 1.2235 2.1766 4.2336 40 1 4.3143 2.6858 4.3888 41 1 3.0242 3.9508 4.0199 42 1 1.9432 3.5055 6.2709 43 1 3.2334 2.2403 6.6402 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597141326.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:27:58 Heat of formation + Delta-G solvation = -17.646962 kcal Electronic energy + Delta-G solvation = -21662.956748 eV Core-core repulsion = 18708.632412 eV Total energy + Delta-G solvation = -2954.324336 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.76756 -39.40182 -37.94095 -36.45590 -34.44921 -31.61376 -30.36376 -28.96723 -28.31311 -26.46897 -24.43551 -23.35075 -23.19700 -21.85336 -20.46970 -19.06059 -18.77005 -18.12097 -17.32519 -16.51035 -16.09764 -15.90532 -15.68195 -15.25445 -15.03063 -14.57432 -14.32323 -14.09202 -13.91031 -13.70746 -13.40155 -13.12818 -12.99876 -12.75817 -12.53988 -12.46150 -12.34788 -12.33424 -12.19364 -12.05993 -11.74122 -11.70957 -11.32865 -11.18570 -10.96689 -10.86861 -10.79459 -10.37712 -9.39180 -8.31155 -6.38272 1.37456 1.39138 1.48701 1.76152 2.30218 2.33026 2.93738 3.02610 3.51088 3.68816 3.69865 3.82143 3.89888 3.99630 4.09957 4.21197 4.31897 4.39064 4.61686 4.66708 4.70273 4.72795 4.75112 4.78033 4.78424 4.86817 4.89111 4.92737 4.99076 5.00262 5.04136 5.15624 5.22982 5.24545 5.25973 5.31891 5.43280 5.49483 5.61869 5.76925 6.18231 6.63483 6.71979 7.24885 7.41359 8.85343 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.012092 B = 0.009865 C = 0.006619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2315.067641 B = 2837.662747 C = 4229.503596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.064 4.064 3 C -0.119 4.119 4 C -0.112 4.112 5 C -0.121 4.121 6 C -0.144 4.144 7 H 0.099 0.901 8 C 0.528 3.472 9 O -0.584 6.584 10 N -0.596 5.596 11 C 0.219 3.781 12 C -0.539 4.539 13 H 0.027 0.973 14 C 0.021 3.979 15 N -0.942 5.942 16 Si 0.934 3.066 17 H -0.255 1.255 18 H -0.285 1.285 19 H -0.242 1.242 20 C 0.148 3.852 21 C -0.180 4.180 22 C -0.169 4.169 23 C -0.158 4.158 24 H 0.083 0.917 25 H 0.046 0.954 26 H 0.056 0.944 27 H 0.037 0.963 28 H 0.053 0.947 29 H 0.081 0.919 30 H 0.092 0.908 31 H 0.091 0.909 32 H 0.083 0.917 33 H 0.067 0.933 34 H 0.037 0.963 35 H 0.051 0.949 36 H 0.268 0.732 37 H 0.069 0.931 38 H 0.064 0.936 39 H 0.098 0.902 40 H 0.085 0.915 41 H 0.101 0.899 42 H 0.112 0.888 43 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.452 12.510 -7.725 14.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.064 4.064 3 C -0.176 4.176 4 C -0.150 4.150 5 C -0.159 4.159 6 C -0.165 4.165 7 H 0.118 0.882 8 C 0.318 3.682 9 O -0.466 6.466 10 N -0.325 5.325 11 C 0.097 3.903 12 C -0.578 4.578 13 H 0.045 0.955 14 C -0.178 4.178 15 N -0.581 5.581 16 Si 0.757 3.243 17 H -0.179 1.179 18 H -0.210 1.210 19 H -0.165 1.165 20 C 0.025 3.975 21 C -0.199 4.199 22 C -0.206 4.206 23 C -0.196 4.196 24 H 0.101 0.899 25 H 0.065 0.935 26 H 0.075 0.925 27 H 0.056 0.944 28 H 0.072 0.928 29 H 0.100 0.900 30 H 0.111 0.889 31 H 0.109 0.891 32 H 0.102 0.898 33 H 0.085 0.915 34 H 0.055 0.945 35 H 0.069 0.931 36 H 0.077 0.923 37 H 0.087 0.913 38 H 0.083 0.917 39 H 0.116 0.884 40 H 0.103 0.897 41 H 0.120 0.880 42 H 0.131 0.869 43 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 0.899 12.629 -7.701 14.819 hybrid contribution -0.592 -0.663 0.634 1.092 sum 0.307 11.967 -7.066 13.901 Atomic orbital electron populations 1.21828 0.93317 1.02336 1.02251 1.21738 0.95696 0.94689 0.94298 1.21521 1.00660 0.93938 1.01494 1.22947 0.97017 0.98921 0.96073 1.22809 0.97053 1.01355 0.94675 1.23053 1.00938 1.00193 0.92306 0.88245 1.20707 0.84147 0.79049 0.84260 1.90526 1.22894 1.49059 1.84133 1.47943 1.17703 1.56504 1.10330 1.19628 0.80298 0.92188 0.98138 1.21511 0.93520 0.97072 1.45689 0.95486 1.25763 1.03196 0.94854 0.93979 1.70054 1.30220 1.10269 1.47594 0.85904 0.78521 0.80337 0.79574 1.17927 1.21037 1.16482 1.20879 0.97427 0.91279 0.87920 1.22588 0.99748 0.92374 1.05182 1.22967 0.97265 0.99707 1.00646 1.23031 1.03447 1.02342 0.90754 0.89859 0.93483 0.92496 0.94432 0.92765 0.89996 0.88933 0.89060 0.89835 0.91473 0.94520 0.93116 0.92258 0.91304 0.91721 0.88424 0.89689 0.88031 0.86937 0.88265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.70 8.43 71.98 0.61 -3.09 16 2 C -0.06 -1.82 1.30 -51.65 -0.07 -1.89 16 3 C -0.12 -3.28 7.84 71.98 0.56 -2.71 16 4 C -0.11 -2.78 7.24 31.18 0.23 -2.55 16 5 C -0.12 -3.80 7.17 31.18 0.22 -3.58 16 6 C -0.14 -5.26 2.53 -11.02 -0.03 -5.28 16 7 H 0.10 4.13 6.60 -2.39 -0.02 4.11 16 8 C 0.53 22.01 5.94 87.66 0.52 22.53 16 9 O -0.58 -25.81 14.55 -3.02 -0.04 -25.86 16 10 N -0.60 -25.24 2.46 -826.14 -2.03 -27.27 16 11 C 0.22 9.78 3.86 85.64 0.33 10.11 16 12 C -0.54 -29.38 9.52 25.60 0.24 -29.13 16 13 H 0.03 1.70 8.06 -2.91 -0.02 1.67 16 14 C 0.02 1.15 5.47 84.65 0.46 1.61 16 15 N -0.94 -56.32 13.96 21.45 0.30 -56.02 16 16 Si 0.93 40.12 27.47 68.60 1.88 42.01 16 17 H -0.25 -10.25 7.11 99.48 0.71 -9.55 16 18 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 19 H -0.24 -9.44 6.54 99.48 0.65 -8.79 16 20 C 0.15 5.68 5.72 86.38 0.49 6.18 16 21 C -0.18 -5.64 6.01 -10.79 -0.06 -5.71 16 22 C -0.17 -4.57 10.18 30.60 0.31 -4.26 16 23 C -0.16 -3.88 10.25 30.60 0.31 -3.56 16 24 H 0.08 1.71 8.14 -2.39 -0.02 1.70 16 25 H 0.05 1.34 7.08 -2.38 -0.02 1.32 16 26 H 0.06 1.54 8.11 -2.39 -0.02 1.52 16 27 H 0.04 1.15 7.72 -2.39 -0.02 1.13 16 28 H 0.05 1.62 6.79 -2.39 -0.02 1.60 16 29 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 30 H 0.09 2.11 8.07 -2.39 -0.02 2.09 16 31 H 0.09 1.85 8.10 -2.39 -0.02 1.83 16 32 H 0.08 2.75 6.82 -2.39 -0.02 2.73 16 33 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 34 H 0.04 1.60 7.15 -2.39 -0.02 1.58 16 35 H 0.05 2.13 4.15 -2.39 -0.01 2.12 16 36 H 0.27 14.96 8.31 -92.71 -0.77 14.19 16 37 H 0.07 2.73 8.11 -2.38 -0.02 2.71 16 38 H 0.06 2.57 7.09 -2.39 -0.02 2.56 16 39 H 0.10 3.13 8.14 -2.39 -0.02 3.11 16 40 H 0.08 2.47 8.03 -2.39 -0.02 2.45 16 41 H 0.10 2.43 8.14 -2.39 -0.02 2.41 16 42 H 0.11 2.28 8.14 -2.39 -0.02 2.26 16 43 H 0.10 2.32 8.14 -2.39 -0.02 2.30 16 Total: -1.00 -64.33 337.83 5.16 -59.17 By element: Atomic # 1 Polarization: 28.40 SS G_CDS: 0.91 Total: 29.31 kcal Atomic # 6 Polarization: -25.48 SS G_CDS: 4.14 Total: -21.34 kcal Atomic # 7 Polarization: -81.56 SS G_CDS: -1.73 Total: -83.29 kcal Atomic # 8 Polarization: -25.81 SS G_CDS: -0.04 Total: -25.86 kcal Atomic # 14 Polarization: 40.12 SS G_CDS: 1.88 Total: 42.01 kcal Total: -64.33 5.16 -59.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597141326.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.525 kcal (2) G-P(sol) polarization free energy of solvation -64.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds