Wall clock time and date at job start Mon Mar 30 2020 08:11:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.29439 * 117.96054 * 2 1 4 4 C 1.50072 * 124.07534 * 179.53084 * 3 2 1 5 5 C 1.53022 * 110.14710 * 17.13367 * 4 3 2 6 6 C 1.52998 * 109.64613 * 190.66439 * 5 4 3 7 7 C 1.50701 * 109.63983 * 70.24691 * 5 4 3 8 8 O 1.21286 * 120.00391 * 5.53921 * 7 5 4 9 9 N 1.34777 * 120.00498 * 185.53358 * 7 5 4 10 10 C 1.46492 * 120.00487 * 180.02562 * 9 7 5 11 11 C 1.53004 * 109.46968 * 180.02562 * 10 9 7 12 12 C 1.53005 * 109.47216 * 179.97438 * 11 10 9 13 13 C 1.50692 * 109.47225 * 179.97438 * 12 11 10 14 14 H 1.07999 * 120.00196 * 0.02562 * 13 12 11 15 15 C 1.37880 * 120.00007 * 179.97438 * 13 12 11 16 16 N 1.31519 * 119.99700 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 120.00212 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.46922 * 90.00084 * 17 15 13 19 19 H 1.48497 * 109.47072 * 209.99966 * 17 15 13 20 20 H 1.48500 * 109.47027 * 330.00281 * 17 15 13 21 21 C 1.53388 * 108.43846 * 310.56656 * 5 4 3 22 22 C 1.50062 * 117.96345 * 179.97438 * 2 1 3 23 23 H 1.09000 * 109.47244 * 359.97438 * 1 2 3 24 24 H 1.09003 * 109.47318 * 119.99867 * 1 2 3 25 25 H 1.09003 * 109.47200 * 239.99660 * 1 2 3 26 26 H 1.08000 * 117.96277 * 359.51267 * 3 2 1 27 27 H 1.08999 * 109.35852 * 256.92828 * 4 3 2 28 28 H 1.09004 * 109.35819 * 137.34556 * 4 3 2 29 29 H 1.09001 * 109.46999 * 299.58430 * 6 5 4 30 30 H 1.09002 * 109.46447 * 59.58100 * 6 5 4 31 31 H 1.08997 * 109.47401 * 179.58027 * 6 5 4 32 32 H 0.97004 * 119.99561 * 0.02562 * 9 7 5 33 33 H 1.08994 * 109.47459 * 60.00231 * 10 9 7 34 34 H 1.08997 * 109.47084 * 299.99611 * 10 9 7 35 35 H 1.09005 * 109.47324 * 60.00450 * 11 10 9 36 36 H 1.08996 * 109.47463 * 299.99765 * 11 10 9 37 37 H 1.09006 * 109.46969 * 300.00405 * 12 11 10 38 38 H 1.09003 * 109.46733 * 59.99658 * 12 11 10 39 39 H 0.97004 * 119.99384 * 180.02562 * 16 15 13 40 40 H 1.09004 * 109.64057 * 187.11531 * 21 5 4 41 41 H 1.09000 * 109.64321 * 307.74352 * 21 5 4 42 42 H 1.08998 * 109.35936 * 317.33376 * 22 2 1 43 43 H 1.09004 * 109.36244 * 76.91971 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1139 1.1433 0.0000 4 6 3.6060 1.3032 0.0102 5 6 4.2794 -0.0073 -0.4032 6 6 5.7833 0.0806 -0.1364 7 6 4.0389 -0.2598 -1.8693 8 8 3.4791 0.5773 -2.5451 9 7 4.4462 -1.4160 -2.4297 10 6 4.2130 -1.6612 -3.8550 11 6 4.7671 -3.0363 -4.2332 12 6 4.5230 -3.2928 -5.7217 13 6 5.0693 -4.6469 -6.0943 14 1 5.5429 -5.2631 -5.3445 15 6 4.9637 -5.0995 -7.3924 16 7 4.3865 -4.3492 -8.3055 17 14 5.6403 -6.7783 -7.8543 18 1 4.5828 -7.8050 -7.6731 19 1 6.0770 -6.7626 -9.2735 20 1 6.7987 -7.1018 -6.9833 21 6 3.6704 -1.1472 0.4230 22 6 2.2107 -1.3254 0.0006 23 1 -0.3634 1.0277 0.0005 24 1 -0.3634 -0.5138 -0.8900 25 1 -0.3634 -0.5139 0.8900 26 1 1.5088 2.0378 -0.0081 27 1 3.9333 1.5768 1.0132 28 1 3.8898 2.0910 -0.6876 29 1 6.2084 0.8981 -0.7188 30 1 5.9539 0.2633 0.9246 31 1 6.2589 -0.8567 -0.4248 32 1 4.8937 -2.0857 -1.8892 33 1 4.7148 -0.8927 -4.4428 34 1 3.1425 -1.6329 -4.0581 35 1 4.2648 -3.8047 -3.6454 36 1 5.8376 -3.0651 -4.0300 37 1 3.4524 -3.2641 -5.9245 38 1 5.0249 -2.5244 -6.3098 39 1 4.3119 -4.6678 -9.2187 40 1 4.2210 -2.0694 0.2367 41 1 3.7168 -0.8970 1.4828 42 1 1.7122 -1.9988 0.6978 43 1 2.1745 -1.7542 -1.0009 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597150457.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:11:09 Heat of formation + Delta-G solvation = -81.242148 kcal Electronic energy + Delta-G solvation = -20419.285452 eV Core-core repulsion = 17462.203422 eV Total energy + Delta-G solvation = -2957.082031 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.73777 -38.74545 -36.91212 -35.33593 -34.89836 -32.94968 -31.67369 -29.75372 -28.58340 -25.77902 -25.28979 -24.17292 -23.36170 -22.30982 -20.56733 -19.03695 -18.47211 -17.20350 -16.90372 -16.52591 -16.31973 -16.17018 -15.56698 -15.14435 -15.06675 -14.70471 -14.30348 -14.09106 -13.77558 -13.64328 -13.40996 -13.31296 -13.23440 -13.07381 -12.81942 -12.73172 -12.55407 -12.49900 -12.37536 -12.20606 -11.68645 -11.56626 -11.34025 -11.24145 -11.11359 -10.57427 -10.56236 -10.06587 -9.56046 -8.20050 -6.31926 1.40659 1.41581 1.43112 1.54152 1.73503 2.25135 2.42883 3.13753 3.54959 3.67189 3.74146 4.06621 4.11221 4.18770 4.21514 4.33928 4.42984 4.52488 4.53369 4.68265 4.72479 4.81543 4.83475 4.90851 4.92457 4.94728 4.97971 5.00835 5.06923 5.15097 5.16978 5.23635 5.27207 5.32044 5.46413 5.53685 5.68820 5.78603 5.82899 6.16619 6.21192 6.63799 6.85671 7.33551 7.37995 8.92187 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.029185 B = 0.003609 C = 0.003493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.166120 B = 7756.835533 C = 8013.157488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.146 4.146 3 C -0.156 4.156 4 C -0.066 4.066 5 C -0.076 4.076 6 C -0.138 4.138 7 C 0.518 3.482 8 O -0.586 6.586 9 N -0.715 5.715 10 C 0.132 3.868 11 C -0.100 4.100 12 C 0.023 3.977 13 C -0.541 4.541 14 H 0.068 0.932 15 C -0.004 4.004 16 N -0.936 5.936 17 Si 0.968 3.032 18 H -0.272 1.272 19 H -0.285 1.285 20 H -0.259 1.259 21 C -0.101 4.101 22 C -0.092 4.092 23 H 0.060 0.940 24 H 0.051 0.949 25 H 0.078 0.922 26 H 0.100 0.900 27 H 0.107 0.893 28 H 0.061 0.939 29 H 0.051 0.949 30 H 0.096 0.904 31 H 0.072 0.928 32 H 0.412 0.588 33 H 0.045 0.955 34 H 0.042 0.958 35 H 0.068 0.932 36 H 0.069 0.931 37 H -0.010 1.010 38 H -0.010 1.010 39 H 0.263 0.737 40 H 0.088 0.912 41 H 0.100 0.900 42 H 0.091 0.909 43 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.387 7.004 23.591 24.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.146 4.146 3 C -0.174 4.174 4 C -0.103 4.103 5 C -0.079 4.079 6 C -0.195 4.195 7 C 0.306 3.694 8 O -0.465 6.465 9 N -0.367 5.367 10 C 0.008 3.992 11 C -0.138 4.138 12 C -0.014 4.014 13 C -0.579 4.579 14 H 0.086 0.914 15 C -0.201 4.201 16 N -0.576 5.576 17 Si 0.793 3.207 18 H -0.198 1.198 19 H -0.211 1.211 20 H -0.183 1.183 21 C -0.139 4.139 22 C -0.129 4.129 23 H 0.079 0.921 24 H 0.070 0.930 25 H 0.097 0.903 26 H 0.118 0.882 27 H 0.125 0.875 28 H 0.079 0.921 29 H 0.070 0.930 30 H 0.115 0.885 31 H 0.091 0.909 32 H 0.249 0.751 33 H 0.063 0.937 34 H 0.061 0.939 35 H 0.086 0.914 36 H 0.087 0.913 37 H 0.008 0.992 38 H 0.009 0.991 39 H 0.072 0.928 40 H 0.107 0.893 41 H 0.119 0.881 42 H 0.110 0.890 43 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -0.831 7.601 22.925 24.166 hybrid contribution 0.001 -0.730 -1.101 1.321 sum -0.830 6.871 21.824 22.895 Atomic orbital electron populations 1.20940 0.92206 1.02368 1.02021 1.21005 0.96436 0.95251 1.01912 1.21960 0.96552 0.97208 1.01705 1.20355 0.92118 0.95551 1.02299 1.20967 0.99020 0.98519 0.89363 1.21864 0.90592 1.02945 1.04128 1.21188 0.76698 0.80743 0.90797 1.90662 1.43840 1.46530 1.65488 1.45984 1.60741 1.19722 1.10284 1.21152 0.99361 0.97414 0.81290 1.21583 1.00828 0.94041 0.97318 1.18945 0.95038 0.95601 0.91840 1.21676 1.38054 1.03006 0.95132 0.91425 1.26044 0.95586 1.01836 0.96654 1.70124 1.45159 1.39332 1.03028 0.85398 0.79003 0.78947 0.77398 1.19797 1.21068 1.18284 1.21738 0.94299 0.97192 1.00649 1.20465 0.96119 0.94941 1.01326 0.92068 0.93019 0.90315 0.88161 0.87537 0.92082 0.93013 0.88542 0.90947 0.75085 0.93700 0.93950 0.91364 0.91282 0.99205 0.99126 0.92824 0.89332 0.88120 0.89032 0.93241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.36 9.98 71.24 0.71 -1.65 16 2 C -0.15 -3.28 5.65 -15.09 -0.09 -3.37 16 3 C -0.16 -3.58 8.66 27.04 0.23 -3.34 16 4 C -0.07 -1.34 4.54 29.66 0.13 -1.21 16 5 C -0.08 -1.48 0.65 -52.79 -0.03 -1.52 16 6 C -0.14 -1.98 8.45 71.98 0.61 -1.37 16 7 C 0.52 15.27 4.73 87.66 0.41 15.68 16 8 O -0.59 -22.99 15.30 -3.05 -0.05 -23.03 16 9 N -0.72 -20.20 5.34 -463.07 -2.47 -22.67 16 10 C 0.13 4.84 5.67 86.38 0.49 5.33 16 11 C -0.10 -3.90 5.27 30.60 0.16 -3.74 16 12 C 0.02 1.24 4.97 29.85 0.15 1.39 16 13 C -0.54 -30.32 9.11 25.60 0.23 -30.09 16 14 H 0.07 3.54 7.74 -2.91 -0.02 3.52 16 15 C 0.00 -0.21 5.46 84.65 0.46 0.25 16 16 N -0.94 -57.64 13.29 21.45 0.28 -57.36 16 17 Si 0.97 43.81 29.54 68.60 2.03 45.84 16 18 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 19 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 20 H -0.26 -11.00 7.11 99.48 0.71 -10.29 16 21 C -0.10 -1.55 4.73 30.73 0.15 -1.40 16 22 C -0.09 -1.83 5.29 29.65 0.16 -1.67 16 23 H 0.06 1.15 7.56 -2.39 -0.02 1.13 16 24 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 25 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 26 H 0.10 2.23 7.56 -2.91 -0.02 2.20 16 27 H 0.11 1.49 8.11 -2.39 -0.02 1.47 16 28 H 0.06 1.49 7.68 -2.39 -0.02 1.47 16 29 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.07 0.92 7.95 -2.39 -0.02 0.90 16 32 H 0.41 8.86 7.61 -92.71 -0.71 8.15 16 33 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.07 2.48 8.14 -2.38 -0.02 2.46 16 36 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 37 H -0.01 -0.60 8.14 -2.38 -0.02 -0.62 16 38 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 39 H 0.26 15.22 8.31 -92.70 -0.77 14.45 16 40 H 0.09 1.07 7.60 -2.39 -0.02 1.06 16 41 H 0.10 1.11 8.12 -2.39 -0.02 1.09 16 42 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 43 H 0.05 1.25 7.37 -2.39 -0.02 1.23 16 Total: -1.00 -71.92 343.12 3.83 -68.09 By element: Atomic # 1 Polarization: 15.58 SS G_CDS: 0.26 Total: 15.84 kcal Atomic # 6 Polarization: -30.48 SS G_CDS: 3.78 Total: -26.70 kcal Atomic # 7 Polarization: -77.84 SS G_CDS: -2.19 Total: -80.03 kcal Atomic # 8 Polarization: -22.99 SS G_CDS: -0.05 Total: -23.03 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.84 kcal Total: -71.92 3.83 -68.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597150457.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.155 kcal (2) G-P(sol) polarization free energy of solvation -71.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds