Wall clock time and date at job start Mon Mar 30 2020 08:11:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.29437 * 117.96003 * 2 1 4 4 C 1.50075 * 124.06989 * 180.46342 * 3 2 1 5 5 C 1.53018 * 110.14987 * 342.89307 * 4 3 2 6 6 C 1.53001 * 109.64259 * 169.11770 * 5 4 3 7 7 C 1.50697 * 109.64380 * 289.75244 * 5 4 3 8 8 O 1.21281 * 120.00045 * 354.46163 * 7 5 4 9 9 N 1.34776 * 120.00061 * 174.46982 * 7 5 4 10 10 C 1.46499 * 119.99945 * 179.97438 * 9 7 5 11 11 C 1.53002 * 109.46880 * 179.97438 * 10 9 7 12 12 C 1.52998 * 109.47087 * 179.97438 * 11 10 9 13 13 C 1.50699 * 109.47227 * 179.97438 * 12 11 10 14 14 H 1.08005 * 120.00084 * 0.02562 * 13 12 11 15 15 C 1.37874 * 120.00208 * 180.02562 * 13 12 11 16 16 N 1.31523 * 119.99996 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 120.00259 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47084 * 59.99540 * 17 15 13 19 19 H 1.48497 * 109.46940 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.46864 * 299.99701 * 17 15 13 21 21 C 1.53406 * 108.43491 * 49.43307 * 5 4 3 22 22 C 1.50062 * 117.96101 * 180.02562 * 2 1 3 23 23 H 1.09002 * 109.46971 * 0.02562 * 1 2 3 24 24 H 1.09005 * 109.46595 * 119.99893 * 1 2 3 25 25 H 1.08997 * 109.47501 * 239.99909 * 1 2 3 26 26 H 1.07996 * 117.96629 * 0.49316 * 3 2 1 27 27 H 1.09005 * 109.35495 * 103.10724 * 4 3 2 28 28 H 1.09001 * 109.35590 * 222.68236 * 4 3 2 29 29 H 1.09001 * 109.46824 * 59.99825 * 6 5 4 30 30 H 1.08996 * 109.47401 * 180.02562 * 6 5 4 31 31 H 1.08998 * 109.46998 * 300.00504 * 6 5 4 32 32 H 0.97006 * 120.00042 * 359.97438 * 9 7 5 33 33 H 1.08998 * 109.47208 * 299.99252 * 10 9 7 34 34 H 1.09002 * 109.47177 * 59.99931 * 10 9 7 35 35 H 1.09008 * 109.47221 * 300.00228 * 11 10 9 36 36 H 1.08999 * 109.47356 * 59.99749 * 11 10 9 37 37 H 1.08998 * 109.47386 * 300.00135 * 12 11 10 38 38 H 1.09002 * 109.47043 * 60.00198 * 12 11 10 39 39 H 0.96995 * 120.00369 * 180.02562 * 16 15 13 40 40 H 1.09005 * 109.63391 * 172.87622 * 21 5 4 41 41 H 1.09001 * 109.83568 * 52.34143 * 21 5 4 42 42 H 1.09005 * 109.36338 * 283.05868 * 22 2 1 43 43 H 1.09007 * 109.36012 * 42.77467 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1139 1.1433 0.0000 4 6 3.6061 1.3030 -0.0101 5 6 4.2794 -0.0076 0.4027 6 6 5.7826 0.0785 0.1310 7 6 4.0390 -0.2608 1.8687 8 8 3.4792 0.5760 2.5448 9 7 4.4463 -1.4172 2.4285 10 6 4.2131 -1.6631 3.8537 11 6 4.7673 -3.0383 4.2313 12 6 4.5243 -3.2949 5.7199 13 6 5.0696 -4.6497 6.0917 14 1 5.5425 -5.2660 5.3414 15 6 4.9647 -5.1026 7.3897 16 7 4.3892 -4.3520 8.3036 17 14 5.6412 -6.7817 7.8507 18 1 7.0997 -6.8208 7.5738 19 1 5.4053 -7.0307 9.2956 20 1 4.9570 -7.8281 7.0494 21 6 3.6702 -1.1473 -0.4240 22 6 2.2107 -1.3254 -0.0006 23 1 -0.3633 1.0277 -0.0005 24 1 -0.3633 -0.5139 -0.8901 25 1 -0.3634 -0.5138 0.8899 26 1 1.5089 2.0378 0.0082 27 1 3.9334 1.5772 -1.0130 28 1 3.8899 2.0906 0.6881 29 1 6.2091 0.9009 0.7053 30 1 6.2592 -0.8565 0.4255 31 1 5.9502 0.2523 -0.9319 32 1 4.8938 -2.0867 1.8877 33 1 4.7150 -0.8948 4.4419 34 1 3.1425 -1.6349 4.0569 35 1 4.2650 -3.8065 3.6431 36 1 5.8377 -3.0671 4.0280 37 1 5.0268 -2.5268 6.3078 38 1 3.4539 -3.2661 5.9236 39 1 4.3157 -4.6704 9.2169 40 1 4.2210 -2.0694 -0.2382 41 1 3.7164 -0.9003 -1.4847 42 1 2.1749 -1.7541 1.0010 43 1 1.7133 -1.9983 -0.6993 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597150458.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:11:14 Heat of formation + Delta-G solvation = -61.878103 kcal Electronic energy + Delta-G solvation = -20418.061012 eV Core-core repulsion = 17461.818669 eV Total energy + Delta-G solvation = -2956.242343 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.69263 -37.65935 -35.34124 -34.21637 -33.22462 -31.28977 -30.71269 -28.92386 -26.78684 -24.90220 -23.70517 -23.34883 -22.05155 -20.60756 -19.43184 -17.95513 -16.40082 -16.04009 -15.74301 -15.22810 -15.04350 -14.51058 -14.43397 -14.25736 -13.91427 -13.47267 -13.30606 -12.69967 -12.57770 -12.54155 -12.31054 -12.14999 -12.03743 -11.80447 -11.69265 -11.61192 -11.42526 -10.88161 -10.71349 -10.62459 -10.53053 -10.31496 -9.85352 -9.70600 -9.27528 -9.09948 -8.78129 -8.61552 -8.36784 -6.01470 -4.04775 2.28743 2.90923 3.31930 3.36686 3.38174 3.46810 4.37388 4.44198 4.53646 4.58737 4.88768 5.01908 5.12331 5.23559 5.27894 5.34104 5.46080 5.48287 5.55338 5.56671 5.61861 5.70428 5.76132 5.78109 5.80189 5.86006 5.95868 5.99202 6.03689 6.08357 6.18763 6.55263 6.61543 6.64111 6.87090 7.02214 7.03161 7.63565 7.76627 7.80220 7.97180 8.37981 8.51240 9.01719 9.59353 11.09787 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.029186 B = 0.003609 C = 0.003493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.129121 B = 7757.413120 C = 8013.442597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.132 4.132 3 C -0.142 4.142 4 C -0.065 4.065 5 C -0.083 4.083 6 C -0.140 4.140 7 C 0.522 3.478 8 O -0.538 6.538 9 N -0.727 5.727 10 C 0.117 3.883 11 C -0.120 4.120 12 C 0.024 3.976 13 C -0.523 4.523 14 H 0.055 0.945 15 C 0.057 3.943 16 N -0.894 5.894 17 Si 0.893 3.107 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.277 1.277 21 C -0.106 4.106 22 C -0.088 4.088 23 H 0.058 0.942 24 H 0.060 0.940 25 H 0.063 0.937 26 H 0.102 0.898 27 H 0.076 0.924 28 H 0.081 0.919 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.066 0.934 32 H 0.396 0.604 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.053 0.947 36 H 0.053 0.947 37 H 0.018 0.982 38 H 0.018 0.982 39 H 0.262 0.738 40 H 0.071 0.929 41 H 0.075 0.925 42 H 0.076 0.924 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.746 8.498 -20.888 22.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.133 4.133 3 C -0.160 4.160 4 C -0.102 4.102 5 C -0.086 4.086 6 C -0.197 4.197 7 C 0.307 3.693 8 O -0.414 6.414 9 N -0.378 5.378 10 C -0.005 4.005 11 C -0.158 4.158 12 C -0.014 4.014 13 C -0.561 4.561 14 H 0.073 0.927 15 C -0.144 4.144 16 N -0.533 5.533 17 Si 0.721 3.279 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.202 1.202 21 C -0.143 4.143 22 C -0.125 4.125 23 H 0.077 0.923 24 H 0.079 0.921 25 H 0.082 0.918 26 H 0.120 0.880 27 H 0.094 0.906 28 H 0.099 0.901 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.085 0.915 32 H 0.230 0.770 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.037 0.963 38 H 0.037 0.963 39 H 0.071 0.929 40 H 0.090 0.910 41 H 0.093 0.907 42 H 0.094 0.906 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -2.215 9.111 -20.174 22.247 hybrid contribution 0.496 -1.263 0.233 1.377 sum -1.720 7.848 -19.941 21.499 Atomic orbital electron populations 1.20914 0.92723 1.02052 1.01760 1.20736 0.95671 0.94786 1.02057 1.21769 0.95764 0.97040 1.01442 1.20298 0.92658 0.96073 1.01194 1.20930 0.97176 0.97751 0.92732 1.21827 0.92759 1.02797 1.02345 1.20301 0.78166 0.81779 0.89037 1.90680 1.41797 1.45075 1.63877 1.46204 1.60709 1.19033 1.11816 1.21603 1.00968 0.98829 0.79131 1.21878 0.99684 0.92897 1.01345 1.19022 0.97395 0.96840 0.88098 1.21169 1.38307 1.02114 0.94547 0.92717 1.25028 0.95342 0.97425 0.96621 1.69958 1.43663 1.37141 1.02533 0.86645 0.79478 0.84420 0.77365 1.20247 1.21261 1.20242 1.21680 0.95664 0.97285 0.99717 1.20421 0.94577 0.95254 1.02278 0.92329 0.92120 0.91826 0.88037 0.90575 0.90086 0.91909 0.91862 0.91459 0.77049 0.91957 0.91995 0.92808 0.92804 0.96315 0.96327 0.92870 0.91049 0.90659 0.90598 0.90847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.20 9.98 36.01 0.36 -0.84 16 2 C -0.13 -1.55 5.65 -100.94 -0.57 -2.12 16 3 C -0.14 -1.67 8.66 -35.89 -0.31 -1.99 16 4 C -0.07 -0.71 4.55 -28.18 -0.13 -0.84 16 5 C -0.08 -0.90 0.65 -155.44 -0.10 -1.00 16 6 C -0.14 -1.23 8.45 37.16 0.31 -0.91 16 7 C 0.52 7.79 4.73 -10.99 -0.05 7.74 16 8 O -0.54 -10.23 15.30 5.56 0.09 -10.15 16 9 N -0.73 -10.55 5.34 -60.29 -0.32 -10.87 16 10 C 0.12 2.11 5.67 -4.04 -0.02 2.08 16 11 C -0.12 -2.36 5.27 -26.73 -0.14 -2.50 16 12 C 0.02 0.62 4.97 -27.88 -0.14 0.48 16 13 C -0.52 -14.65 9.11 -34.44 -0.31 -14.97 16 14 H 0.05 1.47 7.74 -52.48 -0.41 1.06 16 15 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 16 N -0.89 -26.93 13.29 55.43 0.74 -26.20 16 17 Si 0.89 21.51 29.54 -169.99 -5.02 16.49 16 18 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 19 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 20 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 21 C -0.11 -0.98 4.72 -26.51 -0.13 -1.11 16 22 C -0.09 -0.96 5.29 -28.18 -0.15 -1.11 16 23 H 0.06 0.55 7.56 -51.93 -0.39 0.16 16 24 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 26 H 0.10 1.12 7.56 -52.49 -0.40 0.73 16 27 H 0.08 0.65 8.10 -51.93 -0.42 0.23 16 28 H 0.08 0.99 7.68 -51.93 -0.40 0.59 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.06 0.52 7.95 -51.93 -0.41 0.11 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.40 4.71 7.61 -40.82 -0.31 4.40 16 33 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 34 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 35 H 0.05 1.01 8.14 -51.92 -0.42 0.59 16 36 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 37 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 38 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 40 H 0.07 0.58 7.60 -51.93 -0.39 0.19 16 41 H 0.07 0.60 8.13 -51.93 -0.42 0.17 16 42 H 0.08 0.98 7.36 -51.93 -0.38 0.60 16 43 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 343.11 15.07 5.17 5.17 Total: -1.00 -32.19 343.11 -8.55 -40.74 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: -7.72 Total: 0.36 kcal Atomic # 6 Polarization: -14.06 SS G_CDS: -1.48 Total: -15.54 kcal Atomic # 7 Polarization: -37.48 SS G_CDS: 0.41 Total: -37.07 kcal Atomic # 8 Polarization: -10.23 SS G_CDS: 0.09 Total: -10.15 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -32.19 -8.55 -40.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597150458.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.137 kcal (2) G-P(sol) polarization free energy of solvation -32.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds