Wall clock time and date at job start Mon Mar 30 2020 08:11:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.29437 * 117.96003 * 2 1 4 4 C 1.50075 * 124.06989 * 180.46342 * 3 2 1 5 5 C 1.53018 * 110.14987 * 342.89307 * 4 3 2 6 6 C 1.53001 * 109.64259 * 169.11770 * 5 4 3 7 7 C 1.50697 * 109.64380 * 289.75244 * 5 4 3 8 8 O 1.21281 * 120.00045 * 354.46163 * 7 5 4 9 9 N 1.34776 * 120.00061 * 174.46982 * 7 5 4 10 10 C 1.46499 * 119.99945 * 179.97438 * 9 7 5 11 11 C 1.53002 * 109.46880 * 179.97438 * 10 9 7 12 12 C 1.52998 * 109.47087 * 179.97438 * 11 10 9 13 13 C 1.50699 * 109.47227 * 179.97438 * 12 11 10 14 14 H 1.08005 * 120.00084 * 0.02562 * 13 12 11 15 15 C 1.37874 * 120.00208 * 180.02562 * 13 12 11 16 16 N 1.31523 * 119.99996 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 120.00259 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47084 * 59.99540 * 17 15 13 19 19 H 1.48497 * 109.46940 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.46864 * 299.99701 * 17 15 13 21 21 C 1.53406 * 108.43491 * 49.43307 * 5 4 3 22 22 C 1.50062 * 117.96101 * 180.02562 * 2 1 3 23 23 H 1.09002 * 109.46971 * 0.02562 * 1 2 3 24 24 H 1.09005 * 109.46595 * 119.99893 * 1 2 3 25 25 H 1.08997 * 109.47501 * 239.99909 * 1 2 3 26 26 H 1.07996 * 117.96629 * 0.49316 * 3 2 1 27 27 H 1.09005 * 109.35495 * 103.10724 * 4 3 2 28 28 H 1.09001 * 109.35590 * 222.68236 * 4 3 2 29 29 H 1.09001 * 109.46824 * 59.99825 * 6 5 4 30 30 H 1.08996 * 109.47401 * 180.02562 * 6 5 4 31 31 H 1.08998 * 109.46998 * 300.00504 * 6 5 4 32 32 H 0.97006 * 120.00042 * 359.97438 * 9 7 5 33 33 H 1.08998 * 109.47208 * 299.99252 * 10 9 7 34 34 H 1.09002 * 109.47177 * 59.99931 * 10 9 7 35 35 H 1.09008 * 109.47221 * 300.00228 * 11 10 9 36 36 H 1.08999 * 109.47356 * 59.99749 * 11 10 9 37 37 H 1.08998 * 109.47386 * 300.00135 * 12 11 10 38 38 H 1.09002 * 109.47043 * 60.00198 * 12 11 10 39 39 H 0.96995 * 120.00369 * 180.02562 * 16 15 13 40 40 H 1.09005 * 109.63391 * 172.87622 * 21 5 4 41 41 H 1.09001 * 109.83568 * 52.34143 * 21 5 4 42 42 H 1.09005 * 109.36338 * 283.05868 * 22 2 1 43 43 H 1.09007 * 109.36012 * 42.77467 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1139 1.1433 0.0000 4 6 3.6061 1.3030 -0.0101 5 6 4.2794 -0.0076 0.4027 6 6 5.7826 0.0785 0.1310 7 6 4.0390 -0.2608 1.8687 8 8 3.4792 0.5760 2.5448 9 7 4.4463 -1.4172 2.4285 10 6 4.2131 -1.6631 3.8537 11 6 4.7673 -3.0383 4.2313 12 6 4.5243 -3.2949 5.7199 13 6 5.0696 -4.6497 6.0917 14 1 5.5425 -5.2660 5.3414 15 6 4.9647 -5.1026 7.3897 16 7 4.3892 -4.3520 8.3036 17 14 5.6412 -6.7817 7.8507 18 1 7.0997 -6.8208 7.5738 19 1 5.4053 -7.0307 9.2956 20 1 4.9570 -7.8281 7.0494 21 6 3.6702 -1.1473 -0.4240 22 6 2.2107 -1.3254 -0.0006 23 1 -0.3633 1.0277 -0.0005 24 1 -0.3633 -0.5139 -0.8901 25 1 -0.3634 -0.5138 0.8899 26 1 1.5089 2.0378 0.0082 27 1 3.9334 1.5772 -1.0130 28 1 3.8899 2.0906 0.6881 29 1 6.2091 0.9009 0.7053 30 1 6.2592 -0.8565 0.4255 31 1 5.9502 0.2523 -0.9319 32 1 4.8938 -2.0867 1.8877 33 1 4.7150 -0.8948 4.4419 34 1 3.1425 -1.6349 4.0569 35 1 4.2650 -3.8065 3.6431 36 1 5.8377 -3.0671 4.0280 37 1 5.0268 -2.5268 6.3078 38 1 3.4539 -3.2661 5.9236 39 1 4.3157 -4.6704 9.2169 40 1 4.2210 -2.0694 -0.2382 41 1 3.7164 -0.9003 -1.4847 42 1 2.1749 -1.7541 1.0010 43 1 1.7133 -1.9983 -0.6993 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597150458.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:11:13 Heat of formation + Delta-G solvation = -81.134404 kcal Electronic energy + Delta-G solvation = -20418.896028 eV Core-core repulsion = 17461.818669 eV Total energy + Delta-G solvation = -2957.077358 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.73692 -38.74539 -36.91221 -35.33541 -34.89751 -32.94945 -31.67320 -29.75046 -28.58322 -25.77925 -25.28780 -24.17116 -23.36324 -22.30938 -20.56754 -19.03537 -18.46824 -17.20473 -16.90426 -16.52757 -16.32178 -16.16942 -15.56701 -15.14316 -15.06585 -14.70489 -14.29530 -14.08948 -13.78057 -13.64207 -13.40817 -13.31217 -13.23559 -13.07522 -12.81301 -12.69937 -12.55709 -12.50014 -12.40919 -12.20596 -11.68104 -11.56335 -11.33518 -11.25505 -11.11382 -10.57666 -10.55415 -10.06624 -9.56074 -8.19710 -6.31778 1.40701 1.41571 1.44839 1.52722 1.73401 2.25117 2.43053 3.13897 3.54892 3.67554 3.74023 4.06779 4.11235 4.18732 4.21490 4.33934 4.42927 4.52384 4.53366 4.68270 4.72482 4.81537 4.83571 4.90835 4.92448 4.94745 4.97872 5.00900 5.06920 5.15100 5.17008 5.23621 5.27155 5.32140 5.46285 5.53599 5.68891 5.78621 5.82922 6.16624 6.21230 6.63784 6.85601 7.33512 7.38114 8.92305 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.029186 B = 0.003609 C = 0.003493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.129121 B = 7757.413120 C = 8013.442597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.146 4.146 3 C -0.156 4.156 4 C -0.066 4.066 5 C -0.076 4.076 6 C -0.138 4.138 7 C 0.518 3.482 8 O -0.585 6.585 9 N -0.715 5.715 10 C 0.132 3.868 11 C -0.100 4.100 12 C 0.024 3.976 13 C -0.542 4.542 14 H 0.068 0.932 15 C -0.003 4.003 16 N -0.936 5.936 17 Si 0.968 3.032 18 H -0.265 1.265 19 H -0.286 1.286 20 H -0.265 1.265 21 C -0.102 4.102 22 C -0.092 4.092 23 H 0.060 0.940 24 H 0.078 0.922 25 H 0.051 0.949 26 H 0.100 0.900 27 H 0.107 0.893 28 H 0.061 0.939 29 H 0.051 0.949 30 H 0.071 0.929 31 H 0.096 0.904 32 H 0.412 0.588 33 H 0.045 0.955 34 H 0.042 0.958 35 H 0.068 0.932 36 H 0.069 0.931 37 H -0.010 1.010 38 H -0.011 1.011 39 H 0.263 0.737 40 H 0.088 0.912 41 H 0.100 0.900 42 H 0.049 0.951 43 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.398 7.006 -23.573 24.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.146 4.146 3 C -0.174 4.174 4 C -0.103 4.103 5 C -0.079 4.079 6 C -0.195 4.195 7 C 0.306 3.694 8 O -0.465 6.465 9 N -0.367 5.367 10 C 0.008 3.992 11 C -0.138 4.138 12 C -0.014 4.014 13 C -0.580 4.580 14 H 0.086 0.914 15 C -0.201 4.201 16 N -0.576 5.576 17 Si 0.792 3.208 18 H -0.189 1.189 19 H -0.212 1.212 20 H -0.189 1.189 21 C -0.139 4.139 22 C -0.129 4.129 23 H 0.079 0.921 24 H 0.097 0.903 25 H 0.070 0.930 26 H 0.118 0.882 27 H 0.125 0.875 28 H 0.079 0.921 29 H 0.070 0.930 30 H 0.090 0.910 31 H 0.115 0.885 32 H 0.249 0.751 33 H 0.063 0.937 34 H 0.061 0.939 35 H 0.086 0.914 36 H 0.087 0.913 37 H 0.009 0.991 38 H 0.008 0.992 39 H 0.072 0.928 40 H 0.106 0.894 41 H 0.119 0.881 42 H 0.068 0.932 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -0.846 7.602 -22.904 24.147 hybrid contribution 0.018 -0.730 1.088 1.311 sum -0.829 6.871 -21.816 22.887 Atomic orbital electron populations 1.20941 0.92206 1.02367 1.02019 1.21005 0.96437 0.95250 1.01912 1.21960 0.96551 0.97207 1.01703 1.20354 0.92118 0.95548 1.02300 1.20962 0.99037 0.98510 0.89368 1.21865 0.90599 1.02930 1.04129 1.21172 0.76705 0.80743 0.90777 1.90661 1.43838 1.46552 1.65453 1.45986 1.60737 1.19718 1.10294 1.21156 0.99364 0.97410 0.81289 1.21582 1.00831 0.94039 0.97318 1.18939 0.95042 0.95580 0.91834 1.21651 1.38188 1.03004 0.95146 0.91423 1.26042 0.95555 1.01849 0.96640 1.70114 1.45120 1.39422 1.02978 0.85455 0.79231 0.79103 0.76981 1.18939 1.21196 1.18943 1.21746 0.94306 0.97208 1.00649 1.20471 0.96132 0.94948 1.01306 0.92067 0.90318 0.93018 0.88158 0.87540 0.92082 0.92994 0.90969 0.88537 0.75083 0.93697 0.93944 0.91365 0.91283 0.99133 0.99211 0.92814 0.89364 0.88111 0.93226 0.89041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.36 9.98 71.24 0.71 -1.65 16 2 C -0.15 -3.28 5.65 -15.09 -0.09 -3.37 16 3 C -0.16 -3.58 8.66 27.05 0.23 -3.34 16 4 C -0.07 -1.34 4.55 29.66 0.13 -1.21 16 5 C -0.08 -1.49 0.65 -52.79 -0.03 -1.52 16 6 C -0.14 -1.98 8.45 71.98 0.61 -1.37 16 7 C 0.52 15.28 4.73 87.66 0.41 15.70 16 8 O -0.59 -22.98 15.30 -3.03 -0.05 -23.03 16 9 N -0.72 -20.21 5.34 -463.06 -2.47 -22.68 16 10 C 0.13 4.84 5.67 86.38 0.49 5.33 16 11 C -0.10 -3.90 5.27 30.59 0.16 -3.74 16 12 C 0.02 1.25 4.97 29.85 0.15 1.40 16 13 C -0.54 -30.39 9.11 25.60 0.23 -30.16 16 14 H 0.07 3.54 7.74 -2.91 -0.02 3.51 16 15 C 0.00 -0.19 5.46 84.65 0.46 0.28 16 16 N -0.94 -57.66 13.29 21.45 0.28 -57.37 16 17 Si 0.97 43.79 29.54 68.60 2.03 45.81 16 18 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 19 H -0.29 -12.82 7.11 99.48 0.71 -12.11 16 20 H -0.26 -11.38 7.11 99.48 0.71 -10.68 16 21 C -0.10 -1.55 4.72 30.74 0.15 -1.41 16 22 C -0.09 -1.83 5.29 29.65 0.16 -1.68 16 23 H 0.06 1.15 7.56 -2.39 -0.02 1.13 16 24 H 0.08 1.25 8.14 -2.38 -0.02 1.23 16 25 H 0.05 1.13 8.14 -2.39 -0.02 1.12 16 26 H 0.10 2.23 7.56 -2.91 -0.02 2.20 16 27 H 0.11 1.49 8.10 -2.38 -0.02 1.47 16 28 H 0.06 1.49 7.68 -2.39 -0.02 1.47 16 29 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.07 0.92 7.95 -2.39 -0.02 0.90 16 31 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.41 8.86 7.61 -92.70 -0.71 8.16 16 33 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.07 2.48 8.14 -2.38 -0.02 2.46 16 36 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 37 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 38 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 39 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 40 H 0.09 1.07 7.60 -2.38 -0.02 1.05 16 41 H 0.10 1.11 8.13 -2.39 -0.02 1.09 16 42 H 0.05 1.26 7.36 -2.38 -0.02 1.24 16 43 H 0.09 1.47 8.14 -2.38 -0.02 1.45 16 Total: -1.00 -71.87 343.11 3.83 -68.04 By element: Atomic # 1 Polarization: 15.70 SS G_CDS: 0.26 Total: 15.96 kcal Atomic # 6 Polarization: -30.52 SS G_CDS: 3.78 Total: -26.74 kcal Atomic # 7 Polarization: -77.86 SS G_CDS: -2.19 Total: -80.05 kcal Atomic # 8 Polarization: -22.98 SS G_CDS: -0.05 Total: -23.03 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.81 kcal Total: -71.87 3.83 -68.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597150458.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.096 kcal (2) G-P(sol) polarization free energy of solvation -71.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds