Wall clock time and date at job start Mon Mar 30 2020 08:28:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53001 * 112.84826 * 2 1 4 4 C 1.53779 * 113.61299 * 228.69415 * 2 1 3 5 5 C 1.53784 * 87.08137 * 220.01779 * 4 2 1 6 6 C 1.53777 * 113.61551 * 131.19726 * 2 1 3 7 7 H 1.09000 * 113.61543 * 254.61303 * 6 2 1 8 8 C 1.50704 * 113.61432 * 25.43207 * 6 2 1 9 9 O 1.21288 * 120.00157 * 53.75680 * 8 6 2 10 10 N 1.34778 * 120.00263 * 233.76004 * 8 6 2 11 11 C 1.37102 * 119.99887 * 359.97438 * 10 8 6 12 12 H 1.07999 * 120.00116 * 232.54831 * 11 10 8 13 13 C 1.38952 * 119.99884 * 52.81777 * 11 10 8 14 14 N 1.31404 * 120.00270 * 28.16369 * 13 11 10 15 15 Si 1.86806 * 120.00011 * 208.16367 * 13 11 10 16 16 H 1.48506 * 109.46778 * 59.99996 * 15 13 11 17 17 H 1.48495 * 109.46946 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.47050 * 300.00240 * 15 13 11 19 19 C 1.46491 * 120.00320 * 180.02562 * 10 8 6 20 20 C 1.54269 * 110.03382 * 232.20677 * 19 10 8 21 21 C 1.54883 * 104.20074 * 217.10523 * 20 19 10 22 22 C 1.54894 * 102.74849 * 37.93986 * 21 20 19 23 23 C 1.53875 * 110.03415 * 115.04176 * 19 10 8 24 24 H 1.08996 * 109.47032 * 272.84872 * 1 2 3 25 25 H 1.08992 * 109.46959 * 32.85023 * 1 2 3 26 26 H 1.08995 * 109.46792 * 152.84957 * 1 2 3 27 27 H 1.09003 * 109.46862 * 191.19448 * 3 2 1 28 28 H 1.08997 * 109.47311 * 311.19519 * 3 2 1 29 29 H 1.09003 * 109.46904 * 71.19651 * 3 2 1 30 30 H 1.08998 * 113.61409 * 334.56884 * 4 2 1 31 31 H 1.09000 * 113.61474 * 105.38797 * 4 2 1 32 32 H 1.08996 * 113.61314 * 270.88855 * 5 4 2 33 33 H 1.08995 * 113.61127 * 139.98181 * 5 4 2 34 34 H 0.96995 * 120.00602 * 182.68446 * 14 13 11 35 35 H 1.09000 * 110.01615 * 353.64728 * 19 10 8 36 36 H 1.09008 * 110.48423 * 335.78596 * 20 19 10 37 37 H 1.09000 * 110.48860 * 98.41898 * 20 19 10 38 38 H 1.09005 * 110.75115 * 279.62931 * 21 20 19 39 39 H 1.08998 * 110.76028 * 156.25221 * 21 20 19 40 40 H 1.08998 * 110.48750 * 203.38422 * 22 21 20 41 41 H 1.08991 * 110.59685 * 80.79181 * 22 21 20 42 42 H 1.09001 * 110.02874 * 238.56712 * 23 19 10 43 43 H 1.08993 * 110.03274 * 359.94738 * 23 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1242 1.4100 0.0000 4 6 2.1460 -0.9301 -1.0585 5 6 3.1924 -1.3136 0.0012 6 6 2.1461 -0.9280 1.0602 7 1 2.5638 -0.3971 1.9156 8 6 1.2453 -2.0676 1.4617 9 8 0.7824 -2.8021 0.6148 10 7 0.9541 -2.2705 2.7619 11 6 1.4777 -1.4405 3.7193 12 1 2.0075 -1.8566 4.5635 13 6 1.3220 -0.0644 3.6064 14 7 0.2815 0.4294 2.9737 15 14 2.5917 1.0838 4.3541 16 1 3.9184 0.8213 3.7407 17 1 2.1972 2.4922 4.0979 18 1 2.6686 0.8503 5.8187 19 6 0.0789 -3.3786 3.1522 20 6 -1.0640 -2.8588 4.0486 21 6 -1.2731 -3.9863 5.0897 22 6 0.1728 -4.4668 5.3683 23 6 0.8653 -4.4009 3.9914 24 1 -0.3633 0.0511 1.0264 25 1 -0.3633 0.8633 -0.5574 26 1 -0.3633 -0.9144 -0.4689 27 1 3.1943 1.3533 -0.1995 28 1 1.6415 2.0076 -0.7733 29 1 1.9600 1.8734 0.9729 30 1 1.4945 -1.7548 -1.3473 31 1 2.5638 -0.4007 -1.9149 32 1 4.0711 -0.6686 0.0006 33 1 3.4444 -2.3740 0.0022 34 1 0.1927 1.3887 2.8609 35 1 -0.3313 -3.8605 2.2648 36 1 -0.7701 -1.9328 4.5430 37 1 -1.9703 -2.7080 3.4622 38 1 -1.8741 -4.7930 4.6698 39 1 -1.7314 -3.5939 5.9974 40 1 0.1690 -5.4896 5.7449 41 1 0.6678 -3.8023 6.0764 42 1 0.8359 -5.3792 3.5116 43 1 1.8983 -4.0732 4.1074 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597276304.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:28:12 Heat of formation + Delta-G solvation = -24.617806 kcal Electronic energy + Delta-G solvation = -22447.705575 eV Core-core repulsion = 19493.078960 eV Total energy + Delta-G solvation = -2954.626615 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.89736 -37.93714 -35.85338 -34.08759 -31.38883 -29.86999 -27.91056 -27.40269 -26.60795 -25.29830 -24.40546 -21.79376 -20.13668 -19.90421 -19.25101 -17.59967 -16.11454 -15.65338 -15.17565 -14.72304 -14.45602 -14.07803 -13.76052 -13.63661 -13.12918 -12.63317 -12.60404 -12.26829 -12.00238 -11.72783 -11.56914 -11.28416 -11.12831 -10.99529 -10.77631 -10.64108 -10.57536 -10.47588 -10.39804 -10.31566 -10.14389 -9.99640 -9.95900 -9.60018 -9.24176 -9.14699 -8.47705 -8.10308 -7.27826 -6.36242 -4.10630 3.12397 3.20998 3.24130 4.01553 4.14914 4.79512 4.85506 5.36467 5.38609 5.40069 5.48693 5.53948 5.73098 5.79519 6.07228 6.11681 6.17681 6.25180 6.30473 6.34208 6.35555 6.39274 6.46148 6.53998 6.55821 6.57360 6.58713 6.64062 6.71909 6.77235 6.81095 6.93827 6.96629 7.04607 7.15810 7.17997 7.35297 7.42395 7.44143 7.74288 8.08690 8.70879 8.99553 9.69541 10.11684 10.63068 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.018348 B = 0.009654 C = 0.007626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1525.644666 B = 2899.784012 C = 3670.995626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.054 4.054 3 C -0.121 4.121 4 C -0.131 4.131 5 C -0.131 4.131 6 C -0.101 4.101 7 H 0.100 0.900 8 C 0.533 3.467 9 O -0.607 6.607 10 N -0.442 5.442 11 C -0.350 4.350 12 H 0.078 0.922 13 C 0.068 3.932 14 N -0.831 5.831 15 Si 0.884 3.116 16 H -0.269 1.269 17 H -0.283 1.283 18 H -0.273 1.273 19 C 0.132 3.868 20 C -0.119 4.119 21 C -0.123 4.123 22 C -0.116 4.116 23 C -0.127 4.127 24 H 0.109 0.891 25 H 0.027 0.973 26 H 0.048 0.952 27 H 0.047 0.953 28 H 0.049 0.951 29 H 0.055 0.945 30 H 0.090 0.910 31 H 0.048 0.952 32 H 0.071 0.929 33 H 0.060 0.940 34 H 0.269 0.731 35 H 0.075 0.925 36 H 0.094 0.906 37 H 0.049 0.951 38 H 0.055 0.945 39 H 0.056 0.944 40 H 0.050 0.950 41 H 0.064 0.936 42 H 0.050 0.950 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.665 -1.032 0.224 1.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.055 4.055 3 C -0.179 4.179 4 C -0.168 4.168 5 C -0.169 4.169 6 C -0.122 4.122 7 H 0.118 0.882 8 C 0.323 3.677 9 O -0.493 6.493 10 N -0.161 5.161 11 C -0.478 4.478 12 H 0.096 0.904 13 C -0.141 4.141 14 N -0.464 5.464 15 Si 0.710 3.290 16 H -0.194 1.194 17 H -0.208 1.208 18 H -0.198 1.198 19 C 0.028 3.972 20 C -0.157 4.157 21 C -0.161 4.161 22 C -0.154 4.154 23 C -0.166 4.166 24 H 0.127 0.873 25 H 0.046 0.954 26 H 0.067 0.933 27 H 0.066 0.934 28 H 0.068 0.932 29 H 0.074 0.926 30 H 0.109 0.891 31 H 0.067 0.933 32 H 0.090 0.910 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.093 0.907 36 H 0.112 0.888 37 H 0.068 0.932 38 H 0.074 0.926 39 H 0.075 0.925 40 H 0.069 0.931 41 H 0.082 0.918 42 H 0.069 0.931 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 1.292 -1.225 -0.188 1.790 hybrid contribution 0.623 0.837 0.459 1.140 sum 1.915 -0.388 0.272 1.973 Atomic orbital electron populations 1.22120 0.93878 0.99244 1.05790 1.21381 0.96054 0.92942 0.95124 1.21562 0.99427 0.95536 1.01347 1.23162 0.98392 0.99647 0.95583 1.22735 0.96322 1.00590 0.97252 1.22295 0.96083 0.96353 0.97439 0.88207 1.19661 0.81187 0.84395 0.82451 1.90454 1.57389 1.50405 1.51018 1.43385 1.41476 1.26371 1.04916 1.18912 1.34770 0.86722 1.07380 0.90391 1.25367 0.94673 0.98153 0.95955 1.69890 1.23364 1.13655 1.39458 0.86725 0.82553 0.79673 0.80090 1.19425 1.20782 1.19779 1.21555 0.90456 0.88691 0.96462 1.22558 0.97227 0.99330 0.96556 1.22449 0.96351 0.98402 0.98936 1.22252 0.96070 0.99533 0.97517 1.22429 1.00517 0.98340 0.95322 0.87269 0.95375 0.93279 0.93383 0.93185 0.92554 0.89116 0.93344 0.91039 0.92084 0.92016 0.90711 0.88771 0.93229 0.92650 0.92484 0.93096 0.91764 0.93091 0.91317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.34 8.28 37.16 0.31 -3.03 16 2 C -0.05 -1.11 1.33 -153.70 -0.20 -1.31 16 3 C -0.12 -2.17 9.02 37.16 0.34 -1.84 16 4 C -0.13 -2.52 6.73 -25.92 -0.17 -2.70 16 5 C -0.13 -2.57 7.21 -25.92 -0.19 -2.76 16 6 C -0.10 -2.25 2.47 -90.96 -0.22 -2.47 16 7 H 0.10 2.33 4.31 -51.93 -0.22 2.11 16 8 C 0.53 13.20 5.37 -10.98 -0.06 13.14 16 9 O -0.61 -16.07 13.60 5.55 0.08 -16.00 16 10 N -0.44 -10.66 2.34 -106.54 -0.25 -10.91 16 11 C -0.35 -8.43 6.54 -14.93 -0.10 -8.53 16 12 H 0.08 1.88 7.62 -52.49 -0.40 1.48 16 13 C 0.07 1.60 3.12 -17.47 -0.05 1.54 16 14 N -0.83 -20.12 10.25 55.50 0.57 -19.55 16 15 Si 0.88 18.61 28.69 -169.99 -4.88 13.74 16 16 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 17 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 18 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 19 C 0.13 2.90 3.28 -66.81 -0.22 2.68 16 20 C -0.12 -2.41 6.39 -25.07 -0.16 -2.57 16 21 C -0.12 -2.04 6.91 -24.74 -0.17 -2.21 16 22 C -0.12 -1.90 6.83 -25.07 -0.17 -2.07 16 23 C -0.13 -2.41 6.31 -25.61 -0.16 -2.57 16 24 H 0.11 2.65 4.99 -51.93 -0.26 2.39 16 25 H 0.03 0.54 7.91 -51.93 -0.41 0.13 16 26 H 0.05 1.13 6.85 -51.93 -0.36 0.77 16 27 H 0.05 0.78 7.35 -51.93 -0.38 0.40 16 28 H 0.05 0.80 8.03 -51.93 -0.42 0.39 16 29 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.09 1.93 6.65 -51.93 -0.35 1.58 16 31 H 0.05 0.81 8.10 -51.93 -0.42 0.39 16 32 H 0.07 1.24 7.66 -51.93 -0.40 0.84 16 33 H 0.06 1.22 8.09 -51.93 -0.42 0.80 16 34 H 0.27 6.31 8.31 -40.82 -0.34 5.97 16 35 H 0.07 1.76 6.97 -51.93 -0.36 1.39 16 36 H 0.09 2.16 6.81 -51.92 -0.35 1.80 16 37 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 40 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 42 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 43 H 0.07 1.37 7.30 -51.93 -0.38 0.99 16 LS Contribution 319.96 15.07 4.82 4.82 Total: -1.00 -25.66 319.96 -8.12 -33.78 By element: Atomic # 1 Polarization: 16.04 SS G_CDS: -7.22 Total: 8.82 kcal Atomic # 6 Polarization: -13.46 SS G_CDS: -1.24 Total: -14.70 kcal Atomic # 7 Polarization: -30.78 SS G_CDS: 0.32 Total: -30.46 kcal Atomic # 8 Polarization: -16.07 SS G_CDS: 0.08 Total: -16.00 kcal Atomic # 14 Polarization: 18.61 SS G_CDS: -4.88 Total: 13.74 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -25.66 -8.12 -33.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597276304.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.162 kcal (2) G-P(sol) polarization free energy of solvation -25.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds