Wall clock time and date at job start Mon Mar 30 2020 06:32:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46503 * 109.47222 * 2 1 4 4 N 1.40064 * 126.05740 * 269.99822 * 3 2 1 5 5 C 1.30824 * 108.37020 * 179.97438 * 4 3 2 6 6 C 1.50701 * 125.82961 * 180.02562 * 5 4 3 7 7 C 1.40250 * 108.33532 * 359.74976 * 5 4 3 8 8 N 1.40770 * 126.08142 * 180.30225 * 7 5 4 9 9 C 1.34773 * 119.99851 * 72.16658 * 8 7 5 10 10 O 1.21305 * 120.00549 * 4.48580 * 9 8 7 11 11 C 1.50702 * 119.99726 * 184.48348 * 9 8 7 12 12 H 1.09001 * 109.47061 * 299.99811 * 11 9 8 13 13 C 1.52995 * 109.47085 * 60.00325 * 11 9 8 14 14 C 1.50705 * 109.47204 * 180.02562 * 11 9 8 15 15 H 1.08006 * 119.99629 * 359.97438 * 14 11 9 16 16 C 1.37875 * 120.00230 * 180.02562 * 14 11 9 17 17 N 1.31509 * 120.00004 * 0.02562 * 16 14 11 18 18 Si 1.86800 * 120.00021 * 180.02562 * 16 14 11 19 19 H 1.48497 * 109.47030 * 59.99609 * 18 16 14 20 20 H 1.48500 * 109.47191 * 180.02562 * 18 16 14 21 21 H 1.48504 * 109.46983 * 300.00204 * 18 16 14 22 22 C 1.35751 * 107.83985 * 0.41391 * 7 5 4 23 23 C 1.50700 * 126.22038 * 179.84439 * 22 7 5 24 24 H 1.08996 * 109.47025 * 300.00045 * 1 2 3 25 25 H 1.09001 * 109.46890 * 59.99676 * 1 2 3 26 26 H 1.09004 * 109.47501 * 179.97438 * 1 2 3 27 27 H 1.09008 * 109.47000 * 240.00357 * 2 1 3 28 28 H 1.09000 * 109.47395 * 120.00461 * 2 1 3 29 29 H 1.09003 * 109.47460 * 95.66162 * 6 5 4 30 30 H 1.09011 * 109.46929 * 215.65940 * 6 5 4 31 31 H 1.08999 * 109.47260 * 335.65677 * 6 5 4 32 32 H 0.96996 * 119.99749 * 252.16637 * 8 7 5 33 33 H 1.09001 * 109.47591 * 59.99810 * 13 11 9 34 34 H 1.09009 * 109.47142 * 179.97438 * 13 11 9 35 35 H 1.09004 * 109.47229 * 299.99685 * 13 11 9 36 36 H 0.96995 * 120.00289 * 179.97438 * 17 16 14 37 37 H 1.09003 * 109.47539 * 269.72397 * 23 22 7 38 38 H 1.09002 * 109.47460 * 149.72097 * 23 22 7 39 39 H 1.08998 * 109.47164 * 29.72287 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2932 2.1585 -1.1323 5 6 2.7081 3.3338 -0.7349 6 6 3.1114 4.4764 -1.6309 7 6 2.7076 3.3508 0.6675 8 7 3.0819 4.4350 1.4836 9 6 2.2813 5.5151 1.5781 10 8 1.2014 5.5200 1.0257 11 6 2.7279 6.7169 2.3703 12 1 2.9003 6.4255 3.4064 13 6 4.0239 7.2685 1.7731 14 6 1.6589 7.7780 2.3188 15 1 0.7476 7.6000 1.7672 16 6 1.8448 8.9763 2.9749 17 7 2.9552 9.1935 3.6453 18 14 0.5195 10.2912 2.9116 19 1 -0.7376 9.7553 3.4926 20 1 0.9601 11.4759 3.6911 21 1 0.2828 10.6879 1.5002 22 6 2.2842 2.1350 1.0980 23 6 2.1311 1.7023 2.5335 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 2.2644 5.1492 -1.7653 30 1 3.9390 5.0206 -1.1756 31 1 3.4226 4.0860 -2.5998 32 1 3.9159 4.4047 1.9779 33 1 3.8514 7.5600 0.7370 34 1 4.3466 8.1381 2.3458 35 1 4.7969 6.5009 1.8107 36 1 3.0861 10.0366 4.1066 37 1 3.0634 1.2562 2.8800 38 1 1.3277 0.9694 2.6084 39 1 1.8915 2.5683 3.1504 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597305540.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:16 Heat of formation + Delta-G solvation = 23.997214 kcal Electronic energy + Delta-G solvation = -20485.107030 eV Core-core repulsion = 17429.048177 eV Total energy + Delta-G solvation = -3056.058853 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.16871 -38.47295 -35.00155 -33.68409 -33.64621 -31.90978 -30.56863 -29.78652 -27.22334 -26.48509 -25.08899 -23.36017 -22.41230 -20.15650 -19.44907 -18.97614 -17.02830 -16.15140 -15.95139 -15.40693 -14.98591 -14.39427 -14.26009 -14.00805 -13.50334 -13.21613 -13.11298 -12.91542 -12.87358 -12.42753 -12.28827 -12.16119 -11.78464 -11.69483 -11.51057 -11.43418 -10.96225 -10.71260 -10.65512 -10.57124 -10.20570 -9.93207 -8.95224 -8.85670 -8.80048 -8.57364 -8.29205 -7.83062 -5.99844 -4.02683 1.96130 2.52423 2.93208 3.38762 3.40990 3.47008 3.80945 4.08163 4.47999 4.54745 4.73494 4.83891 4.99328 5.09332 5.10341 5.33470 5.39570 5.47545 5.54956 5.59378 5.82822 5.95735 5.97416 6.06589 6.17910 6.28155 6.32937 6.67239 6.70943 6.87676 6.97372 7.13068 7.47926 7.55363 7.79759 7.93619 8.03644 8.20181 8.51414 9.06222 9.35427 9.63112 11.07670 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.029128 B = 0.004783 C = 0.004676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.044851 B = 5852.405035 C = 5986.955169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.137 3.863 3 N -0.376 5.376 4 N -0.298 5.298 5 C 0.088 3.912 6 C -0.070 4.070 7 C 0.008 3.992 8 N -0.671 5.671 9 C 0.522 3.478 10 O -0.533 6.533 11 C 0.032 3.968 12 H 0.052 0.948 13 C -0.132 4.132 14 C -0.499 4.499 15 H 0.073 0.927 16 C 0.059 3.941 17 N -0.897 5.897 18 Si 0.899 3.101 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.277 1.277 22 C 0.074 3.926 23 C -0.087 4.087 24 H 0.062 0.938 25 H 0.065 0.935 26 H 0.074 0.926 27 H 0.092 0.908 28 H 0.089 0.911 29 H 0.080 0.920 30 H 0.076 0.924 31 H 0.067 0.933 32 H 0.399 0.601 33 H 0.031 0.969 34 H 0.093 0.907 35 H 0.013 0.987 36 H 0.261 0.739 37 H 0.077 0.923 38 H 0.068 0.932 39 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.231 -16.956 -3.576 17.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.015 3.985 3 N -0.160 5.160 4 N -0.120 5.120 5 C -0.080 4.080 6 C -0.129 4.129 7 C -0.095 4.095 8 N -0.322 5.322 9 C 0.312 3.688 10 O -0.407 6.407 11 C 0.011 3.989 12 H 0.069 0.931 13 C -0.190 4.190 14 C -0.538 4.538 15 H 0.091 0.909 16 C -0.142 4.142 17 N -0.537 5.537 18 Si 0.727 3.273 19 H -0.203 1.203 20 H -0.214 1.214 21 H -0.202 1.202 22 C -0.054 4.054 23 C -0.145 4.145 24 H 0.081 0.919 25 H 0.084 0.916 26 H 0.093 0.907 27 H 0.110 0.890 28 H 0.107 0.893 29 H 0.099 0.901 30 H 0.095 0.905 31 H 0.086 0.914 32 H 0.235 0.765 33 H 0.050 0.950 34 H 0.111 0.889 35 H 0.032 0.968 36 H 0.070 0.930 37 H 0.095 0.905 38 H 0.087 0.913 39 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 1.199 -17.645 -4.863 18.342 hybrid contribution -0.149 1.106 0.934 1.455 sum 1.050 -16.540 -3.929 17.032 Atomic orbital electron populations 1.22210 0.94545 1.02665 1.03571 1.21541 0.95062 0.77965 1.03918 1.48296 1.52953 1.11683 1.03103 1.77217 1.23292 1.03808 1.07667 1.22490 0.97824 0.93875 0.93771 1.20145 1.02314 0.93459 0.96977 1.17074 1.13486 0.89375 0.89606 1.43297 1.24740 1.15814 1.48383 1.22135 0.83409 0.83241 0.80030 1.90544 1.22145 1.81418 1.46616 1.18854 0.95963 0.89323 0.94768 0.93058 1.21742 0.95398 1.01639 1.00219 1.21102 1.02712 0.98404 1.31572 0.90895 1.24928 0.95790 0.98295 0.95144 1.69855 1.25074 1.25046 1.33684 0.86528 0.81949 0.80626 0.78156 1.20260 1.21406 1.20207 1.21098 1.00578 0.93060 0.90647 1.20385 1.02269 1.02781 0.89114 0.91915 0.91558 0.90737 0.88963 0.89253 0.90106 0.90483 0.91409 0.76537 0.94960 0.88883 0.96808 0.92951 0.90462 0.91347 0.89432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.58 10.24 37.16 0.38 -1.20 16 2 C 0.14 1.33 6.81 -4.04 -0.03 1.30 16 3 N -0.38 -5.50 3.64 -56.82 -0.21 -5.70 16 4 N -0.30 -5.15 12.56 33.74 0.42 -4.72 16 5 C 0.09 1.59 7.22 -82.27 -0.59 1.00 16 6 C -0.07 -1.14 10.42 36.01 0.38 -0.76 16 7 C 0.01 0.14 5.71 -83.88 -0.48 -0.33 16 8 N -0.67 -12.28 5.23 -10.04 -0.05 -12.33 16 9 C 0.52 11.98 7.12 -10.99 -0.08 11.91 16 10 O -0.53 -14.27 15.44 5.54 0.09 -14.18 16 11 C 0.03 0.79 2.63 -92.92 -0.24 0.55 16 12 H 0.05 1.30 8.14 -51.93 -0.42 0.87 16 13 C -0.13 -2.99 8.87 37.15 0.33 -2.66 16 14 C -0.50 -14.13 8.38 -34.44 -0.29 -14.42 16 15 H 0.07 2.19 6.75 -52.48 -0.35 1.84 16 16 C 0.06 1.63 5.30 -17.82 -0.09 1.54 16 17 N -0.90 -25.02 11.32 55.43 0.63 -24.40 16 18 Si 0.90 21.88 29.54 -169.99 -5.02 16.86 16 19 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 20 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 21 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 22 C 0.07 1.13 6.98 -81.72 -0.57 0.56 16 23 C -0.09 -1.00 9.87 36.01 0.36 -0.65 16 24 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 25 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 26 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.09 0.80 8.14 -51.92 -0.42 0.38 16 28 H 0.09 0.64 7.69 -51.93 -0.40 0.24 16 29 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 30 H 0.08 1.20 8.14 -51.92 -0.42 0.78 16 31 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.40 6.22 8.39 -40.82 -0.34 5.87 16 33 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.09 2.33 6.07 -51.92 -0.32 2.01 16 35 H 0.01 0.25 7.67 -51.93 -0.40 -0.15 16 36 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 37 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 38 H 0.07 0.65 7.76 -51.93 -0.40 0.24 16 39 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 LS Contribution 330.80 15.07 4.99 4.99 Total: -1.00 -33.58 330.80 -6.09 -39.68 By element: Atomic # 1 Polarization: 8.99 SS G_CDS: -6.00 Total: 2.99 kcal Atomic # 6 Polarization: -2.23 SS G_CDS: -0.94 Total: -3.17 kcal Atomic # 7 Polarization: -47.95 SS G_CDS: 0.79 Total: -47.16 kcal Atomic # 8 Polarization: -14.27 SS G_CDS: 0.09 Total: -14.18 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -33.58 -6.09 -39.68 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597305540.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.674 kcal (2) G-P(sol) polarization free energy of solvation -33.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.677 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds