Wall clock time and date at job start Mon Mar 30 2020 06:32:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46503 * 109.47222 * 2 1 4 4 N 1.40064 * 126.05740 * 269.99822 * 3 2 1 5 5 C 1.30824 * 108.37020 * 179.97438 * 4 3 2 6 6 C 1.50701 * 125.82961 * 180.02562 * 5 4 3 7 7 C 1.40250 * 108.33532 * 359.74976 * 5 4 3 8 8 N 1.40770 * 126.08142 * 180.30225 * 7 5 4 9 9 C 1.34773 * 119.99851 * 72.16658 * 8 7 5 10 10 O 1.21305 * 120.00549 * 4.48580 * 9 8 7 11 11 C 1.50702 * 119.99726 * 184.48348 * 9 8 7 12 12 H 1.09001 * 109.47061 * 299.99811 * 11 9 8 13 13 C 1.52995 * 109.47085 * 60.00325 * 11 9 8 14 14 C 1.50705 * 109.47204 * 180.02562 * 11 9 8 15 15 H 1.08006 * 119.99629 * 359.97438 * 14 11 9 16 16 C 1.37875 * 120.00230 * 180.02562 * 14 11 9 17 17 N 1.31509 * 120.00004 * 0.02562 * 16 14 11 18 18 Si 1.86800 * 120.00021 * 180.02562 * 16 14 11 19 19 H 1.48497 * 109.47030 * 59.99609 * 18 16 14 20 20 H 1.48500 * 109.47191 * 180.02562 * 18 16 14 21 21 H 1.48504 * 109.46983 * 300.00204 * 18 16 14 22 22 C 1.35751 * 107.83985 * 0.41391 * 7 5 4 23 23 C 1.50700 * 126.22038 * 179.84439 * 22 7 5 24 24 H 1.08996 * 109.47025 * 300.00045 * 1 2 3 25 25 H 1.09001 * 109.46890 * 59.99676 * 1 2 3 26 26 H 1.09004 * 109.47501 * 179.97438 * 1 2 3 27 27 H 1.09008 * 109.47000 * 240.00357 * 2 1 3 28 28 H 1.09000 * 109.47395 * 120.00461 * 2 1 3 29 29 H 1.09003 * 109.47460 * 95.66162 * 6 5 4 30 30 H 1.09011 * 109.46929 * 215.65940 * 6 5 4 31 31 H 1.08999 * 109.47260 * 335.65677 * 6 5 4 32 32 H 0.96996 * 119.99749 * 252.16637 * 8 7 5 33 33 H 1.09001 * 109.47591 * 59.99810 * 13 11 9 34 34 H 1.09009 * 109.47142 * 179.97438 * 13 11 9 35 35 H 1.09004 * 109.47229 * 299.99685 * 13 11 9 36 36 H 0.96995 * 120.00289 * 179.97438 * 17 16 14 37 37 H 1.09003 * 109.47539 * 269.72397 * 23 22 7 38 38 H 1.09002 * 109.47460 * 149.72097 * 23 22 7 39 39 H 1.08998 * 109.47164 * 29.72287 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2932 2.1585 -1.1323 5 6 2.7081 3.3338 -0.7349 6 6 3.1114 4.4764 -1.6309 7 6 2.7076 3.3508 0.6675 8 7 3.0819 4.4350 1.4836 9 6 2.2813 5.5151 1.5781 10 8 1.2014 5.5200 1.0257 11 6 2.7279 6.7169 2.3703 12 1 2.9003 6.4255 3.4064 13 6 4.0239 7.2685 1.7731 14 6 1.6589 7.7780 2.3188 15 1 0.7476 7.6000 1.7672 16 6 1.8448 8.9763 2.9749 17 7 2.9552 9.1935 3.6453 18 14 0.5195 10.2912 2.9116 19 1 -0.7376 9.7553 3.4926 20 1 0.9601 11.4759 3.6911 21 1 0.2828 10.6879 1.5002 22 6 2.2842 2.1350 1.0980 23 6 2.1311 1.7023 2.5335 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 2.2644 5.1492 -1.7653 30 1 3.9390 5.0206 -1.1756 31 1 3.4226 4.0860 -2.5998 32 1 3.9159 4.4047 1.9779 33 1 3.8514 7.5600 0.7370 34 1 4.3466 8.1381 2.3458 35 1 4.7969 6.5009 1.8107 36 1 3.0861 10.0366 4.1066 37 1 3.0634 1.2562 2.8800 38 1 1.3277 0.9694 2.6084 39 1 1.8915 2.5683 3.1504 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597305540.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:15 Heat of formation + Delta-G solvation = 1.626730 kcal Electronic energy + Delta-G solvation = -20486.077087 eV Core-core repulsion = 17429.048177 eV Total energy + Delta-G solvation = -3057.028910 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.41533 -40.22616 -36.19142 -35.69892 -35.08912 -33.06875 -32.34172 -31.08931 -28.35804 -27.70303 -27.13667 -24.78847 -23.72634 -21.69588 -20.80134 -20.33426 -18.53435 -18.04817 -17.55135 -16.78212 -16.35618 -16.11460 -15.73168 -15.23630 -14.81014 -14.65298 -14.39506 -14.30520 -14.06612 -13.85260 -13.44333 -13.38571 -13.08641 -12.94039 -12.89298 -12.72245 -12.64434 -12.54655 -12.27700 -12.17015 -11.98395 -11.80509 -11.01525 -10.60368 -10.39028 -10.21228 -10.00539 -9.17930 -8.11733 -6.21492 0.76071 1.42410 1.43939 1.45234 1.52942 1.58529 2.02419 2.42211 2.66225 3.17851 3.58711 3.67815 3.97636 4.08276 4.13242 4.35162 4.40116 4.47378 4.65335 4.67421 4.70078 4.73353 4.79859 4.85508 4.98049 5.00862 5.01509 5.07438 5.12025 5.20719 5.37211 5.54869 5.77131 5.91954 6.00963 6.17119 6.26092 6.67165 6.78836 6.90779 7.44153 7.65615 8.93670 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.029128 B = 0.004783 C = 0.004676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.044851 B = 5852.405035 C = 5986.955169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.124 3.876 3 N -0.369 5.369 4 N -0.318 5.318 5 C 0.067 3.933 6 C -0.067 4.067 7 C -0.037 4.037 8 N -0.645 5.645 9 C 0.528 3.472 10 O -0.579 6.579 11 C 0.029 3.971 12 H 0.045 0.955 13 C -0.119 4.119 14 C -0.527 4.527 15 H 0.045 0.955 16 C 0.023 3.977 17 N -0.909 5.909 18 Si 0.952 3.048 19 H -0.278 1.278 20 H -0.274 1.274 21 H -0.278 1.278 22 C 0.087 3.913 23 C -0.086 4.086 24 H 0.052 0.948 25 H 0.039 0.961 26 H 0.109 0.891 27 H 0.105 0.895 28 H 0.126 0.874 29 H 0.057 0.943 30 H 0.078 0.922 31 H 0.088 0.912 32 H 0.413 0.587 33 H 0.022 0.978 34 H 0.071 0.929 35 H 0.052 0.948 36 H 0.265 0.735 37 H 0.109 0.891 38 H 0.093 0.907 39 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.723 -18.963 -2.915 19.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.005 3.995 3 N -0.153 5.153 4 N -0.141 5.141 5 C -0.100 4.100 6 C -0.125 4.125 7 C -0.141 4.141 8 N -0.296 5.296 9 C 0.319 3.681 10 O -0.457 6.457 11 C 0.008 3.992 12 H 0.063 0.937 13 C -0.177 4.177 14 C -0.565 4.565 15 H 0.064 0.936 16 C -0.176 4.176 17 N -0.548 5.548 18 Si 0.778 3.222 19 H -0.203 1.203 20 H -0.198 1.198 21 H -0.204 1.204 22 C -0.043 4.043 23 C -0.144 4.144 24 H 0.071 0.929 25 H 0.059 0.941 26 H 0.128 0.872 27 H 0.123 0.877 28 H 0.144 0.856 29 H 0.076 0.924 30 H 0.097 0.903 31 H 0.107 0.893 32 H 0.251 0.749 33 H 0.041 0.959 34 H 0.090 0.910 35 H 0.071 0.929 36 H 0.074 0.926 37 H 0.127 0.873 38 H 0.112 0.888 39 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 1.736 -19.698 -4.203 20.216 hybrid contribution -0.313 1.578 0.737 1.769 sum 1.422 -18.121 -3.466 18.504 Atomic orbital electron populations 1.22185 0.94135 1.04396 1.01763 1.22071 0.95356 0.75703 1.06402 1.48792 1.51429 1.12880 1.02169 1.77145 1.23814 1.03997 1.09166 1.22712 0.98498 0.94549 0.94196 1.20109 1.01371 0.92946 0.98098 1.17342 1.16834 0.90146 0.89730 1.42780 1.24281 1.14871 1.47633 1.21720 0.83111 0.83924 0.79391 1.90519 1.24137 1.82378 1.48641 1.18779 0.95960 0.89607 0.94850 0.93728 1.21557 0.95417 1.01842 0.98868 1.21225 1.02991 1.00205 1.32116 0.93637 1.25524 0.97642 0.99741 0.94736 1.69927 1.25819 1.25544 1.33548 0.85717 0.79694 0.78768 0.78067 1.20331 1.19848 1.20383 1.21616 0.98076 0.92154 0.92448 1.20542 1.04892 1.02896 0.86086 0.92902 0.94129 0.87232 0.87712 0.85583 0.92391 0.90286 0.89284 0.74875 0.95867 0.91025 0.92888 0.92600 0.87276 0.88781 0.91071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.66 10.24 71.98 0.74 -1.92 16 2 C 0.12 2.01 6.81 86.38 0.59 2.60 16 3 N -0.37 -10.06 3.64 -333.69 -1.21 -11.28 16 4 N -0.32 -10.80 12.56 -47.15 -0.59 -11.40 16 5 C 0.07 2.43 7.22 43.20 0.31 2.74 16 6 C -0.07 -2.19 10.42 71.24 0.74 -1.45 16 7 C -0.04 -1.32 5.71 37.62 0.21 -1.10 16 8 N -0.65 -23.38 5.23 -304.05 -1.59 -24.97 16 9 C 0.53 24.71 7.12 87.66 0.62 25.33 16 10 O -0.58 -32.07 15.44 -3.11 -0.05 -32.11 16 11 C 0.03 1.47 2.63 -12.29 -0.03 1.44 16 12 H 0.04 2.28 8.14 -2.39 -0.02 2.26 16 13 C -0.12 -5.37 8.87 71.98 0.64 -4.73 16 14 C -0.53 -30.60 8.38 25.60 0.21 -30.39 16 15 H 0.05 2.85 6.75 -2.91 -0.02 2.83 16 16 C 0.02 1.28 5.30 84.65 0.45 1.73 16 17 N -0.91 -50.71 11.32 21.45 0.24 -50.46 16 18 Si 0.95 45.15 29.54 68.60 2.03 47.17 16 19 H -0.28 -13.13 7.11 99.48 0.71 -12.43 16 20 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 21 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 22 C 0.09 2.50 6.98 41.37 0.29 2.79 16 23 C -0.09 -1.71 9.87 71.24 0.70 -1.01 16 24 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 25 H 0.04 0.85 8.14 -2.39 -0.02 0.84 16 26 H 0.11 0.98 8.14 -2.38 -0.02 0.96 16 27 H 0.10 1.48 8.14 -2.38 -0.02 1.46 16 28 H 0.13 1.17 7.69 -2.39 -0.02 1.15 16 29 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 30 H 0.08 2.49 8.14 -2.38 -0.02 2.47 16 31 H 0.09 2.44 8.14 -2.39 -0.02 2.42 16 32 H 0.41 12.35 8.39 -92.71 -0.78 11.58 16 33 H 0.02 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.07 3.57 6.07 -2.38 -0.01 3.56 16 35 H 0.05 1.92 7.67 -2.38 -0.02 1.90 16 36 H 0.26 14.03 8.31 -92.71 -0.77 13.26 16 37 H 0.11 1.52 8.14 -2.39 -0.02 1.50 16 38 H 0.09 1.40 7.76 -2.39 -0.02 1.38 16 39 H 0.07 1.70 8.14 -2.39 -0.02 1.69 16 Total: -1.00 -74.73 330.80 4.57 -70.15 By element: Atomic # 1 Polarization: 16.61 SS G_CDS: 0.27 Total: 16.88 kcal Atomic # 6 Polarization: -9.46 SS G_CDS: 5.48 Total: -3.98 kcal Atomic # 7 Polarization: -94.96 SS G_CDS: -3.15 Total: -98.11 kcal Atomic # 8 Polarization: -32.07 SS G_CDS: -0.05 Total: -32.11 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.17 kcal Total: -74.73 4.57 -70.15 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597305540.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.781 kcal (2) G-P(sol) polarization free energy of solvation -74.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.154 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds