Wall clock time and date at job start Mon Mar 30 2020 06:31:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47365 * 2 1 4 4 C 1.53008 * 109.47009 * 119.99577 * 2 1 3 5 5 N 1.46494 * 109.46925 * 174.99773 * 4 2 1 6 6 C 1.35817 * 126.05338 * 125.27108 * 5 4 2 7 7 C 1.35753 * 107.56353 * 180.11421 * 6 5 4 8 8 N 1.40764 * 126.07951 * 179.90084 * 7 6 5 9 9 C 1.34774 * 120.00253 * 179.71572 * 8 7 6 10 10 O 1.21303 * 119.99645 * 359.97438 * 9 8 7 11 11 C 1.50698 * 120.00338 * 179.97438 * 9 8 7 12 12 H 1.09003 * 109.46889 * 300.00448 * 11 9 8 13 13 C 1.53000 * 109.46939 * 59.99981 * 11 9 8 14 14 C 1.50694 * 109.47166 * 179.97438 * 11 9 8 15 15 H 1.08000 * 120.00563 * 0.02562 * 14 11 9 16 16 C 1.37885 * 119.99902 * 180.02562 * 14 11 9 17 17 N 1.31516 * 119.99913 * 359.97438 * 16 14 11 18 18 Si 1.86798 * 119.99766 * 179.97438 * 16 14 11 19 19 H 1.48506 * 109.46985 * 179.97438 * 18 16 14 20 20 H 1.48494 * 109.47276 * 299.99832 * 18 16 14 21 21 H 1.48498 * 109.47150 * 60.00043 * 18 16 14 22 22 C 1.40255 * 107.84085 * 359.63859 * 7 6 5 23 23 N 1.30835 * 108.33172 * 0.22172 * 22 7 6 24 24 H 1.08999 * 109.47176 * 300.00322 * 1 2 3 25 25 H 1.08997 * 109.46989 * 59.99825 * 1 2 3 26 26 H 1.08990 * 109.47425 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47176 * 239.99678 * 2 1 3 28 28 H 1.08999 * 109.47237 * 59.99715 * 3 2 1 29 29 H 1.08996 * 109.47171 * 180.02562 * 3 2 1 30 30 H 1.09005 * 109.46649 * 299.99876 * 3 2 1 31 31 H 1.09000 * 109.46806 * 55.00299 * 4 2 1 32 32 H 1.09000 * 109.46975 * 294.99926 * 4 2 1 33 33 H 1.07999 * 126.21682 * 359.97438 * 6 5 4 34 34 H 0.97006 * 119.99496 * 359.71257 * 8 7 6 35 35 H 1.08997 * 109.47359 * 180.02562 * 13 11 9 36 36 H 1.09007 * 109.47356 * 300.00035 * 13 11 9 37 37 H 1.09000 * 109.47156 * 59.99760 * 13 11 9 38 38 H 0.97001 * 119.99646 * 179.97438 * 17 16 14 39 39 H 1.07995 * 125.83112 * 180.20707 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 1.2494 5 7 3.5000 -0.8264 1.1907 6 6 4.3711 -0.3982 2.1406 7 6 5.6251 -0.6787 1.7029 8 7 6.8236 -0.3976 2.3854 9 6 8.0071 -0.7364 1.8367 10 8 8.0393 -1.2840 0.7548 11 6 9.2903 -0.4350 2.5672 12 1 9.3727 0.6399 2.7282 13 6 9.2895 -1.1544 3.9175 14 6 10.4600 -0.9116 1.7453 15 1 10.2913 -1.3851 0.7894 16 6 11.7459 -0.7433 2.2138 17 7 11.9514 -0.1663 3.3776 18 14 13.1958 -1.3348 1.1954 19 1 14.4603 -1.0376 1.9152 20 1 13.0825 -2.7991 0.9767 21 1 13.1973 -0.6371 -0.1155 22 6 5.5138 -1.3038 0.4523 23 7 4.2445 -1.3915 0.1475 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.6767 1.9564 0.8899 29 1 3.1300 1.4424 -0.0005 30 1 1.6767 1.9563 -0.8901 31 1 1.6054 -1.7198 1.2953 32 1 1.7516 -0.1582 2.1370 33 1 4.1131 0.0807 3.0737 34 1 6.7978 0.0400 3.2508 35 1 10.2173 -0.9361 4.4461 36 1 8.4433 -0.8100 4.5122 37 1 9.2069 -2.2293 3.7565 38 1 12.8560 -0.0482 3.7073 39 1 6.3356 -1.6529 -0.1554 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597309399.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:22 Heat of formation + Delta-G solvation = 26.912821 kcal Electronic energy + Delta-G solvation = -19795.388738 eV Core-core repulsion = 16739.456315 eV Total energy + Delta-G solvation = -3055.932423 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.02983 -38.72214 -36.57225 -33.92661 -33.77887 -31.62864 -30.54567 -28.72840 -27.44069 -25.96583 -25.14532 -22.91591 -21.67273 -20.73100 -20.17205 -18.87283 -17.21777 -16.30895 -16.03318 -15.69596 -15.23203 -14.71760 -14.41935 -14.23507 -14.01287 -13.45637 -13.06345 -12.95756 -12.64186 -12.55715 -12.44814 -12.24104 -11.61061 -11.44591 -11.27667 -11.08523 -10.99238 -10.76787 -10.68846 -10.43855 -10.35727 -10.06880 -9.96661 -9.10912 -9.00211 -8.63094 -8.33199 -7.26974 -6.03636 -4.06836 2.03018 2.60112 3.03236 3.37607 3.39790 3.45462 3.89670 3.92408 4.34563 4.48373 4.55760 4.72691 4.96206 4.99496 5.16841 5.29989 5.32793 5.34551 5.45522 5.56784 5.62005 5.78048 5.83973 5.88913 6.02988 6.10120 6.21662 6.59660 6.69001 6.80952 6.90920 7.15635 7.38680 7.46653 7.74039 7.91437 7.99694 8.13702 8.40840 9.01779 9.16419 9.58755 11.04055 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.047756 B = 0.003580 C = 0.003474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.175951 B = 7818.382885 C = 8058.496956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.110 4.110 3 C -0.146 4.146 4 C 0.148 3.852 5 N -0.376 5.376 6 C -0.008 4.008 7 C 0.024 3.976 8 N -0.661 5.661 9 C 0.521 3.479 10 O -0.532 6.532 11 C 0.033 3.967 12 H 0.055 0.945 13 C -0.134 4.134 14 C -0.502 4.502 15 H 0.075 0.925 16 C 0.059 3.941 17 N -0.897 5.897 18 Si 0.902 3.098 19 H -0.288 1.288 20 H -0.276 1.276 21 H -0.276 1.276 22 C 0.048 3.952 23 N -0.290 5.290 24 H 0.056 0.944 25 H 0.060 0.940 26 H 0.057 0.943 27 H 0.086 0.914 28 H 0.053 0.947 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.079 0.921 32 H 0.091 0.909 33 H 0.170 0.830 34 H 0.405 0.595 35 H 0.094 0.906 36 H 0.012 0.988 37 H 0.032 0.968 38 H 0.261 0.739 39 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.431 2.495 0.284 20.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.130 4.130 3 C -0.203 4.203 4 C 0.027 3.973 5 N -0.162 5.162 6 C -0.154 4.154 7 C -0.081 4.081 8 N -0.307 5.307 9 C 0.312 3.688 10 O -0.407 6.407 11 C 0.012 3.988 12 H 0.073 0.927 13 C -0.192 4.192 14 C -0.541 4.541 15 H 0.093 0.907 16 C -0.142 4.142 17 N -0.537 5.537 18 Si 0.729 3.271 19 H -0.214 1.214 20 H -0.202 1.202 21 H -0.202 1.202 22 C -0.139 4.139 23 N -0.112 5.112 24 H 0.075 0.925 25 H 0.079 0.921 26 H 0.076 0.924 27 H 0.104 0.896 28 H 0.072 0.928 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.097 0.903 32 H 0.109 0.891 33 H 0.187 0.813 34 H 0.240 0.760 35 H 0.113 0.887 36 H 0.031 0.969 37 H 0.052 0.948 38 H 0.071 0.929 39 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -21.151 1.778 -1.211 21.260 hybrid contribution 1.334 0.287 0.762 1.563 sum -19.817 2.065 -0.449 19.929 Atomic orbital electron populations 1.21783 0.94201 1.02046 1.02234 1.21440 0.95825 0.97059 0.98645 1.21805 1.01767 0.95151 1.01585 1.21671 0.74797 1.01489 0.99391 1.48207 1.05613 1.47783 1.14642 1.21770 0.88814 1.07644 0.97192 1.17992 0.86420 1.07829 0.95881 1.43467 1.03366 1.61359 1.22527 1.22151 0.84797 0.75922 0.85910 1.90405 1.86791 1.41442 1.22028 1.18864 0.87894 0.98421 0.93603 0.92742 1.21770 1.01615 0.98663 0.97144 1.21098 0.89193 1.38777 1.04984 0.90671 1.24945 0.98952 0.95111 0.95182 1.69858 1.21394 1.43710 1.18692 0.86490 0.80986 0.79401 0.80181 1.21413 1.20161 1.20154 1.24600 0.94259 0.99291 0.95757 1.77273 1.03877 1.19578 1.10454 0.92499 0.92062 0.92373 0.89574 0.92824 0.92343 0.92530 0.90277 0.89102 0.81291 0.76026 0.88698 0.96893 0.94845 0.92876 0.77789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.91 9.19 37.16 0.34 -0.57 16 2 C -0.11 -0.97 3.00 -90.62 -0.27 -1.24 16 3 C -0.15 -1.35 9.08 37.16 0.34 -1.01 16 4 C 0.15 1.36 5.91 -4.04 -0.02 1.34 16 5 N -0.38 -5.04 3.16 -61.02 -0.19 -5.23 16 6 C -0.01 -0.10 11.52 -16.68 -0.19 -0.30 16 7 C 0.02 0.41 6.90 -83.88 -0.58 -0.17 16 8 N -0.66 -11.80 5.37 -10.04 -0.05 -11.85 16 9 C 0.52 11.73 7.12 -10.99 -0.08 11.65 16 10 O -0.53 -13.37 12.62 5.54 0.07 -13.30 16 11 C 0.03 0.81 2.64 -92.93 -0.25 0.57 16 12 H 0.05 1.36 8.14 -51.93 -0.42 0.94 16 13 C -0.13 -3.01 8.86 37.16 0.33 -2.68 16 14 C -0.50 -14.04 8.37 -34.44 -0.29 -14.33 16 15 H 0.08 2.21 6.75 -52.49 -0.35 1.85 16 16 C 0.06 1.62 5.30 -17.82 -0.09 1.52 16 17 N -0.90 -24.91 11.32 55.43 0.63 -24.29 16 18 Si 0.90 21.71 29.54 -169.99 -5.02 16.69 16 19 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 20 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 21 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 22 C 0.05 0.90 10.84 -17.22 -0.19 0.71 16 23 N -0.29 -4.87 12.33 30.70 0.38 -4.50 16 24 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 25 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 27 H 0.09 0.94 8.05 -51.93 -0.42 0.52 16 28 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.70 7.75 -51.93 -0.40 0.30 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.09 0.61 8.07 -51.93 -0.42 0.19 16 33 H 0.17 1.62 8.06 -52.49 -0.42 1.20 16 34 H 0.41 5.98 8.24 -40.82 -0.34 5.64 16 35 H 0.09 2.35 6.07 -51.93 -0.32 2.04 16 36 H 0.01 0.23 7.56 -51.93 -0.39 -0.17 16 37 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 39 H 0.21 4.18 5.92 -52.49 -0.31 3.87 16 LS Contribution 324.32 15.07 4.89 4.89 Total: -1.00 -31.45 324.32 -6.15 -37.59 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: -5.89 Total: 4.51 kcal Atomic # 6 Polarization: -3.57 SS G_CDS: -0.95 Total: -4.52 kcal Atomic # 7 Polarization: -46.63 SS G_CDS: 0.76 Total: -45.87 kcal Atomic # 8 Polarization: -13.37 SS G_CDS: 0.07 Total: -13.30 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -31.45 -6.15 -37.59 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597309399.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.508 kcal (2) G-P(sol) polarization free energy of solvation -31.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.595 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds