Wall clock time and date at job start Mon Mar 30 2020 06:31:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47365 * 2 1 4 4 C 1.53008 * 109.47009 * 119.99577 * 2 1 3 5 5 N 1.46494 * 109.46925 * 174.99773 * 4 2 1 6 6 C 1.35817 * 126.05338 * 125.27108 * 5 4 2 7 7 C 1.35753 * 107.56353 * 180.11421 * 6 5 4 8 8 N 1.40764 * 126.07951 * 179.90084 * 7 6 5 9 9 C 1.34774 * 120.00253 * 179.71572 * 8 7 6 10 10 O 1.21303 * 119.99645 * 359.97438 * 9 8 7 11 11 C 1.50698 * 120.00338 * 179.97438 * 9 8 7 12 12 H 1.09003 * 109.46889 * 300.00448 * 11 9 8 13 13 C 1.53000 * 109.46939 * 59.99981 * 11 9 8 14 14 C 1.50694 * 109.47166 * 179.97438 * 11 9 8 15 15 H 1.08000 * 120.00563 * 0.02562 * 14 11 9 16 16 C 1.37885 * 119.99902 * 180.02562 * 14 11 9 17 17 N 1.31516 * 119.99913 * 359.97438 * 16 14 11 18 18 Si 1.86798 * 119.99766 * 179.97438 * 16 14 11 19 19 H 1.48506 * 109.46985 * 179.97438 * 18 16 14 20 20 H 1.48494 * 109.47276 * 299.99832 * 18 16 14 21 21 H 1.48498 * 109.47150 * 60.00043 * 18 16 14 22 22 C 1.40255 * 107.84085 * 359.63859 * 7 6 5 23 23 N 1.30835 * 108.33172 * 0.22172 * 22 7 6 24 24 H 1.08999 * 109.47176 * 300.00322 * 1 2 3 25 25 H 1.08997 * 109.46989 * 59.99825 * 1 2 3 26 26 H 1.08990 * 109.47425 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47176 * 239.99678 * 2 1 3 28 28 H 1.08999 * 109.47237 * 59.99715 * 3 2 1 29 29 H 1.08996 * 109.47171 * 180.02562 * 3 2 1 30 30 H 1.09005 * 109.46649 * 299.99876 * 3 2 1 31 31 H 1.09000 * 109.46806 * 55.00299 * 4 2 1 32 32 H 1.09000 * 109.46975 * 294.99926 * 4 2 1 33 33 H 1.07999 * 126.21682 * 359.97438 * 6 5 4 34 34 H 0.97006 * 119.99496 * 359.71257 * 8 7 6 35 35 H 1.08997 * 109.47359 * 180.02562 * 13 11 9 36 36 H 1.09007 * 109.47356 * 300.00035 * 13 11 9 37 37 H 1.09000 * 109.47156 * 59.99760 * 13 11 9 38 38 H 0.97001 * 119.99646 * 179.97438 * 17 16 14 39 39 H 1.07995 * 125.83112 * 180.20707 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 1.2494 5 7 3.5000 -0.8264 1.1907 6 6 4.3711 -0.3982 2.1406 7 6 5.6251 -0.6787 1.7029 8 7 6.8236 -0.3976 2.3854 9 6 8.0071 -0.7364 1.8367 10 8 8.0393 -1.2840 0.7548 11 6 9.2903 -0.4350 2.5672 12 1 9.3727 0.6399 2.7282 13 6 9.2895 -1.1544 3.9175 14 6 10.4600 -0.9116 1.7453 15 1 10.2913 -1.3851 0.7894 16 6 11.7459 -0.7433 2.2138 17 7 11.9514 -0.1663 3.3776 18 14 13.1958 -1.3348 1.1954 19 1 14.4603 -1.0376 1.9152 20 1 13.0825 -2.7991 0.9767 21 1 13.1973 -0.6371 -0.1155 22 6 5.5138 -1.3038 0.4523 23 7 4.2445 -1.3915 0.1475 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.6767 1.9564 0.8899 29 1 3.1300 1.4424 -0.0005 30 1 1.6767 1.9563 -0.8901 31 1 1.6054 -1.7198 1.2953 32 1 1.7516 -0.1582 2.1370 33 1 4.1131 0.0807 3.0737 34 1 6.7978 0.0400 3.2508 35 1 10.2173 -0.9361 4.4461 36 1 8.4433 -0.8100 4.5122 37 1 9.2069 -2.2293 3.7565 38 1 12.8560 -0.0482 3.7073 39 1 6.3356 -1.6529 -0.1554 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597309399.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:22 Heat of formation + Delta-G solvation = 6.625691 kcal Electronic energy + Delta-G solvation = -19796.268454 eV Core-core repulsion = 16739.456315 eV Total energy + Delta-G solvation = -3056.812139 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.27528 -40.35734 -37.39085 -35.77548 -35.42945 -32.82777 -32.36634 -29.99354 -28.07003 -27.18768 -26.94946 -24.65412 -22.88354 -21.94538 -21.34147 -20.25056 -18.58208 -18.11524 -17.61486 -16.82801 -16.55034 -16.32702 -15.91343 -15.35789 -15.21119 -14.86059 -14.57783 -14.31093 -13.86029 -13.72074 -13.46133 -13.14202 -12.94075 -12.89344 -12.71673 -12.55376 -12.31766 -12.17541 -11.99267 -11.96895 -11.91970 -11.53938 -11.47432 -11.03132 -10.57787 -10.27329 -10.26704 -8.58928 -8.13652 -6.23339 0.85348 1.42883 1.44130 1.52134 1.53554 1.57492 2.31823 2.37943 2.55992 3.16520 3.57828 3.89190 3.91862 4.09349 4.15983 4.31378 4.40228 4.53836 4.65409 4.69767 4.77886 4.80000 4.80103 4.95137 4.96930 5.01262 5.05548 5.21614 5.26422 5.36350 5.42335 5.52301 5.76195 5.89367 5.98925 6.18786 6.23591 6.63404 6.80047 6.89879 7.41563 7.55100 8.92061 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.047756 B = 0.003580 C = 0.003474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.175951 B = 7818.382885 C = 8058.496956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.107 4.107 3 C -0.143 4.143 4 C 0.135 3.865 5 N -0.361 5.361 6 C 0.034 3.966 7 C -0.019 4.019 8 N -0.639 5.639 9 C 0.520 3.480 10 O -0.570 6.570 11 C 0.031 3.969 12 H 0.046 0.954 13 C -0.121 4.121 14 C -0.530 4.530 15 H 0.050 0.950 16 C 0.021 3.979 17 N -0.910 5.910 18 Si 0.954 3.046 19 H -0.275 1.275 20 H -0.277 1.277 21 H -0.277 1.277 22 C 0.020 3.980 23 N -0.310 5.310 24 H 0.075 0.925 25 H 0.061 0.939 26 H 0.063 0.937 27 H 0.056 0.944 28 H 0.075 0.925 29 H 0.025 0.975 30 H 0.058 0.942 31 H 0.091 0.909 32 H 0.132 0.868 33 H 0.222 0.778 34 H 0.422 0.578 35 H 0.072 0.928 36 H 0.055 0.945 37 H 0.021 0.979 38 H 0.265 0.735 39 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.040 3.322 2.137 23.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.127 4.127 3 C -0.200 4.200 4 C 0.016 3.984 5 N -0.147 5.147 6 C -0.115 4.115 7 C -0.123 4.123 8 N -0.286 5.286 9 C 0.310 3.690 10 O -0.448 6.448 11 C 0.010 3.990 12 H 0.064 0.936 13 C -0.179 4.179 14 C -0.568 4.568 15 H 0.068 0.932 16 C -0.178 4.178 17 N -0.550 5.550 18 Si 0.780 3.220 19 H -0.199 1.199 20 H -0.203 1.203 21 H -0.203 1.203 22 C -0.166 4.166 23 N -0.134 5.134 24 H 0.094 0.906 25 H 0.080 0.920 26 H 0.082 0.918 27 H 0.075 0.925 28 H 0.094 0.906 29 H 0.044 0.956 30 H 0.077 0.923 31 H 0.110 0.890 32 H 0.150 0.850 33 H 0.239 0.761 34 H 0.260 0.740 35 H 0.091 0.909 36 H 0.074 0.926 37 H 0.041 0.959 38 H 0.074 0.926 39 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -23.817 2.618 0.661 23.969 hybrid contribution 1.938 0.075 0.185 1.948 sum -21.879 2.693 0.845 22.061 Atomic orbital electron populations 1.21733 0.91783 1.02808 1.03248 1.21386 0.97693 0.96264 0.97313 1.21788 0.99575 0.95815 1.02865 1.22213 0.71965 1.03078 1.01191 1.48706 1.07240 1.45348 1.13366 1.22468 0.87024 1.04201 0.97772 1.18140 0.87244 1.10772 0.96159 1.42940 1.02483 1.60339 1.22830 1.21713 0.85721 0.76181 0.85419 1.90409 1.87467 1.43430 1.23502 1.18768 0.88165 0.97813 0.94302 0.93604 1.21586 1.02276 0.97765 0.96301 1.21275 0.91234 1.39510 1.04828 0.93212 1.25556 1.00862 0.95180 0.96203 1.69932 1.21993 1.43779 1.19250 0.85680 0.78735 0.78719 0.78909 1.19944 1.20259 1.20275 1.24232 0.94414 1.01075 0.96853 1.77223 1.03413 1.20696 1.12018 0.90562 0.92005 0.91776 0.92544 0.90592 0.95568 0.92327 0.89034 0.85042 0.76127 0.74042 0.90926 0.92570 0.95946 0.92576 0.80929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.27 9.19 71.98 0.66 -0.60 16 2 C -0.11 -1.62 3.00 -10.79 -0.03 -1.66 16 3 C -0.14 -2.32 9.08 71.98 0.65 -1.67 16 4 C 0.13 1.95 5.91 86.38 0.51 2.46 16 5 N -0.36 -8.76 3.16 -346.98 -1.10 -9.86 16 6 C 0.03 0.79 11.52 83.50 0.96 1.75 16 7 C -0.02 -0.63 6.90 37.62 0.26 -0.37 16 8 N -0.64 -22.32 5.37 -304.05 -1.63 -23.96 16 9 C 0.52 23.97 7.12 87.66 0.62 24.60 16 10 O -0.57 -30.31 12.62 -3.10 -0.04 -30.35 16 11 C 0.03 1.53 2.64 -12.29 -0.03 1.50 16 12 H 0.05 2.34 8.14 -2.39 -0.02 2.32 16 13 C -0.12 -5.41 8.86 71.98 0.64 -4.77 16 14 C -0.53 -30.65 8.37 25.60 0.21 -30.43 16 15 H 0.05 3.07 6.75 -2.91 -0.02 3.06 16 16 C 0.02 1.19 5.30 84.66 0.45 1.64 16 17 N -0.91 -50.79 11.32 21.45 0.24 -50.55 16 18 Si 0.95 45.12 29.54 68.60 2.03 47.15 16 19 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 20 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 21 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 22 C 0.02 0.77 10.84 85.33 0.92 1.69 16 23 N -0.31 -10.49 12.33 -56.77 -0.70 -11.19 16 24 H 0.08 0.44 8.14 -2.39 -0.02 0.42 16 25 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 26 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 27 H 0.06 1.20 8.05 -2.39 -0.02 1.18 16 28 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.03 0.59 7.75 -2.39 -0.02 0.57 16 30 H 0.06 0.91 8.14 -2.38 -0.02 0.89 16 31 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.13 0.93 8.07 -2.39 -0.02 0.91 16 33 H 0.22 2.77 8.06 -2.91 -0.02 2.75 16 34 H 0.42 11.43 8.24 -92.70 -0.76 10.67 16 35 H 0.07 3.59 6.07 -2.39 -0.01 3.57 16 36 H 0.06 1.96 7.56 -2.38 -0.02 1.94 16 37 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.27 14.04 8.31 -92.71 -0.77 13.27 16 39 H 0.17 7.75 5.92 -2.91 -0.02 7.73 16 Total: -1.00 -72.47 324.32 4.92 -67.55 By element: Atomic # 1 Polarization: 16.79 SS G_CDS: 0.28 Total: 17.07 kcal Atomic # 6 Polarization: -11.71 SS G_CDS: 5.83 Total: -5.88 kcal Atomic # 7 Polarization: -92.36 SS G_CDS: -3.18 Total: -95.55 kcal Atomic # 8 Polarization: -30.31 SS G_CDS: -0.04 Total: -30.35 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.15 kcal Total: -72.47 4.92 -67.55 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597309399.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.177 kcal (2) G-P(sol) polarization free energy of solvation -72.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.552 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds