Wall clock time and date at job start Mon Mar 30 2020 06:31:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47249 * 2 1 4 4 C 1.52997 * 109.47422 * 120.00682 * 2 1 3 5 5 N 1.46498 * 109.47130 * 174.99555 * 4 2 1 6 6 C 1.35812 * 126.05302 * 125.00461 * 5 4 2 7 7 C 1.35754 * 107.56349 * 180.02562 * 6 5 4 8 8 N 1.40764 * 126.08036 * 179.97438 * 7 6 5 9 9 C 1.34778 * 119.99956 * 179.72774 * 8 7 6 10 10 O 1.21304 * 119.99731 * 359.97438 * 9 8 7 11 11 C 1.50697 * 119.99953 * 180.02562 * 9 8 7 12 12 H 1.09003 * 109.47447 * 59.99551 * 11 9 8 13 13 C 1.53007 * 109.47176 * 299.99825 * 11 9 8 14 14 C 1.50696 * 109.47268 * 179.97438 * 11 9 8 15 15 H 1.08000 * 119.99585 * 35.10309 * 14 11 9 16 16 C 1.37879 * 120.00180 * 215.10171 * 14 11 9 17 17 N 1.31513 * 120.00199 * 184.90617 * 16 14 11 18 18 Si 1.86801 * 119.99873 * 4.91296 * 16 14 11 19 19 H 1.48494 * 109.47183 * 84.81924 * 18 16 14 20 20 H 1.48505 * 109.46949 * 204.81769 * 18 16 14 21 21 H 1.48498 * 109.46824 * 324.81649 * 18 16 14 22 22 C 1.40255 * 107.83869 * 0.25956 * 7 6 5 23 23 N 1.30833 * 108.33297 * 359.55462 * 22 7 6 24 24 H 1.09005 * 109.46333 * 299.99452 * 1 2 3 25 25 H 1.08996 * 109.47124 * 59.99027 * 1 2 3 26 26 H 1.08990 * 109.47139 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.46333 * 240.00547 * 2 1 3 28 28 H 1.09005 * 109.47006 * 60.00960 * 3 2 1 29 29 H 1.09003 * 109.46747 * 179.97438 * 3 2 1 30 30 H 1.08988 * 109.47508 * 300.00530 * 3 2 1 31 31 H 1.09007 * 109.46853 * 54.99518 * 4 2 1 32 32 H 1.09001 * 109.47121 * 295.00224 * 4 2 1 33 33 H 1.08000 * 126.22053 * 359.97438 * 6 5 4 34 34 H 0.97002 * 120.00024 * 359.97438 * 8 7 6 35 35 H 1.08999 * 109.46739 * 55.06995 * 13 11 9 36 36 H 1.09002 * 109.47184 * 175.07404 * 13 11 9 37 37 H 1.08995 * 109.46608 * 295.07320 * 13 11 9 38 38 H 0.96992 * 120.00317 * 179.97438 * 17 16 14 39 39 H 1.07992 * 125.83158 * 179.73998 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7214 1.2491 5 7 3.5001 -0.8265 1.1903 6 6 4.3714 -0.3940 2.1380 7 6 5.6253 -0.6780 1.7019 8 7 6.8239 -0.3956 2.3837 9 6 8.0071 -0.7381 1.8367 10 8 8.0390 -1.2902 0.7570 11 6 9.2904 -0.4363 2.5669 12 1 9.2885 -0.9456 3.5306 13 6 9.4085 1.0731 2.7880 14 6 10.4598 -0.9175 1.7473 15 1 10.4238 -0.8601 0.6694 16 6 11.5758 -1.4310 2.3735 17 7 12.6337 -1.7611 1.6654 18 14 11.5850 -1.6579 4.2276 19 1 10.9633 -2.9623 4.5698 20 1 12.9849 -1.6317 4.7226 21 1 10.8142 -0.5599 4.8644 22 6 5.5142 -1.2969 0.4482 23 7 4.2446 -1.3906 0.1465 24 1 -0.3632 0.5138 0.8901 25 1 -0.3633 0.5140 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8932 -0.5138 -0.8901 28 1 1.6768 1.9563 0.8901 29 1 3.1301 1.4424 0.0005 30 1 1.6767 1.9564 -0.8898 31 1 1.6054 -1.7200 1.2949 32 1 1.7517 -0.1586 2.1369 33 1 4.1138 0.0890 3.0690 34 1 6.7982 0.0423 3.2489 35 1 8.5199 1.4351 3.3050 36 1 10.2914 1.2839 3.3915 37 1 9.4985 1.5753 1.8248 38 1 13.4189 -2.1219 2.1059 39 1 6.3361 -1.6405 -0.1623 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597309400.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:26 Heat of formation + Delta-G solvation = 29.346017 kcal Electronic energy + Delta-G solvation = -19850.101728 eV Core-core repulsion = 16794.274816 eV Total energy + Delta-G solvation = -3055.826911 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.07520 -38.81709 -36.60082 -33.98174 -33.70794 -31.70036 -31.20644 -28.87036 -27.46224 -26.03314 -25.27593 -22.96487 -21.69071 -20.75704 -20.11609 -18.86838 -17.31746 -16.95957 -16.15672 -15.73310 -15.35343 -14.70205 -14.35117 -14.18440 -14.15355 -13.47620 -13.20677 -13.00410 -12.64697 -12.53774 -12.48746 -12.30381 -12.26739 -11.55147 -11.39970 -11.30146 -11.13026 -11.10397 -10.76854 -10.46818 -10.38511 -10.11608 -9.83436 -9.18959 -9.14446 -8.71228 -8.55393 -7.32644 -6.07546 -4.07370 1.99069 2.56334 2.98229 3.24403 3.29956 3.33799 3.80357 3.82397 4.31869 4.37384 4.53457 4.70162 4.93155 4.94904 5.14413 5.22014 5.30122 5.32455 5.41234 5.54450 5.59622 5.73652 5.78206 5.84488 6.00056 6.03351 6.07617 6.13205 6.34705 6.49895 6.64076 6.80556 7.11716 7.15991 7.34565 7.53287 7.88275 8.13623 8.52263 9.07359 9.08979 9.51490 11.05630 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.045850 B = 0.003773 C = 0.003720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 610.546348 B = 7420.053119 C = 7526.071537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.111 4.111 3 C -0.146 4.146 4 C 0.148 3.852 5 N -0.376 5.376 6 C -0.007 4.007 7 C 0.022 3.978 8 N -0.663 5.663 9 C 0.520 3.480 10 O -0.515 6.515 11 C -0.001 4.001 12 H 0.056 0.944 13 C -0.135 4.135 14 C -0.496 4.496 15 H 0.087 0.913 16 C 0.072 3.928 17 N -0.893 5.893 18 Si 0.871 3.129 19 H -0.275 1.275 20 H -0.286 1.286 21 H -0.264 1.264 22 C 0.049 3.951 23 N -0.288 5.288 24 H 0.056 0.944 25 H 0.060 0.940 26 H 0.057 0.943 27 H 0.086 0.914 28 H 0.052 0.948 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.079 0.921 32 H 0.091 0.909 33 H 0.170 0.830 34 H 0.403 0.597 35 H 0.026 0.974 36 H 0.055 0.945 37 H 0.053 0.947 38 H 0.265 0.735 39 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.551 5.965 3.980 23.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.130 4.130 3 C -0.203 4.203 4 C 0.026 3.974 5 N -0.162 5.162 6 C -0.153 4.153 7 C -0.083 4.083 8 N -0.310 5.310 9 C 0.310 3.690 10 O -0.388 6.388 11 C -0.022 4.022 12 H 0.074 0.926 13 C -0.193 4.193 14 C -0.534 4.534 15 H 0.105 0.895 16 C -0.130 4.130 17 N -0.531 5.531 18 Si 0.698 3.302 19 H -0.201 1.201 20 H -0.212 1.212 21 H -0.189 1.189 22 C -0.138 4.138 23 N -0.110 5.110 24 H 0.075 0.925 25 H 0.080 0.920 26 H 0.076 0.924 27 H 0.105 0.895 28 H 0.071 0.929 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.098 0.902 32 H 0.109 0.891 33 H 0.187 0.813 34 H 0.238 0.762 35 H 0.045 0.955 36 H 0.075 0.925 37 H 0.072 0.928 38 H 0.075 0.925 39 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -23.217 5.100 2.361 23.887 hybrid contribution 0.687 0.328 2.218 2.345 sum -22.529 5.428 4.579 23.622 Atomic orbital electron populations 1.21785 0.94186 1.02064 1.02235 1.21441 0.95844 0.97050 0.98652 1.21804 1.01747 0.95159 1.01589 1.21677 0.74765 1.01530 0.99395 1.48226 1.05636 1.47585 1.14764 1.21758 0.88810 1.07489 0.97284 1.17976 0.86318 1.08074 0.95904 1.43505 1.03453 1.61430 1.22608 1.21958 0.84279 0.76490 0.86320 1.90459 1.86523 1.40207 1.21626 1.19332 0.90967 0.94962 0.96983 0.92599 1.21974 0.99452 0.96854 1.01014 1.20731 0.96601 1.40607 0.95462 0.89453 1.25027 0.95384 0.94831 0.97735 1.69875 1.04176 1.43262 1.35776 0.86970 0.77474 0.79161 0.86612 1.20080 1.21241 1.18906 1.24622 0.94306 0.99231 0.95657 1.77293 1.03855 1.19559 1.10310 0.92510 0.92045 0.92358 0.89535 0.92857 0.92354 0.92496 0.90232 0.89114 0.81323 0.76241 0.95492 0.92546 0.92761 0.92491 0.77706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.88 9.19 37.16 0.34 -0.54 16 2 C -0.11 -0.95 3.00 -90.62 -0.27 -1.22 16 3 C -0.15 -1.31 9.08 37.16 0.34 -0.97 16 4 C 0.15 1.32 5.91 -4.04 -0.02 1.29 16 5 N -0.38 -4.90 3.16 -61.03 -0.19 -5.10 16 6 C -0.01 -0.09 11.52 -16.68 -0.19 -0.28 16 7 C 0.02 0.37 6.90 -83.88 -0.58 -0.21 16 8 N -0.66 -11.21 5.33 -10.04 -0.05 -11.27 16 9 C 0.52 11.29 7.12 -10.99 -0.08 11.21 16 10 O -0.52 -12.96 12.93 5.54 0.07 -12.89 16 11 C 0.00 -0.01 2.30 -92.92 -0.21 -0.23 16 12 H 0.06 1.22 5.29 -51.93 -0.27 0.95 16 13 C -0.13 -2.60 9.12 37.16 0.34 -2.26 16 14 C -0.50 -13.99 8.36 -34.44 -0.29 -14.27 16 15 H 0.09 2.80 7.61 -52.49 -0.40 2.40 16 16 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 17 N -0.89 -27.29 13.96 55.43 0.77 -26.52 16 18 Si 0.87 20.60 26.99 -169.99 -4.59 16.01 16 19 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 20 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 21 H -0.26 -5.70 6.82 56.52 0.39 -5.32 16 22 C 0.05 0.90 10.84 -17.22 -0.19 0.72 16 23 N -0.29 -4.78 12.33 30.70 0.38 -4.40 16 24 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 25 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.09 0.93 8.05 -51.93 -0.42 0.51 16 28 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.68 7.75 -51.93 -0.40 0.28 16 30 H 0.06 0.47 8.14 -51.94 -0.42 0.05 16 31 H 0.08 0.66 8.14 -51.92 -0.42 0.23 16 32 H 0.09 0.58 8.07 -51.93 -0.42 0.16 16 33 H 0.17 1.50 8.06 -52.49 -0.42 1.08 16 34 H 0.40 5.37 8.19 -40.82 -0.33 5.04 16 35 H 0.03 0.41 7.43 -51.93 -0.39 0.02 16 36 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 37 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16 38 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 39 H 0.21 4.19 5.92 -52.49 -0.31 3.88 16 LS Contribution 324.36 15.07 4.89 4.89 Total: -1.00 -33.49 324.36 -5.54 -39.03 By element: Atomic # 1 Polarization: 10.95 SS G_CDS: -5.90 Total: 5.05 kcal Atomic # 6 Polarization: -3.89 SS G_CDS: -0.91 Total: -4.81 kcal Atomic # 7 Polarization: -48.19 SS G_CDS: 0.91 Total: -47.29 kcal Atomic # 8 Polarization: -12.96 SS G_CDS: 0.07 Total: -12.89 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -4.59 Total: 16.01 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -33.49 -5.54 -39.03 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597309400.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.373 kcal (2) G-P(sol) polarization free energy of solvation -33.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.027 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds