Wall clock time and date at job start Mon Mar 30 2020 06:31:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47249 * 2 1 4 4 C 1.52997 * 109.47422 * 120.00682 * 2 1 3 5 5 N 1.46498 * 109.47130 * 174.99555 * 4 2 1 6 6 C 1.35812 * 126.05302 * 125.00461 * 5 4 2 7 7 C 1.35754 * 107.56349 * 180.02562 * 6 5 4 8 8 N 1.40764 * 126.08036 * 179.97438 * 7 6 5 9 9 C 1.34778 * 119.99956 * 179.72774 * 8 7 6 10 10 O 1.21304 * 119.99731 * 359.97438 * 9 8 7 11 11 C 1.50697 * 119.99953 * 180.02562 * 9 8 7 12 12 H 1.09003 * 109.47447 * 59.99551 * 11 9 8 13 13 C 1.53007 * 109.47176 * 299.99825 * 11 9 8 14 14 C 1.50696 * 109.47268 * 179.97438 * 11 9 8 15 15 H 1.08000 * 119.99585 * 35.10309 * 14 11 9 16 16 C 1.37879 * 120.00180 * 215.10171 * 14 11 9 17 17 N 1.31513 * 120.00199 * 184.90617 * 16 14 11 18 18 Si 1.86801 * 119.99873 * 4.91296 * 16 14 11 19 19 H 1.48494 * 109.47183 * 84.81924 * 18 16 14 20 20 H 1.48505 * 109.46949 * 204.81769 * 18 16 14 21 21 H 1.48498 * 109.46824 * 324.81649 * 18 16 14 22 22 C 1.40255 * 107.83869 * 0.25956 * 7 6 5 23 23 N 1.30833 * 108.33297 * 359.55462 * 22 7 6 24 24 H 1.09005 * 109.46333 * 299.99452 * 1 2 3 25 25 H 1.08996 * 109.47124 * 59.99027 * 1 2 3 26 26 H 1.08990 * 109.47139 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.46333 * 240.00547 * 2 1 3 28 28 H 1.09005 * 109.47006 * 60.00960 * 3 2 1 29 29 H 1.09003 * 109.46747 * 179.97438 * 3 2 1 30 30 H 1.08988 * 109.47508 * 300.00530 * 3 2 1 31 31 H 1.09007 * 109.46853 * 54.99518 * 4 2 1 32 32 H 1.09001 * 109.47121 * 295.00224 * 4 2 1 33 33 H 1.08000 * 126.22053 * 359.97438 * 6 5 4 34 34 H 0.97002 * 120.00024 * 359.97438 * 8 7 6 35 35 H 1.08999 * 109.46739 * 55.06995 * 13 11 9 36 36 H 1.09002 * 109.47184 * 175.07404 * 13 11 9 37 37 H 1.08995 * 109.46608 * 295.07320 * 13 11 9 38 38 H 0.96992 * 120.00317 * 179.97438 * 17 16 14 39 39 H 1.07992 * 125.83158 * 179.73998 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7214 1.2491 5 7 3.5001 -0.8265 1.1903 6 6 4.3714 -0.3940 2.1380 7 6 5.6253 -0.6780 1.7019 8 7 6.8239 -0.3956 2.3837 9 6 8.0071 -0.7381 1.8367 10 8 8.0390 -1.2902 0.7570 11 6 9.2904 -0.4363 2.5669 12 1 9.2885 -0.9456 3.5306 13 6 9.4085 1.0731 2.7880 14 6 10.4598 -0.9175 1.7473 15 1 10.4238 -0.8601 0.6694 16 6 11.5758 -1.4310 2.3735 17 7 12.6337 -1.7611 1.6654 18 14 11.5850 -1.6579 4.2276 19 1 10.9633 -2.9623 4.5698 20 1 12.9849 -1.6317 4.7226 21 1 10.8142 -0.5599 4.8644 22 6 5.5142 -1.2969 0.4482 23 7 4.2446 -1.3906 0.1465 24 1 -0.3632 0.5138 0.8901 25 1 -0.3633 0.5140 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8932 -0.5138 -0.8901 28 1 1.6768 1.9563 0.8901 29 1 3.1301 1.4424 0.0005 30 1 1.6767 1.9564 -0.8898 31 1 1.6054 -1.7200 1.2949 32 1 1.7517 -0.1586 2.1369 33 1 4.1138 0.0890 3.0690 34 1 6.7982 0.0423 3.2489 35 1 8.5199 1.4351 3.3050 36 1 10.2914 1.2839 3.3915 37 1 9.4985 1.5753 1.8248 38 1 13.4189 -2.1219 2.1059 39 1 6.3361 -1.6405 -0.1623 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597309400.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:26 Heat of formation + Delta-G solvation = 5.190262 kcal Electronic energy + Delta-G solvation = -19851.149200 eV Core-core repulsion = 16794.274816 eV Total energy + Delta-G solvation = -3056.874383 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.28372 -40.40151 -37.39241 -35.63958 -35.44959 -33.32803 -32.60453 -30.07480 -28.06930 -27.22323 -26.97618 -24.62301 -22.85251 -21.91476 -21.26372 -20.24005 -19.11279 -18.39342 -17.57307 -16.88655 -16.58221 -16.15610 -15.84546 -15.49945 -15.17891 -14.94362 -14.50233 -14.36992 -14.02380 -13.82756 -13.72668 -13.16555 -13.04910 -12.94362 -12.88114 -12.56600 -12.30490 -12.11591 -11.96784 -11.91882 -11.73409 -11.55245 -11.47074 -11.22652 -10.72877 -10.38445 -10.27690 -8.59543 -8.24968 -6.32014 0.85729 1.38028 1.41828 1.50399 1.54072 1.57376 2.29697 2.38126 2.41754 3.12364 3.58056 3.89298 3.91522 4.08997 4.15528 4.23540 4.38416 4.42935 4.53266 4.65442 4.67742 4.75806 4.78268 4.80096 4.90109 4.95480 5.01176 5.17191 5.21959 5.25772 5.36390 5.42120 5.53028 5.61837 5.89863 6.19314 6.28048 6.62467 6.74781 6.90187 7.29665 7.53917 8.93159 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.045850 B = 0.003773 C = 0.003720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 610.546348 B = 7420.053119 C = 7526.071537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.108 4.108 3 C -0.143 4.143 4 C 0.135 3.865 5 N -0.362 5.362 6 C 0.038 3.962 7 C -0.019 4.019 8 N -0.637 5.637 9 C 0.515 3.485 10 O -0.567 6.567 11 C -0.002 4.002 12 H 0.076 0.924 13 C -0.128 4.128 14 C -0.507 4.507 15 H 0.022 0.978 16 C 0.004 3.996 17 N -0.954 5.954 18 Si 0.947 3.053 19 H -0.271 1.271 20 H -0.287 1.287 21 H -0.217 1.217 22 C 0.018 3.982 23 N -0.312 5.312 24 H 0.076 0.924 25 H 0.060 0.940 26 H 0.062 0.938 27 H 0.054 0.946 28 H 0.077 0.923 29 H 0.026 0.974 30 H 0.057 0.943 31 H 0.090 0.910 32 H 0.134 0.866 33 H 0.226 0.774 34 H 0.425 0.575 35 H 0.079 0.921 36 H 0.059 0.941 37 H 0.035 0.965 38 H 0.267 0.733 39 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.349 7.666 8.466 28.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.127 4.127 3 C -0.200 4.200 4 C 0.016 3.984 5 N -0.147 5.147 6 C -0.111 4.111 7 C -0.124 4.124 8 N -0.285 5.285 9 C 0.305 3.695 10 O -0.444 6.444 11 C -0.024 4.024 12 H 0.094 0.906 13 C -0.186 4.186 14 C -0.546 4.546 15 H 0.040 0.960 16 C -0.192 4.192 17 N -0.593 5.593 18 Si 0.769 3.231 19 H -0.196 1.196 20 H -0.213 1.213 21 H -0.139 1.139 22 C -0.168 4.168 23 N -0.135 5.135 24 H 0.095 0.905 25 H 0.079 0.921 26 H 0.081 0.919 27 H 0.073 0.927 28 H 0.095 0.905 29 H 0.045 0.955 30 H 0.076 0.924 31 H 0.109 0.891 32 H 0.152 0.848 33 H 0.243 0.757 34 H 0.263 0.737 35 H 0.098 0.902 36 H 0.078 0.922 37 H 0.054 0.946 38 H 0.076 0.924 39 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -27.101 6.839 6.861 28.780 hybrid contribution 1.659 -0.175 0.678 1.800 sum -25.442 6.663 7.539 27.359 Atomic orbital electron populations 1.21735 0.91817 1.02770 1.03261 1.21388 0.97679 0.96341 0.97323 1.21784 0.99600 0.95728 1.02889 1.22212 0.71962 1.03052 1.01198 1.48727 1.07276 1.45163 1.13518 1.22503 0.86853 1.03904 0.97831 1.18106 0.87364 1.10920 0.95978 1.42919 1.02246 1.60338 1.22994 1.21700 0.85590 0.76488 0.85750 1.90476 1.87356 1.42766 1.23849 1.19295 0.89212 0.97315 0.96565 0.90604 1.21856 1.02152 0.93747 1.00882 1.20893 0.99355 1.41022 0.93294 0.95972 1.26117 0.94428 0.94200 1.04493 1.70079 1.05334 1.45179 1.38751 0.85757 0.78138 0.80614 0.78601 1.19590 1.21276 1.13943 1.24212 0.94351 1.01227 0.97007 1.77242 1.03435 1.20818 1.12051 0.90455 0.92076 0.91855 0.92717 0.90451 0.95506 0.92424 0.89137 0.84823 0.75741 0.73667 0.90209 0.92190 0.94580 0.92440 0.81370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.21 9.19 71.98 0.66 -0.55 16 2 C -0.11 -1.58 3.00 -10.79 -0.03 -1.61 16 3 C -0.14 -2.20 9.08 71.98 0.65 -1.55 16 4 C 0.14 1.84 5.91 86.38 0.51 2.35 16 5 N -0.36 -8.43 3.16 -346.99 -1.09 -9.52 16 6 C 0.04 0.81 11.52 83.50 0.96 1.77 16 7 C -0.02 -0.61 6.90 37.62 0.26 -0.35 16 8 N -0.64 -20.28 5.33 -304.05 -1.62 -21.90 16 9 C 0.52 22.69 7.12 87.66 0.62 23.32 16 10 O -0.57 -30.71 12.93 -3.10 -0.04 -30.75 16 11 C 0.00 -0.09 2.30 -12.29 -0.03 -0.12 16 12 H 0.08 3.08 5.29 -2.39 -0.01 3.07 16 13 C -0.13 -4.65 9.12 71.98 0.66 -3.99 16 14 C -0.51 -30.07 8.36 25.60 0.21 -29.85 16 15 H 0.02 1.55 7.61 -2.91 -0.02 1.52 16 16 C 0.00 0.23 5.47 84.66 0.46 0.69 16 17 N -0.95 -61.38 13.96 21.45 0.30 -61.08 16 18 Si 0.95 41.92 26.99 68.60 1.85 43.77 16 19 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 20 H -0.29 -12.64 7.11 99.48 0.71 -11.94 16 21 H -0.22 -7.95 6.82 99.48 0.68 -7.27 16 22 C 0.02 0.68 10.84 85.33 0.92 1.60 16 23 N -0.31 -10.49 12.33 -56.77 -0.70 -11.19 16 24 H 0.08 0.40 8.14 -2.38 -0.02 0.38 16 25 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 26 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 27 H 0.05 1.16 8.05 -2.38 -0.02 1.14 16 28 H 0.08 0.82 8.14 -2.38 -0.02 0.80 16 29 H 0.03 0.58 7.75 -2.39 -0.02 0.56 16 30 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.09 1.13 8.14 -2.38 -0.02 1.11 16 32 H 0.13 0.78 8.07 -2.39 -0.02 0.76 16 33 H 0.23 2.24 8.06 -2.91 -0.02 2.21 16 34 H 0.42 9.38 8.19 -92.71 -0.76 8.62 16 35 H 0.08 2.04 7.43 -2.39 -0.02 2.03 16 36 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 37 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.27 15.91 8.31 -92.71 -0.77 15.14 16 39 H 0.17 7.70 5.92 -2.91 -0.02 7.69 16 Total: -1.00 -83.63 324.36 4.82 -78.81 By element: Atomic # 1 Polarization: 19.90 SS G_CDS: 0.26 Total: 20.16 kcal Atomic # 6 Polarization: -14.17 SS G_CDS: 5.87 Total: -8.30 kcal Atomic # 7 Polarization: -100.57 SS G_CDS: -3.12 Total: -103.69 kcal Atomic # 8 Polarization: -30.71 SS G_CDS: -0.04 Total: -30.75 kcal Atomic # 14 Polarization: 41.92 SS G_CDS: 1.85 Total: 43.77 kcal Total: -83.63 4.82 -78.81 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597309400.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.004 kcal (2) G-P(sol) polarization free energy of solvation -83.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.813 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds