Wall clock time and date at job start Mon Mar 30 2020 06:35:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86800 * 119.99800 * 2 1 4 4 H 1.48500 * 109.46577 * 239.99659 * 3 2 1 5 5 H 1.48497 * 109.47160 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.46659 * 119.99850 * 3 2 1 7 7 C 1.37881 * 119.99632 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99805 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00130 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.46905 * 179.97438 * 9 7 2 11 11 N 1.46506 * 109.47057 * 179.97438 * 10 9 7 12 12 C 1.34778 * 119.99744 * 179.97438 * 11 10 9 13 13 O 1.21270 * 120.00224 * 0.02562 * 12 11 10 14 14 C 1.50706 * 119.99590 * 180.02562 * 12 11 10 15 15 C 1.52998 * 109.46902 * 180.02562 * 14 12 11 16 16 C 1.52996 * 109.47237 * 179.97438 * 15 14 12 17 17 C 1.53001 * 109.47032 * 300.00423 * 16 15 14 18 18 C 1.53006 * 109.47030 * 179.97438 * 17 16 15 19 19 C 1.53000 * 117.49988 * 128.74828 * 18 17 16 20 20 C 1.52993 * 117.50097 * 60.08275 * 18 17 16 21 21 C 1.52998 * 109.47455 * 59.99711 * 17 16 15 22 22 C 1.52996 * 109.46926 * 299.99943 * 21 17 16 23 23 H 0.96999 * 119.99633 * 0.02562 * 1 2 3 24 24 H 1.08998 * 109.47294 * 59.99814 * 9 7 2 25 25 H 1.09000 * 109.47080 * 299.99663 * 9 7 2 26 26 H 1.08998 * 109.47105 * 59.99933 * 10 9 7 27 27 H 1.09000 * 109.47167 * 299.99843 * 10 9 7 28 28 H 0.96998 * 119.99830 * 0.02562 * 11 10 9 29 29 H 1.08998 * 109.47299 * 60.00122 * 14 12 11 30 30 H 1.08998 * 109.47105 * 59.99928 * 15 14 12 31 31 H 1.09000 * 109.47167 * 299.99838 * 15 14 12 32 32 H 1.08995 * 109.47558 * 180.02562 * 16 15 14 33 33 H 1.09006 * 109.46876 * 59.99755 * 16 15 14 34 34 H 1.08998 * 109.46863 * 299.99686 * 17 16 15 35 35 H 1.08998 * 115.54561 * 274.41168 * 18 17 16 36 36 H 1.09002 * 117.50034 * 359.97438 * 19 18 17 37 37 H 1.08994 * 117.49821 * 145.02184 * 19 18 17 38 38 H 1.08998 * 117.50372 * 214.98185 * 20 18 17 39 39 H 1.09006 * 117.50059 * 359.97438 * 20 18 17 40 40 H 1.08998 * 109.47105 * 60.00123 * 21 17 16 41 41 H 1.09000 * 109.47167 * 180.02562 * 21 17 16 42 42 H 1.08998 * 109.47376 * 300.00015 * 22 21 17 43 43 H 1.09008 * 109.47008 * 179.97438 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1942 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 7 1.5127 -4.9308 0.0012 12 6 2.1866 -6.0980 0.0007 13 8 3.3993 -6.0980 0.0003 14 6 1.4330 -7.4032 0.0008 15 6 2.4273 -8.5661 0.0009 16 6 1.6623 -9.8911 0.0016 17 6 0.7830 -9.9716 1.2511 18 6 0.0175 -11.2964 1.2515 19 6 0.0903 -12.1541 2.5164 20 6 0.8390 -12.5870 1.2534 21 6 -0.2112 -8.8087 1.2510 22 6 0.5538 -7.4837 1.2503 23 1 -0.4849 0.8401 -0.0004 24 1 0.6247 -2.5571 -0.8896 25 1 0.6241 -2.5567 0.8903 26 1 2.8719 -3.6043 0.8905 27 1 2.8719 -3.6044 -0.8895 28 1 0.5427 -4.9308 0.0011 29 1 0.8061 -7.4608 -0.8890 30 1 3.0539 -8.5083 0.8909 31 1 3.0540 -8.5084 -0.8891 32 1 2.3705 -10.7196 0.0022 33 1 1.0353 -9.9491 -0.8882 34 1 1.4099 -9.9136 2.1409 35 1 -0.9203 -11.2976 0.6959 36 1 0.6839 -11.7747 3.3482 37 1 -0.7994 -12.7198 2.7927 38 1 0.4417 -13.4375 0.6995 39 1 1.9250 -12.4925 1.2540 40 1 -0.8381 -8.8668 0.3612 41 1 -0.8374 -8.8659 2.1414 42 1 1.1807 -7.4257 2.1401 43 1 -0.1546 -6.6552 1.2498 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597491631.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:25 Heat of formation + Delta-G solvation = -58.723854 kcal Electronic energy + Delta-G solvation = -19832.858329 eV Core-core repulsion = 16876.752765 eV Total energy + Delta-G solvation = -2956.105564 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.06523 -38.57770 -36.20818 -34.82596 -32.85431 -31.08726 -30.85070 -29.29296 -25.22046 -23.89476 -23.07317 -22.15669 -21.18466 -20.75543 -20.02808 -19.50823 -16.87889 -16.41995 -16.11369 -15.18664 -15.04608 -14.81315 -14.49233 -14.20411 -14.03384 -13.73962 -13.18708 -12.97498 -12.54480 -12.30565 -12.25483 -12.09290 -11.81850 -11.43133 -11.21429 -11.19746 -11.01227 -10.83608 -10.66551 -10.65896 -10.56091 -10.30685 -10.25007 -9.87691 -9.73457 -9.40585 -9.09200 -8.51624 -8.32555 -6.09082 -4.11919 3.06505 3.31310 3.35002 3.38100 3.53225 3.74036 4.29488 4.42297 4.55004 4.59796 4.72310 4.79001 4.89991 5.05954 5.22660 5.27791 5.28989 5.33322 5.36716 5.39123 5.41718 5.46361 5.60060 5.69453 5.79702 5.85223 5.95241 5.97716 6.05746 6.10607 6.14374 6.27337 6.36549 6.37895 6.40687 6.75705 6.97094 7.52379 7.62546 7.89227 8.06978 8.28841 8.71653 8.94013 9.52798 11.02501 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.049083 B = 0.002954 C = 0.002844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 570.328320 B = 9475.400650 C = 9842.334642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.059 3.941 3 Si 0.897 3.103 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.522 4.522 8 H 0.058 0.942 9 C 0.013 3.987 10 C 0.121 3.879 11 N -0.723 5.723 12 C 0.507 3.493 13 O -0.553 6.553 14 C -0.107 4.107 15 C -0.098 4.098 16 C -0.110 4.110 17 C -0.059 4.059 18 C -0.145 4.145 19 C -0.183 4.183 20 C -0.182 4.182 21 C -0.108 4.108 22 C -0.111 4.111 23 H 0.262 0.738 24 H 0.022 0.978 25 H 0.022 0.978 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.397 0.603 29 H 0.093 0.907 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.071 0.929 35 H 0.102 0.898 36 H 0.093 0.907 37 H 0.090 0.910 38 H 0.091 0.909 39 H 0.094 0.906 40 H 0.065 0.935 41 H 0.066 0.934 42 H 0.067 0.933 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.660 -23.034 2.216 23.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.143 4.143 3 Si 0.725 3.275 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.561 4.561 8 H 0.077 0.923 9 C -0.024 4.024 10 C -0.001 4.001 11 N -0.372 5.372 12 C 0.293 3.707 13 O -0.431 6.431 14 C -0.128 4.128 15 C -0.136 4.136 16 C -0.148 4.148 17 C -0.077 4.077 18 C -0.163 4.163 19 C -0.220 4.220 20 C -0.219 4.219 21 C -0.146 4.146 22 C -0.149 4.149 23 H 0.072 0.928 24 H 0.040 0.960 25 H 0.040 0.960 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.230 0.770 29 H 0.112 0.888 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.089 0.911 35 H 0.121 0.879 36 H 0.111 0.889 37 H 0.109 0.891 38 H 0.109 0.891 39 H 0.112 0.888 40 H 0.083 0.917 41 H 0.084 0.916 42 H 0.086 0.914 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -1.935 -22.877 2.215 23.065 hybrid contribution -0.130 0.990 -0.017 0.999 sum -2.065 -21.887 2.199 22.094 Atomic orbital electron populations 1.69950 1.06084 1.26972 1.50354 1.25000 0.94900 0.99400 0.94989 0.86569 0.79519 0.82646 0.78788 1.20109 1.21232 1.20104 1.21025 0.93207 0.90446 1.51403 0.92333 1.19311 0.94192 0.91144 0.97780 1.21702 0.96041 0.81739 1.00655 1.46361 1.10467 1.06614 1.73787 1.20613 0.88170 0.85587 0.76327 1.90653 1.14161 1.87881 1.50414 1.21358 0.97929 0.93187 1.00343 1.21326 0.96822 0.92113 1.03339 1.21579 0.98301 0.97218 0.97673 1.20801 0.96010 0.92128 0.98776 1.22373 1.00848 0.91622 1.01481 1.23021 1.02769 1.04139 0.92022 1.22941 0.99079 0.98260 1.01604 1.21535 0.97431 0.93351 1.02240 1.21536 0.98323 0.97996 0.97079 0.92794 0.95997 0.95975 0.92698 0.92692 0.76976 0.88849 0.91342 0.91266 0.91795 0.91864 0.91104 0.87939 0.88863 0.89105 0.89087 0.88774 0.91659 0.91568 0.91384 0.91086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.24 13.29 55.43 0.74 -25.51 16 2 C 0.06 1.66 5.46 -17.81 -0.10 1.56 16 3 Si 0.90 21.49 29.54 -169.99 -5.02 16.47 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.52 -14.61 9.11 -34.44 -0.31 -14.92 16 8 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 9 C 0.01 0.33 5.09 -27.89 -0.14 0.19 16 10 C 0.12 2.62 5.61 -4.04 -0.02 2.60 16 11 N -0.72 -12.73 5.45 -60.29 -0.33 -13.06 16 12 C 0.51 8.64 7.15 -10.98 -0.08 8.56 16 13 O -0.55 -11.55 15.98 5.57 0.09 -11.46 16 14 C -0.11 -1.30 2.53 -91.77 -0.23 -1.54 16 15 C -0.10 -1.14 4.49 -26.73 -0.12 -1.26 16 16 C -0.11 -0.99 5.04 -26.73 -0.13 -1.13 16 17 C -0.06 -0.50 2.34 -90.62 -0.21 -0.71 16 18 C -0.15 -1.10 5.14 -90.62 -0.47 -1.57 16 19 C -0.18 -1.31 10.18 -26.69 -0.27 -1.58 16 20 C -0.18 -1.30 9.74 -26.69 -0.26 -1.56 16 21 C -0.11 -0.93 5.18 -26.73 -0.14 -1.07 16 22 C -0.11 -1.18 5.10 -26.73 -0.14 -1.31 16 23 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 24 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 25 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.05 1.24 8.14 -51.93 -0.42 0.82 16 27 H 0.05 1.24 8.14 -51.93 -0.42 0.82 16 28 H 0.40 6.06 7.89 -40.82 -0.32 5.74 16 29 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.07 0.88 8.10 -51.93 -0.42 0.46 16 31 H 0.07 0.87 8.10 -51.93 -0.42 0.45 16 32 H 0.06 0.54 7.29 -51.93 -0.38 0.16 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.07 0.65 7.90 -51.93 -0.41 0.24 16 35 H 0.10 0.75 8.11 -51.93 -0.42 0.33 16 36 H 0.09 0.67 8.05 -51.93 -0.42 0.25 16 37 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.09 0.68 7.61 -51.93 -0.40 0.28 16 40 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 41 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.07 0.73 7.56 -51.92 -0.39 0.34 16 LS Contribution 343.98 15.07 5.18 5.18 Total: -1.00 -31.03 343.98 -9.74 -40.76 By element: Atomic # 1 Polarization: 9.13 SS G_CDS: -7.77 Total: 1.36 kcal Atomic # 6 Polarization: -11.12 SS G_CDS: -2.63 Total: -13.75 kcal Atomic # 7 Polarization: -38.98 SS G_CDS: 0.41 Total: -38.57 kcal Atomic # 8 Polarization: -11.55 SS G_CDS: 0.09 Total: -11.46 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -31.03 -9.74 -40.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597491631.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.960 kcal (2) G-P(sol) polarization free energy of solvation -31.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds