Wall clock time and date at job start Mon Mar 30 2020 06:35:24
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31524 * 1
3 3 Si 1.86800 * 119.99800 * 2 1
4 4 H 1.48500 * 109.46577 * 239.99659 * 3 2 1
5 5 H 1.48497 * 109.47160 * 359.97438 * 3 2 1
6 6 H 1.48502 * 109.46659 * 119.99850 * 3 2 1
7 7 C 1.37881 * 119.99632 * 179.97438 * 2 1 3
8 8 H 1.08001 * 119.99805 * 180.02562 * 7 2 1
9 9 C 1.50696 * 120.00130 * 0.02562 * 7 2 1
10 10 C 1.52998 * 109.46905 * 179.97438 * 9 7 2
11 11 N 1.46506 * 109.47057 * 179.97438 * 10 9 7
12 12 C 1.34778 * 119.99744 * 179.97438 * 11 10 9
13 13 O 1.21270 * 120.00224 * 0.02562 * 12 11 10
14 14 C 1.50706 * 119.99590 * 180.02562 * 12 11 10
15 15 C 1.52998 * 109.46902 * 180.02562 * 14 12 11
16 16 C 1.52996 * 109.47237 * 179.97438 * 15 14 12
17 17 C 1.53001 * 109.47032 * 300.00423 * 16 15 14
18 18 C 1.53006 * 109.47030 * 179.97438 * 17 16 15
19 19 C 1.53000 * 117.49988 * 128.74828 * 18 17 16
20 20 C 1.52993 * 117.50097 * 60.08275 * 18 17 16
21 21 C 1.52998 * 109.47455 * 59.99711 * 17 16 15
22 22 C 1.52996 * 109.46926 * 299.99943 * 21 17 16
23 23 H 0.96999 * 119.99633 * 0.02562 * 1 2 3
24 24 H 1.08998 * 109.47294 * 59.99814 * 9 7 2
25 25 H 1.09000 * 109.47080 * 299.99663 * 9 7 2
26 26 H 1.08998 * 109.47105 * 59.99933 * 10 9 7
27 27 H 1.09000 * 109.47167 * 299.99843 * 10 9 7
28 28 H 0.96998 * 119.99830 * 0.02562 * 11 10 9
29 29 H 1.08998 * 109.47299 * 60.00122 * 14 12 11
30 30 H 1.08998 * 109.47105 * 59.99928 * 15 14 12
31 31 H 1.09000 * 109.47167 * 299.99838 * 15 14 12
32 32 H 1.08995 * 109.47558 * 180.02562 * 16 15 14
33 33 H 1.09006 * 109.46876 * 59.99755 * 16 15 14
34 34 H 1.08998 * 109.46863 * 299.99686 * 17 16 15
35 35 H 1.08998 * 115.54561 * 274.41168 * 18 17 16
36 36 H 1.09002 * 117.50034 * 359.97438 * 19 18 17
37 37 H 1.08994 * 117.49821 * 145.02184 * 19 18 17
38 38 H 1.08998 * 117.50372 * 214.98185 * 20 18 17
39 39 H 1.09006 * 117.50059 * 359.97438 * 20 18 17
40 40 H 1.08998 * 109.47105 * 60.00123 * 21 17 16
41 41 H 1.09000 * 109.47167 * 180.02562 * 21 17 16
42 42 H 1.08998 * 109.47376 * 300.00015 * 22 21 17
43 43 H 1.09008 * 109.47008 * 179.97438 * 22 21 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2492 1.6178 0.0000
4 1 3.1029 1.6963 -1.2125
5 1 1.2842 2.7464 -0.0006
6 1 3.1029 1.6964 1.2126
7 6 2.0046 -1.1941 0.0005
8 1 3.0846 -1.1942 0.0010
9 6 1.2510 -2.4992 0.0005
10 6 2.2453 -3.6621 0.0005
11 7 1.5127 -4.9308 0.0012
12 6 2.1866 -6.0980 0.0007
13 8 3.3993 -6.0980 0.0003
14 6 1.4330 -7.4032 0.0008
15 6 2.4273 -8.5661 0.0009
16 6 1.6623 -9.8911 0.0016
17 6 0.7830 -9.9716 1.2511
18 6 0.0175 -11.2964 1.2515
19 6 0.0903 -12.1541 2.5164
20 6 0.8390 -12.5870 1.2534
21 6 -0.2112 -8.8087 1.2510
22 6 0.5538 -7.4837 1.2503
23 1 -0.4849 0.8401 -0.0004
24 1 0.6247 -2.5571 -0.8896
25 1 0.6241 -2.5567 0.8903
26 1 2.8719 -3.6043 0.8905
27 1 2.8719 -3.6044 -0.8895
28 1 0.5427 -4.9308 0.0011
29 1 0.8061 -7.4608 -0.8890
30 1 3.0539 -8.5083 0.8909
31 1 3.0540 -8.5084 -0.8891
32 1 2.3705 -10.7196 0.0022
33 1 1.0353 -9.9491 -0.8882
34 1 1.4099 -9.9136 2.1409
35 1 -0.9203 -11.2976 0.6959
36 1 0.6839 -11.7747 3.3482
37 1 -0.7994 -12.7198 2.7927
38 1 0.4417 -13.4375 0.6995
39 1 1.9250 -12.4925 1.2540
40 1 -0.8381 -8.8668 0.3612
41 1 -0.8374 -8.8659 2.1414
42 1 1.1807 -7.4257 2.1401
43 1 -0.1546 -6.6552 1.2498
RHF calculation, no. of doubly occupied orbitals= 51
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000597491631.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 06:35:24
Heat of formation + Delta-G solvation = -75.944535 kcal
Electronic energy + Delta-G solvation = -19833.605074 eV
Core-core repulsion = 16876.752765 eV
Total energy + Delta-G solvation = -2956.852309 eV
No. of doubly occupied orbitals = 51
Molecular weight
(most abundant/longest-lived isotopes) = 265.178 amu
Computer time = 0.60 seconds
Orbital eigenvalues (eV)
-41.23352 -39.54138 -37.05905 -36.54085 -34.83229 -32.29496 -31.68300 -30.90901
-26.96778 -25.06277 -23.85189 -22.91760 -22.74984 -21.92865 -20.81208 -20.60367
-18.59227 -18.03494 -17.04589 -16.65481 -16.48581 -16.29015 -15.49519 -15.31947
-15.02957 -14.96116 -14.43288 -14.31483 -14.08499 -13.42397 -13.25064 -13.14558
-12.97229 -12.90768 -12.55798 -12.41688 -12.25312 -12.20320 -12.01669 -11.68051
-11.56280 -11.47482 -11.45615 -11.26782 -10.94988 -10.61100 -10.58406 -10.54019
-10.00486 -8.25149 -6.35843 1.40853 1.43166 1.51243 1.67515 2.27995
2.46343 2.97192 3.09333 3.57446 3.69390 3.82212 3.97105 4.08931
4.11774 4.27617 4.39278 4.44598 4.47225 4.50516 4.55982 4.60475
4.62446 4.69274 4.83541 4.84904 4.91826 5.01666 5.10940 5.17490
5.20994 5.27273 5.28719 5.32575 5.35183 5.38130 5.46886 5.50539
5.56868 5.63976 5.77729 6.15308 6.64983 6.77071 7.30592 7.33431
8.86477
Molecular weight = 265.18amu
Principal moments of inertia in cm(-1)
A = 0.049083 B = 0.002954 C = 0.002844
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 570.328320 B = 9475.400650 C = 9842.334642
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.926 5.926
2 C 0.008 3.992
3 Si 0.965 3.035
4 H -0.269 1.269
5 H -0.279 1.279
6 H -0.269 1.269
7 C -0.549 4.549
8 H 0.057 0.943
9 C 0.024 3.976
10 C 0.140 3.860
11 N -0.717 5.717
12 C 0.505 3.495
13 O -0.594 6.594
14 C -0.096 4.096
15 C -0.096 4.096
16 C -0.102 4.102
17 C -0.056 4.056
18 C -0.146 4.146
19 C -0.185 4.185
20 C -0.182 4.182
21 C -0.102 4.102
22 C -0.109 4.109
23 H 0.266 0.734
24 H 0.009 0.991
25 H 0.009 0.991
26 H 0.043 0.957
27 H 0.043 0.957
28 H 0.410 0.590
29 H 0.117 0.883
30 H 0.050 0.950
31 H 0.056 0.944
32 H 0.069 0.931
33 H 0.074 0.926
34 H 0.061 0.939
35 H 0.111 0.889
36 H 0.089 0.911
37 H 0.099 0.901
38 H 0.100 0.900
39 H 0.091 0.909
40 H 0.078 0.922
41 H 0.074 0.926
42 H 0.054 0.946
43 H 0.075 0.925
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.428 -23.955 2.065 24.287
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.565 5.565
2 C -0.191 4.191
3 Si 0.789 3.211
4 H -0.194 1.194
5 H -0.204 1.204
6 H -0.194 1.194
7 C -0.588 4.588
8 H 0.075 0.925
9 C -0.013 4.013
10 C 0.016 3.984
11 N -0.368 5.368
12 C 0.293 3.707
13 O -0.475 6.475
14 C -0.117 4.117
15 C -0.134 4.134
16 C -0.139 4.139
17 C -0.075 4.075
18 C -0.165 4.165
19 C -0.222 4.222
20 C -0.219 4.219
21 C -0.139 4.139
22 C -0.147 4.147
23 H 0.075 0.925
24 H 0.027 0.973
25 H 0.027 0.973
26 H 0.061 0.939
27 H 0.062 0.938
28 H 0.246 0.754
29 H 0.135 0.865
30 H 0.069 0.931
31 H 0.075 0.925
32 H 0.088 0.912
33 H 0.093 0.907
34 H 0.079 0.921
35 H 0.129 0.871
36 H 0.108 0.892
37 H 0.118 0.882
38 H 0.118 0.882
39 H 0.109 0.891
40 H 0.097 0.903
41 H 0.093 0.907
42 H 0.073 0.927
43 H 0.094 0.906
Dipole moment (debyes) X Y Z Total
from point charges -2.725 -23.823 2.067 24.067
hybrid contribution 0.122 1.251 0.042 1.257
sum -2.603 -22.572 2.108 22.819
Atomic orbital electron populations
1.70051 1.07508 1.28107 1.50868 1.25873 0.95818 1.03077 0.94353
0.85504 0.78331 0.78139 0.79119 1.19362 1.20449 1.19368 1.21446
0.93537 0.92039 1.51763 0.92460 1.19115 0.94168 0.91695 0.96341
1.21200 0.95081 0.82642 0.99511 1.46201 1.11055 1.05622 1.73931
1.21511 0.87905 0.86648 0.74619 1.90633 1.16251 1.88503 1.52097
1.21390 0.97935 0.90087 1.02272 1.21302 0.96707 0.93476 1.01894
1.21519 0.98361 0.95525 0.98499 1.20750 0.95878 0.92859 0.97997
1.22333 1.01089 0.91066 1.01967 1.23078 1.03112 1.04092 0.91894
1.22999 0.98968 0.98335 1.01625 1.21507 0.97267 0.91810 1.03343
1.21541 0.98023 0.99672 0.95453 0.92479 0.97299 0.97278 0.93896
0.93820 0.75411 0.86514 0.93132 0.92507 0.91193 0.90691 0.92099
0.87118 0.89237 0.88239 0.88175 0.89066 0.90291 0.90718 0.92683
0.90628
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -54.45 13.29 21.45 0.28 -54.16 16
2 C 0.01 0.43 5.46 84.65 0.46 0.89 16
3 Si 0.96 43.83 29.54 68.60 2.03 45.86 16
4 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16
5 H -0.28 -12.27 7.11 99.48 0.71 -11.57 16
6 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16
7 C -0.55 -31.06 9.11 25.60 0.23 -30.83 16
8 H 0.06 3.17 7.74 -2.91 -0.02 3.15 16
9 C 0.02 1.24 5.09 29.85 0.15 1.39 16
10 C 0.14 6.15 5.61 86.38 0.48 6.64 16
11 N -0.72 -25.27 5.45 -463.05 -2.52 -27.80 16
12 C 0.51 17.16 7.15 87.66 0.63 17.79 16
13 O -0.59 -25.30 15.98 -3.00 -0.05 -25.35 16
14 C -0.10 -2.22 2.53 -11.54 -0.03 -2.25 16
15 C -0.10 -2.17 4.49 30.59 0.14 -2.03 16
16 C -0.10 -1.64 5.04 30.59 0.15 -1.48 16
17 C -0.06 -0.84 2.34 -10.79 -0.03 -0.87 16
18 C -0.15 -1.87 5.14 -10.79 -0.06 -1.92 16
19 C -0.18 -2.29 10.18 30.62 0.31 -1.98 16
20 C -0.18 -2.22 9.74 30.62 0.30 -1.92 16
21 C -0.10 -1.50 5.18 30.59 0.16 -1.34 16
22 C -0.11 -2.14 5.10 30.59 0.16 -1.99 16
23 H 0.27 14.72 8.31 -92.71 -0.77 13.95 16
24 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16
25 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16
26 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16
27 H 0.04 2.01 8.14 -2.39 -0.02 2.00 16
28 H 0.41 12.27 7.89 -92.71 -0.73 11.54 16
29 H 0.12 2.23 8.14 -2.39 -0.02 2.22 16
30 H 0.05 1.31 8.10 -2.39 -0.02 1.29 16
31 H 0.06 1.42 8.10 -2.39 -0.02 1.40 16
32 H 0.07 1.07 7.29 -2.39 -0.02 1.05 16
33 H 0.07 1.07 8.14 -2.38 -0.02 1.05 16
34 H 0.06 1.04 7.90 -2.39 -0.02 1.03 16
35 H 0.11 1.27 8.11 -2.39 -0.02 1.25 16
36 H 0.09 1.17 8.05 -2.39 -0.02 1.15 16
37 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16
38 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16
39 H 0.09 1.16 7.61 -2.38 -0.02 1.14 16
40 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16
41 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16
42 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16
43 H 0.08 1.43 7.56 -2.38 -0.02 1.41 16
Total: -1.00 -66.50 343.98 3.04 -63.46
By element:
Atomic # 1 Polarization: 17.65 SS G_CDS: 0.23 Total: 17.89 kcal
Atomic # 6 Polarization: -22.97 SS G_CDS: 3.07 Total: -19.90 kcal
Atomic # 7 Polarization: -79.72 SS G_CDS: -2.24 Total: -81.96 kcal
Atomic # 8 Polarization: -25.30 SS G_CDS: -0.05 Total: -25.35 kcal
Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.86 kcal
Total: -66.50 3.04 -63.46 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000597491631.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -12.484 kcal
(2) G-P(sol) polarization free energy of solvation -66.499 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.983 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.039 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.460 kcal
(6) G-S(sol) free energy of system = (1) + (5) -75.945 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.60 seconds