Wall clock time and date at job start Mon Mar 30 2020 06:35:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86800 * 119.99800 * 2 1 4 4 H 1.48500 * 109.46577 * 239.99659 * 3 2 1 5 5 H 1.48497 * 109.47160 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.46659 * 119.99850 * 3 2 1 7 7 C 1.37881 * 119.99632 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99805 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00130 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.46905 * 179.97438 * 9 7 2 11 11 N 1.46506 * 109.47057 * 179.97438 * 10 9 7 12 12 C 1.34778 * 119.99744 * 179.97438 * 11 10 9 13 13 O 1.21270 * 120.00224 * 0.02562 * 12 11 10 14 14 C 1.50706 * 119.99590 * 180.02562 * 12 11 10 15 15 C 1.52998 * 109.46902 * 180.02562 * 14 12 11 16 16 C 1.52996 * 109.47237 * 179.97438 * 15 14 12 17 17 C 1.53001 * 109.47032 * 300.00423 * 16 15 14 18 18 C 1.53006 * 109.47030 * 179.97438 * 17 16 15 19 19 C 1.53000 * 117.49988 * 128.74828 * 18 17 16 20 20 C 1.52993 * 117.50097 * 60.08275 * 18 17 16 21 21 C 1.52998 * 109.47455 * 59.99711 * 17 16 15 22 22 C 1.52996 * 109.46926 * 299.99943 * 21 17 16 23 23 H 0.96999 * 119.99633 * 0.02562 * 1 2 3 24 24 H 1.08998 * 109.47294 * 59.99814 * 9 7 2 25 25 H 1.09000 * 109.47080 * 299.99663 * 9 7 2 26 26 H 1.08998 * 109.47105 * 59.99933 * 10 9 7 27 27 H 1.09000 * 109.47167 * 299.99843 * 10 9 7 28 28 H 0.96998 * 119.99830 * 0.02562 * 11 10 9 29 29 H 1.08998 * 109.47299 * 60.00122 * 14 12 11 30 30 H 1.08998 * 109.47105 * 59.99928 * 15 14 12 31 31 H 1.09000 * 109.47167 * 299.99838 * 15 14 12 32 32 H 1.08995 * 109.47558 * 180.02562 * 16 15 14 33 33 H 1.09006 * 109.46876 * 59.99755 * 16 15 14 34 34 H 1.08998 * 109.46863 * 299.99686 * 17 16 15 35 35 H 1.08998 * 115.54561 * 274.41168 * 18 17 16 36 36 H 1.09002 * 117.50034 * 359.97438 * 19 18 17 37 37 H 1.08994 * 117.49821 * 145.02184 * 19 18 17 38 38 H 1.08998 * 117.50372 * 214.98185 * 20 18 17 39 39 H 1.09006 * 117.50059 * 359.97438 * 20 18 17 40 40 H 1.08998 * 109.47105 * 60.00123 * 21 17 16 41 41 H 1.09000 * 109.47167 * 180.02562 * 21 17 16 42 42 H 1.08998 * 109.47376 * 300.00015 * 22 21 17 43 43 H 1.09008 * 109.47008 * 179.97438 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1942 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 7 1.5127 -4.9308 0.0012 12 6 2.1866 -6.0980 0.0007 13 8 3.3993 -6.0980 0.0003 14 6 1.4330 -7.4032 0.0008 15 6 2.4273 -8.5661 0.0009 16 6 1.6623 -9.8911 0.0016 17 6 0.7830 -9.9716 1.2511 18 6 0.0175 -11.2964 1.2515 19 6 0.0903 -12.1541 2.5164 20 6 0.8390 -12.5870 1.2534 21 6 -0.2112 -8.8087 1.2510 22 6 0.5538 -7.4837 1.2503 23 1 -0.4849 0.8401 -0.0004 24 1 0.6247 -2.5571 -0.8896 25 1 0.6241 -2.5567 0.8903 26 1 2.8719 -3.6043 0.8905 27 1 2.8719 -3.6044 -0.8895 28 1 0.5427 -4.9308 0.0011 29 1 0.8061 -7.4608 -0.8890 30 1 3.0539 -8.5083 0.8909 31 1 3.0540 -8.5084 -0.8891 32 1 2.3705 -10.7196 0.0022 33 1 1.0353 -9.9491 -0.8882 34 1 1.4099 -9.9136 2.1409 35 1 -0.9203 -11.2976 0.6959 36 1 0.6839 -11.7747 3.3482 37 1 -0.7994 -12.7198 2.7927 38 1 0.4417 -13.4375 0.6995 39 1 1.9250 -12.4925 1.2540 40 1 -0.8381 -8.8668 0.3612 41 1 -0.8374 -8.8659 2.1414 42 1 1.1807 -7.4257 2.1401 43 1 -0.1546 -6.6552 1.2498 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597491631.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:24 Heat of formation + Delta-G solvation = -75.944535 kcal Electronic energy + Delta-G solvation = -19833.605074 eV Core-core repulsion = 16876.752765 eV Total energy + Delta-G solvation = -2956.852309 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.23352 -39.54138 -37.05905 -36.54085 -34.83229 -32.29496 -31.68300 -30.90901 -26.96778 -25.06277 -23.85189 -22.91760 -22.74984 -21.92865 -20.81208 -20.60367 -18.59227 -18.03494 -17.04589 -16.65481 -16.48581 -16.29015 -15.49519 -15.31947 -15.02957 -14.96116 -14.43288 -14.31483 -14.08499 -13.42397 -13.25064 -13.14558 -12.97229 -12.90768 -12.55798 -12.41688 -12.25312 -12.20320 -12.01669 -11.68051 -11.56280 -11.47482 -11.45615 -11.26782 -10.94988 -10.61100 -10.58406 -10.54019 -10.00486 -8.25149 -6.35843 1.40853 1.43166 1.51243 1.67515 2.27995 2.46343 2.97192 3.09333 3.57446 3.69390 3.82212 3.97105 4.08931 4.11774 4.27617 4.39278 4.44598 4.47225 4.50516 4.55982 4.60475 4.62446 4.69274 4.83541 4.84904 4.91826 5.01666 5.10940 5.17490 5.20994 5.27273 5.28719 5.32575 5.35183 5.38130 5.46886 5.50539 5.56868 5.63976 5.77729 6.15308 6.64983 6.77071 7.30592 7.33431 8.86477 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.049083 B = 0.002954 C = 0.002844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 570.328320 B = 9475.400650 C = 9842.334642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.008 3.992 3 Si 0.965 3.035 4 H -0.269 1.269 5 H -0.279 1.279 6 H -0.269 1.269 7 C -0.549 4.549 8 H 0.057 0.943 9 C 0.024 3.976 10 C 0.140 3.860 11 N -0.717 5.717 12 C 0.505 3.495 13 O -0.594 6.594 14 C -0.096 4.096 15 C -0.096 4.096 16 C -0.102 4.102 17 C -0.056 4.056 18 C -0.146 4.146 19 C -0.185 4.185 20 C -0.182 4.182 21 C -0.102 4.102 22 C -0.109 4.109 23 H 0.266 0.734 24 H 0.009 0.991 25 H 0.009 0.991 26 H 0.043 0.957 27 H 0.043 0.957 28 H 0.410 0.590 29 H 0.117 0.883 30 H 0.050 0.950 31 H 0.056 0.944 32 H 0.069 0.931 33 H 0.074 0.926 34 H 0.061 0.939 35 H 0.111 0.889 36 H 0.089 0.911 37 H 0.099 0.901 38 H 0.100 0.900 39 H 0.091 0.909 40 H 0.078 0.922 41 H 0.074 0.926 42 H 0.054 0.946 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.428 -23.955 2.065 24.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.191 4.191 3 Si 0.789 3.211 4 H -0.194 1.194 5 H -0.204 1.204 6 H -0.194 1.194 7 C -0.588 4.588 8 H 0.075 0.925 9 C -0.013 4.013 10 C 0.016 3.984 11 N -0.368 5.368 12 C 0.293 3.707 13 O -0.475 6.475 14 C -0.117 4.117 15 C -0.134 4.134 16 C -0.139 4.139 17 C -0.075 4.075 18 C -0.165 4.165 19 C -0.222 4.222 20 C -0.219 4.219 21 C -0.139 4.139 22 C -0.147 4.147 23 H 0.075 0.925 24 H 0.027 0.973 25 H 0.027 0.973 26 H 0.061 0.939 27 H 0.062 0.938 28 H 0.246 0.754 29 H 0.135 0.865 30 H 0.069 0.931 31 H 0.075 0.925 32 H 0.088 0.912 33 H 0.093 0.907 34 H 0.079 0.921 35 H 0.129 0.871 36 H 0.108 0.892 37 H 0.118 0.882 38 H 0.118 0.882 39 H 0.109 0.891 40 H 0.097 0.903 41 H 0.093 0.907 42 H 0.073 0.927 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -2.725 -23.823 2.067 24.067 hybrid contribution 0.122 1.251 0.042 1.257 sum -2.603 -22.572 2.108 22.819 Atomic orbital electron populations 1.70051 1.07508 1.28107 1.50868 1.25873 0.95818 1.03077 0.94353 0.85504 0.78331 0.78139 0.79119 1.19362 1.20449 1.19368 1.21446 0.93537 0.92039 1.51763 0.92460 1.19115 0.94168 0.91695 0.96341 1.21200 0.95081 0.82642 0.99511 1.46201 1.11055 1.05622 1.73931 1.21511 0.87905 0.86648 0.74619 1.90633 1.16251 1.88503 1.52097 1.21390 0.97935 0.90087 1.02272 1.21302 0.96707 0.93476 1.01894 1.21519 0.98361 0.95525 0.98499 1.20750 0.95878 0.92859 0.97997 1.22333 1.01089 0.91066 1.01967 1.23078 1.03112 1.04092 0.91894 1.22999 0.98968 0.98335 1.01625 1.21507 0.97267 0.91810 1.03343 1.21541 0.98023 0.99672 0.95453 0.92479 0.97299 0.97278 0.93896 0.93820 0.75411 0.86514 0.93132 0.92507 0.91193 0.90691 0.92099 0.87118 0.89237 0.88239 0.88175 0.89066 0.90291 0.90718 0.92683 0.90628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.45 13.29 21.45 0.28 -54.16 16 2 C 0.01 0.43 5.46 84.65 0.46 0.89 16 3 Si 0.96 43.83 29.54 68.60 2.03 45.86 16 4 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 5 H -0.28 -12.27 7.11 99.48 0.71 -11.57 16 6 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 7 C -0.55 -31.06 9.11 25.60 0.23 -30.83 16 8 H 0.06 3.17 7.74 -2.91 -0.02 3.15 16 9 C 0.02 1.24 5.09 29.85 0.15 1.39 16 10 C 0.14 6.15 5.61 86.38 0.48 6.64 16 11 N -0.72 -25.27 5.45 -463.05 -2.52 -27.80 16 12 C 0.51 17.16 7.15 87.66 0.63 17.79 16 13 O -0.59 -25.30 15.98 -3.00 -0.05 -25.35 16 14 C -0.10 -2.22 2.53 -11.54 -0.03 -2.25 16 15 C -0.10 -2.17 4.49 30.59 0.14 -2.03 16 16 C -0.10 -1.64 5.04 30.59 0.15 -1.48 16 17 C -0.06 -0.84 2.34 -10.79 -0.03 -0.87 16 18 C -0.15 -1.87 5.14 -10.79 -0.06 -1.92 16 19 C -0.18 -2.29 10.18 30.62 0.31 -1.98 16 20 C -0.18 -2.22 9.74 30.62 0.30 -1.92 16 21 C -0.10 -1.50 5.18 30.59 0.16 -1.34 16 22 C -0.11 -2.14 5.10 30.59 0.16 -1.99 16 23 H 0.27 14.72 8.31 -92.71 -0.77 13.95 16 24 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 25 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 26 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16 27 H 0.04 2.01 8.14 -2.39 -0.02 2.00 16 28 H 0.41 12.27 7.89 -92.71 -0.73 11.54 16 29 H 0.12 2.23 8.14 -2.39 -0.02 2.22 16 30 H 0.05 1.31 8.10 -2.39 -0.02 1.29 16 31 H 0.06 1.42 8.10 -2.39 -0.02 1.40 16 32 H 0.07 1.07 7.29 -2.39 -0.02 1.05 16 33 H 0.07 1.07 8.14 -2.38 -0.02 1.05 16 34 H 0.06 1.04 7.90 -2.39 -0.02 1.03 16 35 H 0.11 1.27 8.11 -2.39 -0.02 1.25 16 36 H 0.09 1.17 8.05 -2.39 -0.02 1.15 16 37 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 39 H 0.09 1.16 7.61 -2.38 -0.02 1.14 16 40 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 41 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 42 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 43 H 0.08 1.43 7.56 -2.38 -0.02 1.41 16 Total: -1.00 -66.50 343.98 3.04 -63.46 By element: Atomic # 1 Polarization: 17.65 SS G_CDS: 0.23 Total: 17.89 kcal Atomic # 6 Polarization: -22.97 SS G_CDS: 3.07 Total: -19.90 kcal Atomic # 7 Polarization: -79.72 SS G_CDS: -2.24 Total: -81.96 kcal Atomic # 8 Polarization: -25.30 SS G_CDS: -0.05 Total: -25.35 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.86 kcal Total: -66.50 3.04 -63.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597491631.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.484 kcal (2) G-P(sol) polarization free energy of solvation -66.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds