Wall clock time and date at job start Mon Mar 30 2020 08:26:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 112.85348 * 2 1 4 4 C 1.53785 * 113.61687 * 131.20007 * 2 1 3 5 5 C 1.53772 * 87.17503 * 139.93534 * 4 2 1 6 6 C 1.53787 * 113.61280 * 228.69303 * 2 1 3 7 7 H 1.09003 * 113.61487 * 334.65242 * 6 2 1 8 8 C 1.50698 * 113.61303 * 105.47133 * 6 2 1 9 9 O 1.21286 * 120.00132 * 346.53039 * 8 6 2 10 10 N 1.34776 * 120.00380 * 166.53422 * 8 6 2 11 11 C 1.46930 * 120.62607 * 359.71433 * 10 8 6 12 12 C 1.53632 * 108.53807 * 126.37155 * 11 10 8 13 13 C 1.53038 * 109.24287 * 54.85979 * 12 11 10 14 14 C 1.50700 * 109.46158 * 178.48951 * 13 12 11 15 15 H 1.08000 * 119.99920 * 120.06217 * 14 13 12 16 16 C 1.37872 * 119.99692 * 300.06835 * 14 13 12 17 17 N 1.31514 * 120.00393 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 120.00042 * 179.97438 * 16 14 13 19 19 H 1.48505 * 109.46836 * 359.97438 * 18 16 14 20 20 H 1.48493 * 109.47267 * 119.99672 * 18 16 14 21 21 H 1.48499 * 109.47543 * 240.00173 * 18 16 14 22 22 C 1.53040 * 109.53613 * 298.50770 * 13 12 11 23 23 C 1.46919 * 120.63513 * 180.02562 * 10 8 6 24 24 H 1.09003 * 109.46937 * 308.30315 * 1 2 3 25 25 H 1.08992 * 109.47272 * 68.30765 * 1 2 3 26 26 H 1.08998 * 109.47133 * 188.30935 * 1 2 3 27 27 H 1.08995 * 109.47216 * 196.66415 * 3 2 1 28 28 H 1.09000 * 109.46747 * 316.66741 * 3 2 1 29 29 H 1.09001 * 109.46990 * 76.66326 * 3 2 1 30 30 H 1.08997 * 113.61360 * 254.53243 * 4 2 1 31 31 H 1.08998 * 113.61224 * 25.34748 * 4 2 1 32 32 H 1.09003 * 113.61673 * 89.15719 * 5 4 2 33 33 H 1.09002 * 113.61543 * 220.05930 * 5 4 2 34 34 H 1.08990 * 109.59038 * 246.20331 * 11 10 8 35 35 H 1.09003 * 109.58757 * 6.63541 * 11 10 8 36 36 H 1.08994 * 109.63235 * 294.86403 * 12 11 10 37 37 H 1.09001 * 109.45551 * 174.74527 * 12 11 10 38 38 H 1.08996 * 109.45256 * 58.51703 * 13 12 11 39 39 H 0.96994 * 120.00445 * 180.02562 * 17 16 14 40 40 H 1.09003 * 109.50035 * 301.41420 * 22 13 12 41 41 H 1.08999 * 109.52721 * 181.33188 * 22 13 12 42 42 H 1.08998 * 109.58589 * 353.36968 * 23 10 8 43 43 H 1.09003 * 109.58722 * 113.65153 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1242 1.4099 0.0000 4 6 2.1461 -0.9281 1.0602 5 6 3.1927 -1.3160 0.0025 6 6 2.1460 -0.9301 -1.0585 7 1 1.4939 -1.7541 -1.3484 8 6 2.7253 -0.1982 -2.2416 9 8 2.4675 0.9742 -2.4150 10 7 3.5298 -0.8463 -3.1071 11 6 3.8562 -2.2648 -2.9070 12 6 3.5161 -3.0307 -4.1946 13 6 4.2408 -2.3798 -5.3750 14 6 3.9400 -3.1496 -6.6351 15 1 3.4570 -2.6574 -7.4663 16 6 4.2814 -4.4823 -6.7268 17 7 4.8699 -5.0816 -5.7148 18 14 3.9080 -5.4368 -8.2885 19 1 3.2466 -4.5402 -9.2704 20 1 5.1737 -5.9560 -8.8659 21 1 3.0061 -6.5729 -7.9707 22 6 3.7637 -0.9345 -5.5344 23 6 4.1026 -0.1461 -4.2648 24 1 -0.3633 0.6370 0.8065 25 1 -0.3633 0.3798 -0.9548 26 1 -0.3633 -1.0169 0.1485 27 1 3.1725 1.3624 -0.2947 28 1 1.5765 2.0350 -0.7052 29 1 2.0469 1.8368 1.0000 30 1 2.5650 -0.3971 1.9149 31 1 1.4940 -1.7515 1.3516 32 1 4.0725 -0.6724 0.0021 33 1 3.4431 -2.3769 0.0045 34 1 4.9188 -2.3679 -2.6872 35 1 3.2694 -2.6615 -2.0785 36 1 2.4402 -2.9992 -4.3661 37 1 3.8386 -4.0673 -4.0965 38 1 5.3151 -2.3893 -5.1913 39 1 5.1104 -6.0190 -5.7795 40 1 2.6854 -0.9226 -5.6933 41 1 4.2624 -0.4784 -6.3896 42 1 3.6784 0.8557 -4.3324 43 1 5.1846 -0.0780 -4.1520 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597497398.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:26:43 Heat of formation + Delta-G solvation = -33.544822 kcal Electronic energy + Delta-G solvation = -21329.847127 eV Core-core repulsion = 18374.833408 eV Total energy + Delta-G solvation = -2955.013719 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.71112 -38.27096 -36.48302 -33.52445 -31.51361 -30.43116 -30.01805 -27.31184 -27.09925 -25.68333 -23.04241 -22.47818 -22.15110 -20.14656 -18.60421 -17.88058 -16.93667 -16.14797 -15.49226 -15.25749 -14.56427 -14.37225 -13.95106 -13.77036 -13.20374 -13.13800 -13.03654 -12.79236 -12.60542 -12.21880 -12.03060 -11.81453 -11.61505 -11.48537 -11.24319 -11.14376 -10.96803 -10.71401 -10.61616 -10.41149 -10.29490 -10.08386 -10.02214 -9.61620 -9.16432 -9.08414 -8.85898 -8.38963 -7.93418 -6.04375 -4.10423 3.06129 3.26159 3.34778 3.38990 3.55536 4.39950 4.43163 4.56584 4.69965 4.77150 5.15914 5.25321 5.29433 5.48852 5.60036 5.62101 5.70071 5.75434 5.81125 5.83872 5.89654 5.98375 6.01388 6.06465 6.10223 6.15674 6.17325 6.28722 6.31513 6.45503 6.48524 6.63323 6.68116 6.91980 7.05121 7.17366 7.28976 7.66204 7.91382 8.00286 8.04295 8.39509 8.67149 8.93351 9.54855 11.01123 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.033518 B = 0.004728 C = 0.004497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.177985 B = 5920.884849 C = 6224.542775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.062 4.062 3 C -0.112 4.112 4 C -0.134 4.134 5 C -0.125 4.125 6 C -0.127 4.127 7 H 0.112 0.888 8 C 0.520 3.480 9 O -0.555 6.555 10 N -0.599 5.599 11 C 0.104 3.896 12 C -0.124 4.124 13 C 0.048 3.952 14 C -0.511 4.511 15 H 0.055 0.945 16 C 0.061 3.939 17 N -0.892 5.892 18 Si 0.890 3.110 19 H -0.274 1.274 20 H -0.284 1.284 21 H -0.284 1.284 22 C -0.122 4.122 23 C 0.111 3.889 24 H 0.055 0.945 25 H 0.058 0.942 26 H 0.053 0.947 27 H 0.054 0.946 28 H 0.070 0.930 29 H 0.041 0.959 30 H 0.069 0.931 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.076 0.924 34 H 0.060 0.940 35 H 0.068 0.932 36 H 0.038 0.962 37 H 0.103 0.897 38 H 0.027 0.973 39 H 0.260 0.740 40 H 0.051 0.949 41 H 0.059 0.941 42 H 0.077 0.923 43 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.116 6.237 12.547 14.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.062 4.062 3 C -0.169 4.169 4 C -0.172 4.172 5 C -0.163 4.163 6 C -0.148 4.148 7 H 0.130 0.870 8 C 0.308 3.692 9 O -0.434 6.434 10 N -0.331 5.331 11 C -0.018 4.018 12 C -0.162 4.162 13 C 0.030 3.970 14 C -0.549 4.549 15 H 0.073 0.927 16 C -0.139 4.139 17 N -0.531 5.531 18 Si 0.718 3.282 19 H -0.198 1.198 20 H -0.210 1.210 21 H -0.211 1.211 22 C -0.161 4.161 23 C -0.011 4.011 24 H 0.074 0.926 25 H 0.077 0.923 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.089 0.911 29 H 0.060 0.940 30 H 0.087 0.913 31 H 0.100 0.900 32 H 0.101 0.899 33 H 0.095 0.905 34 H 0.078 0.922 35 H 0.087 0.913 36 H 0.057 0.943 37 H 0.121 0.879 38 H 0.045 0.955 39 H 0.070 0.930 40 H 0.070 0.930 41 H 0.077 0.923 42 H 0.095 0.905 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -4.167 6.671 12.482 14.754 hybrid contribution -0.123 -0.870 -0.985 1.320 sum -4.291 5.801 11.498 13.575 Atomic orbital electron populations 1.21726 0.94188 1.01373 1.01930 1.21676 0.95242 0.95121 0.94210 1.21544 1.01186 0.94153 1.00003 1.23044 0.98154 0.99306 0.96664 1.22877 0.96762 1.01897 0.94736 1.22895 0.99392 0.99766 0.92752 0.87042 1.20412 0.78517 0.86988 0.83266 1.90619 1.61182 1.16437 1.75175 1.48262 1.47544 1.12023 1.25286 1.22132 0.99931 0.79504 1.00236 1.22096 0.99224 1.02261 0.92656 1.18635 0.95557 0.88969 0.93862 1.21256 1.38767 0.95032 0.99864 0.92674 1.24953 0.94990 0.97728 0.96277 1.69843 1.41608 1.11382 1.30298 0.86569 0.78002 0.79958 0.83679 1.19836 1.21039 1.21064 1.22003 1.00703 0.98687 0.94672 1.21671 0.97226 0.96365 0.85825 0.92633 0.92290 0.92751 0.92721 0.91091 0.93987 0.91265 0.89966 0.89905 0.90518 0.92162 0.91318 0.94324 0.87865 0.95513 0.93049 0.93038 0.92276 0.90478 0.92468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.49 9.15 37.16 0.34 -1.15 16 2 C -0.06 -0.75 1.23 -153.69 -0.19 -0.94 16 3 C -0.11 -1.47 7.39 37.16 0.27 -1.20 16 4 C -0.13 -1.37 7.22 -25.92 -0.19 -1.56 16 5 C -0.13 -1.45 6.26 -25.83 -0.16 -1.61 16 6 C -0.13 -1.74 2.33 -90.87 -0.21 -1.95 16 7 H 0.11 1.48 7.83 -51.93 -0.41 1.08 16 8 C 0.52 8.99 6.62 -10.99 -0.07 8.92 16 9 O -0.55 -10.79 12.82 5.55 0.07 -10.72 16 10 N -0.60 -10.79 2.97 -172.47 -0.51 -11.30 16 11 C 0.10 1.85 6.00 -3.48 -0.02 1.83 16 12 C -0.12 -2.72 5.17 -26.38 -0.14 -2.86 16 13 C 0.05 1.15 2.06 -91.73 -0.19 0.96 16 14 C -0.51 -13.63 8.56 -34.44 -0.29 -13.92 16 15 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 16 C 0.06 1.64 5.30 -17.82 -0.09 1.55 16 17 N -0.89 -24.35 11.31 55.43 0.63 -23.73 16 18 Si 0.89 20.81 29.54 -169.99 -5.02 15.79 16 19 H -0.27 -6.38 7.11 56.52 0.40 -5.97 16 20 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 21 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 22 C -0.12 -2.54 5.30 -26.59 -0.14 -2.68 16 23 C 0.11 2.07 6.43 -3.69 -0.02 2.05 16 24 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.05 0.54 8.01 -51.93 -0.42 0.12 16 27 H 0.05 0.79 6.41 -51.93 -0.33 0.46 16 28 H 0.07 1.05 7.15 -51.93 -0.37 0.68 16 29 H 0.04 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.07 0.65 8.10 -51.93 -0.42 0.23 16 31 H 0.08 0.75 8.01 -51.93 -0.42 0.33 16 32 H 0.08 1.01 7.69 -51.93 -0.40 0.61 16 33 H 0.08 0.82 7.59 -51.93 -0.39 0.43 16 34 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.07 1.05 5.13 -51.93 -0.27 0.79 16 36 H 0.04 0.87 8.14 -51.93 -0.42 0.44 16 37 H 0.10 2.52 6.03 -51.93 -0.31 2.20 16 38 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.26 6.78 8.31 -40.82 -0.34 6.44 16 40 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 41 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 42 H 0.08 1.43 7.00 -51.93 -0.36 1.07 16 43 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 325.25 15.07 4.90 4.90 Total: -1.00 -28.21 325.25 -8.49 -36.70 By element: Atomic # 1 Polarization: 8.39 SS G_CDS: -7.45 Total: 0.94 kcal Atomic # 6 Polarization: -11.47 SS G_CDS: -1.11 Total: -12.58 kcal Atomic # 7 Polarization: -35.14 SS G_CDS: 0.12 Total: -35.03 kcal Atomic # 8 Polarization: -10.79 SS G_CDS: 0.07 Total: -10.72 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -28.21 -8.49 -36.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597497398.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.151 kcal (2) G-P(sol) polarization free energy of solvation -28.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds