Wall clock time and date at job start Mon Mar 30 2020 08:26:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 112.85348 * 2 1 4 4 C 1.53785 * 113.61687 * 131.20007 * 2 1 3 5 5 C 1.53772 * 87.17503 * 139.93534 * 4 2 1 6 6 C 1.53787 * 113.61280 * 228.69303 * 2 1 3 7 7 H 1.09003 * 113.61487 * 334.65242 * 6 2 1 8 8 C 1.50698 * 113.61303 * 105.47133 * 6 2 1 9 9 O 1.21286 * 120.00132 * 346.53039 * 8 6 2 10 10 N 1.34776 * 120.00380 * 166.53422 * 8 6 2 11 11 C 1.46930 * 120.62607 * 359.71433 * 10 8 6 12 12 C 1.53632 * 108.53807 * 126.37155 * 11 10 8 13 13 C 1.53038 * 109.24287 * 54.85979 * 12 11 10 14 14 C 1.50700 * 109.46158 * 178.48951 * 13 12 11 15 15 H 1.08000 * 119.99920 * 120.06217 * 14 13 12 16 16 C 1.37872 * 119.99692 * 300.06835 * 14 13 12 17 17 N 1.31514 * 120.00393 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 120.00042 * 179.97438 * 16 14 13 19 19 H 1.48505 * 109.46836 * 359.97438 * 18 16 14 20 20 H 1.48493 * 109.47267 * 119.99672 * 18 16 14 21 21 H 1.48499 * 109.47543 * 240.00173 * 18 16 14 22 22 C 1.53040 * 109.53613 * 298.50770 * 13 12 11 23 23 C 1.46919 * 120.63513 * 180.02562 * 10 8 6 24 24 H 1.09003 * 109.46937 * 308.30315 * 1 2 3 25 25 H 1.08992 * 109.47272 * 68.30765 * 1 2 3 26 26 H 1.08998 * 109.47133 * 188.30935 * 1 2 3 27 27 H 1.08995 * 109.47216 * 196.66415 * 3 2 1 28 28 H 1.09000 * 109.46747 * 316.66741 * 3 2 1 29 29 H 1.09001 * 109.46990 * 76.66326 * 3 2 1 30 30 H 1.08997 * 113.61360 * 254.53243 * 4 2 1 31 31 H 1.08998 * 113.61224 * 25.34748 * 4 2 1 32 32 H 1.09003 * 113.61673 * 89.15719 * 5 4 2 33 33 H 1.09002 * 113.61543 * 220.05930 * 5 4 2 34 34 H 1.08990 * 109.59038 * 246.20331 * 11 10 8 35 35 H 1.09003 * 109.58757 * 6.63541 * 11 10 8 36 36 H 1.08994 * 109.63235 * 294.86403 * 12 11 10 37 37 H 1.09001 * 109.45551 * 174.74527 * 12 11 10 38 38 H 1.08996 * 109.45256 * 58.51703 * 13 12 11 39 39 H 0.96994 * 120.00445 * 180.02562 * 17 16 14 40 40 H 1.09003 * 109.50035 * 301.41420 * 22 13 12 41 41 H 1.08999 * 109.52721 * 181.33188 * 22 13 12 42 42 H 1.08998 * 109.58589 * 353.36968 * 23 10 8 43 43 H 1.09003 * 109.58722 * 113.65153 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1242 1.4099 0.0000 4 6 2.1461 -0.9281 1.0602 5 6 3.1927 -1.3160 0.0025 6 6 2.1460 -0.9301 -1.0585 7 1 1.4939 -1.7541 -1.3484 8 6 2.7253 -0.1982 -2.2416 9 8 2.4675 0.9742 -2.4150 10 7 3.5298 -0.8463 -3.1071 11 6 3.8562 -2.2648 -2.9070 12 6 3.5161 -3.0307 -4.1946 13 6 4.2408 -2.3798 -5.3750 14 6 3.9400 -3.1496 -6.6351 15 1 3.4570 -2.6574 -7.4663 16 6 4.2814 -4.4823 -6.7268 17 7 4.8699 -5.0816 -5.7148 18 14 3.9080 -5.4368 -8.2885 19 1 3.2466 -4.5402 -9.2704 20 1 5.1737 -5.9560 -8.8659 21 1 3.0061 -6.5729 -7.9707 22 6 3.7637 -0.9345 -5.5344 23 6 4.1026 -0.1461 -4.2648 24 1 -0.3633 0.6370 0.8065 25 1 -0.3633 0.3798 -0.9548 26 1 -0.3633 -1.0169 0.1485 27 1 3.1725 1.3624 -0.2947 28 1 1.5765 2.0350 -0.7052 29 1 2.0469 1.8368 1.0000 30 1 2.5650 -0.3971 1.9149 31 1 1.4940 -1.7515 1.3516 32 1 4.0725 -0.6724 0.0021 33 1 3.4431 -2.3769 0.0045 34 1 4.9188 -2.3679 -2.6872 35 1 3.2694 -2.6615 -2.0785 36 1 2.4402 -2.9992 -4.3661 37 1 3.8386 -4.0673 -4.0965 38 1 5.3151 -2.3893 -5.1913 39 1 5.1104 -6.0190 -5.7795 40 1 2.6854 -0.9226 -5.6933 41 1 4.2624 -0.4784 -6.3896 42 1 3.6784 0.8557 -4.3324 43 1 5.1846 -0.0780 -4.1520 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597497398.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:26:43 Heat of formation + Delta-G solvation = -47.526415 kcal Electronic energy + Delta-G solvation = -21330.453414 eV Core-core repulsion = 18374.833408 eV Total energy + Delta-G solvation = -2955.620007 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.89334 -39.59862 -38.00284 -35.33600 -33.19768 -31.79981 -31.36085 -28.54420 -28.24512 -27.24008 -24.64027 -23.90491 -23.33541 -21.68545 -20.06291 -19.02159 -18.58141 -17.88775 -16.87396 -16.49629 -16.39728 -15.51496 -15.17369 -15.02608 -14.81517 -14.55243 -14.44835 -14.08331 -14.06126 -13.64477 -13.27791 -13.18939 -12.96368 -12.83536 -12.74518 -12.43622 -12.40155 -12.15183 -12.14527 -11.94850 -11.68187 -11.44098 -11.25898 -11.02224 -10.94642 -10.82126 -10.43681 -10.27020 -9.48146 -8.08458 -6.21781 1.39700 1.43067 1.53010 1.71006 2.16904 2.43734 3.17960 3.44938 3.61584 3.63478 3.86528 3.98001 4.21347 4.27622 4.36765 4.39156 4.49773 4.56835 4.58445 4.67880 4.73708 4.81388 4.86314 4.87760 4.95710 4.98551 5.04477 5.06863 5.16461 5.19398 5.23075 5.28071 5.34020 5.43646 5.53194 5.59146 5.63692 5.67644 5.98063 6.13443 6.38931 6.59501 6.87581 7.28272 7.46063 8.95154 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.033518 B = 0.004728 C = 0.004497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.177985 B = 5920.884849 C = 6224.542775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.067 4.067 3 C -0.107 4.107 4 C -0.117 4.117 5 C -0.123 4.123 6 C -0.135 4.135 7 H 0.120 0.880 8 C 0.516 3.484 9 O -0.579 6.579 10 N -0.605 5.605 11 C 0.118 3.882 12 C -0.115 4.115 13 C 0.046 3.954 14 C -0.536 4.536 15 H 0.045 0.955 16 C 0.019 3.981 17 N -0.911 5.911 18 Si 0.948 3.052 19 H -0.274 1.274 20 H -0.280 1.280 21 H -0.279 1.279 22 C -0.112 4.112 23 C 0.117 3.883 24 H 0.069 0.931 25 H 0.038 0.962 26 H 0.068 0.932 27 H 0.036 0.964 28 H 0.046 0.954 29 H 0.063 0.937 30 H 0.082 0.918 31 H 0.101 0.899 32 H 0.075 0.925 33 H 0.090 0.910 34 H 0.063 0.937 35 H 0.099 0.901 36 H 0.026 0.974 37 H 0.080 0.920 38 H 0.003 0.997 39 H 0.262 0.738 40 H 0.039 0.961 41 H 0.061 0.939 42 H 0.077 0.923 43 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.690 5.710 14.220 16.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.067 4.067 3 C -0.164 4.164 4 C -0.154 4.154 5 C -0.160 4.160 6 C -0.156 4.156 7 H 0.138 0.862 8 C 0.306 3.694 9 O -0.460 6.460 10 N -0.337 5.337 11 C -0.004 4.004 12 C -0.154 4.154 13 C 0.027 3.973 14 C -0.574 4.574 15 H 0.064 0.936 16 C -0.180 4.180 17 N -0.551 5.551 18 Si 0.775 3.225 19 H -0.198 1.198 20 H -0.206 1.206 21 H -0.205 1.205 22 C -0.151 4.151 23 C -0.006 4.006 24 H 0.088 0.912 25 H 0.057 0.943 26 H 0.087 0.913 27 H 0.055 0.945 28 H 0.065 0.935 29 H 0.082 0.918 30 H 0.101 0.899 31 H 0.120 0.880 32 H 0.093 0.907 33 H 0.108 0.892 34 H 0.082 0.918 35 H 0.117 0.883 36 H 0.045 0.955 37 H 0.098 0.902 38 H 0.021 0.979 39 H 0.071 0.929 40 H 0.058 0.942 41 H 0.080 0.920 42 H 0.096 0.904 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -4.744 6.148 14.165 16.154 hybrid contribution 0.061 -0.659 -1.543 1.679 sum -4.683 5.489 12.622 14.538 Atomic orbital electron populations 1.21716 0.93337 1.02535 1.01421 1.21751 0.95958 0.94522 0.94506 1.21460 0.99653 0.94830 1.00482 1.22997 0.97273 0.99112 0.96051 1.22897 0.96371 1.02559 0.94187 1.23088 1.00574 1.00267 0.91684 0.86249 1.21133 0.77641 0.86894 0.83735 1.90612 1.61782 1.17754 1.75872 1.48329 1.47964 1.12028 1.25355 1.21973 1.00672 0.78944 0.98820 1.21871 0.97951 1.01402 0.94157 1.18604 0.94299 0.90623 0.93770 1.21569 1.39149 0.95831 1.00829 0.93646 1.25611 0.94872 0.98500 0.98977 1.69945 1.41894 1.11643 1.31579 0.85657 0.77878 0.78623 0.80385 1.19822 1.20593 1.20488 1.21848 0.99713 0.97326 0.96178 1.21535 0.97861 0.95966 0.85225 0.91218 0.94269 0.91253 0.94513 0.93478 0.91825 0.89940 0.88042 0.90674 0.89172 0.91826 0.88292 0.95486 0.90185 0.97909 0.92868 0.94205 0.92046 0.90433 0.91558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.63 9.15 71.98 0.66 -1.97 16 2 C -0.07 -1.47 1.23 -51.65 -0.06 -1.53 16 3 C -0.11 -2.68 7.39 71.98 0.53 -2.15 16 4 C -0.12 -1.94 7.22 31.12 0.22 -1.72 16 5 C -0.12 -2.48 6.26 31.18 0.20 -2.29 16 6 C -0.14 -3.43 2.33 -10.95 -0.03 -3.45 16 7 H 0.12 2.87 7.83 -2.39 -0.02 2.85 16 8 C 0.52 17.41 6.62 87.66 0.58 17.99 16 9 O -0.58 -22.53 12.82 -3.05 -0.04 -22.57 16 10 N -0.60 -21.39 2.97 -817.97 -2.43 -23.82 16 11 C 0.12 4.07 6.00 86.51 0.52 4.59 16 12 C -0.12 -5.09 5.17 30.82 0.16 -4.93 16 13 C 0.05 2.21 2.06 -11.51 -0.02 2.19 16 14 C -0.54 -29.10 8.56 25.60 0.22 -28.88 16 15 H 0.05 2.48 7.74 -2.91 -0.02 2.46 16 16 C 0.02 1.05 5.30 84.65 0.45 1.49 16 17 N -0.91 -50.07 11.31 21.45 0.24 -49.82 16 18 Si 0.95 42.80 29.54 68.60 2.03 44.83 16 19 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 20 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 21 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 22 C -0.11 -4.74 5.30 30.69 0.16 -4.57 16 23 C 0.12 4.34 6.43 86.38 0.56 4.89 16 24 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 25 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 26 H 0.07 1.16 8.01 -2.39 -0.02 1.14 16 27 H 0.04 1.03 6.41 -2.39 -0.02 1.01 16 28 H 0.05 1.38 7.15 -2.39 -0.02 1.37 16 29 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.08 1.20 8.10 -2.39 -0.02 1.18 16 31 H 0.10 1.35 8.01 -2.39 -0.02 1.33 16 32 H 0.07 1.66 7.69 -2.39 -0.02 1.65 16 33 H 0.09 1.60 7.59 -2.39 -0.02 1.58 16 34 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 35 H 0.10 2.82 5.13 -2.39 -0.01 2.80 16 36 H 0.03 1.21 8.14 -2.39 -0.02 1.20 16 37 H 0.08 3.94 6.03 -2.39 -0.01 3.93 16 38 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 39 H 0.26 13.67 8.31 -92.71 -0.77 12.90 16 40 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 41 H 0.06 2.50 8.14 -2.39 -0.02 2.49 16 42 H 0.08 2.88 7.00 -2.39 -0.02 2.87 16 43 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 Total: -1.00 -61.07 325.25 4.91 -56.15 By element: Atomic # 1 Polarization: 14.60 SS G_CDS: 0.96 Total: 15.57 kcal Atomic # 6 Polarization: -24.48 SS G_CDS: 4.14 Total: -20.34 kcal Atomic # 7 Polarization: -71.46 SS G_CDS: -2.18 Total: -73.64 kcal Atomic # 8 Polarization: -22.53 SS G_CDS: -0.04 Total: -22.57 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 2.03 Total: 44.83 kcal Total: -61.07 4.91 -56.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597497398.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.628 kcal (2) G-P(sol) polarization free energy of solvation -61.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds