Wall clock time and date at job start Mon Mar 30 2020 06:31:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53008 * 109.46770 * 2 1 4 4 C 1.50700 * 109.47704 * 119.99659 * 2 1 3 5 5 N 1.30828 * 125.83597 * 299.98343 * 4 2 1 6 6 N 1.40068 * 108.37468 * 180.02562 * 5 4 2 7 7 C 1.46494 * 126.05476 * 180.02562 * 6 5 4 8 8 C 1.35819 * 107.88838 * 359.76791 * 6 5 4 9 9 C 1.35753 * 107.56124 * 0.36833 * 8 6 5 10 10 N 1.40764 * 126.07684 * 179.90001 * 9 8 6 11 11 C 1.34774 * 119.99952 * 359.68742 * 10 9 8 12 12 O 1.21306 * 120.00390 * 0.02562 * 11 10 9 13 13 C 1.50708 * 120.00011 * 179.97438 * 11 10 9 14 14 H 1.09002 * 109.46828 * 60.00113 * 13 11 10 15 15 C 1.52997 * 109.47141 * 300.00244 * 13 11 10 16 16 C 1.50697 * 109.47025 * 179.97438 * 13 11 10 17 17 H 1.07999 * 120.00055 * 0.02562 * 16 13 11 18 18 C 1.37878 * 119.99687 * 180.02562 * 16 13 11 19 19 N 1.31511 * 120.00458 * 359.97438 * 18 16 13 20 20 Si 1.86805 * 119.99926 * 180.02562 * 18 16 13 21 21 H 1.48503 * 109.46980 * 89.99582 * 20 18 16 22 22 H 1.48493 * 109.47135 * 209.99651 * 20 18 16 23 23 H 1.48498 * 109.47274 * 330.00048 * 20 18 16 24 24 H 1.09005 * 109.46940 * 299.99789 * 1 2 3 25 25 H 1.08999 * 109.47520 * 59.99744 * 1 2 3 26 26 H 1.09001 * 109.47035 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47478 * 240.00118 * 2 1 3 28 28 H 1.09000 * 109.46924 * 300.00011 * 3 2 1 29 29 H 1.08996 * 109.47028 * 60.00397 * 3 2 1 30 30 H 1.09005 * 109.46694 * 179.97438 * 3 2 1 31 31 H 1.09004 * 109.47419 * 89.97324 * 7 6 5 32 32 H 1.09001 * 109.47167 * 209.96988 * 7 6 5 33 33 H 1.09000 * 109.47293 * 329.97032 * 7 6 5 34 34 H 1.08001 * 126.21772 * 180.22902 * 8 6 5 35 35 H 0.96998 * 119.99923 * 179.68671 * 10 9 8 36 36 H 1.09002 * 109.47153 * 299.99670 * 15 13 11 37 37 H 1.09001 * 109.46832 * 179.97438 * 15 13 11 38 38 H 1.09004 * 109.47261 * 59.99842 * 15 13 11 39 39 H 0.96999 * 120.00480 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0324 -0.7103 1.2305 5 7 1.7881 -0.3641 2.4682 6 7 2.4321 -1.2738 3.3165 7 6 2.4142 -1.2483 4.7811 8 6 3.0714 -2.1870 2.5406 9 6 2.8423 -1.8553 1.2443 10 7 3.3265 -2.5419 0.1150 11 6 4.0997 -3.6348 0.2710 12 8 4.3780 -4.0269 1.3847 13 6 4.6176 -4.3703 -0.9381 14 1 5.2307 -3.6974 -1.5377 15 6 3.4383 -4.8684 -1.7759 16 6 5.4501 -5.5450 -0.4931 17 1 5.5898 -5.7398 0.5600 18 6 6.0333 -6.3711 -1.4303 19 7 5.8629 -6.1342 -2.7126 20 14 7.0647 -7.8277 -0.8787 21 1 6.1950 -9.0223 -0.7309 22 1 8.1151 -8.1023 -1.8917 23 1 7.7036 -7.5163 0.4252 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8899 28 1 1.6765 1.9564 -0.8900 29 1 1.6766 1.9564 0.8900 30 1 3.1299 1.4426 0.0005 31 1 1.5707 -1.8353 5.1445 32 1 3.3430 -1.6718 5.1633 33 1 2.3156 -0.2188 5.1254 34 1 3.6575 -3.0236 2.8913 35 1 3.1037 -2.2286 -0.7756 36 1 2.8253 -5.5414 -1.1764 37 1 3.8130 -5.4000 -2.6507 38 1 2.8366 -4.0184 -2.0978 39 1 6.2735 -6.7151 -3.3720 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597607523.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:30 Heat of formation + Delta-G solvation = 25.487268 kcal Electronic energy + Delta-G solvation = -20290.976099 eV Core-core repulsion = 17234.981860 eV Total energy + Delta-G solvation = -3055.994239 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.12784 -38.67656 -35.78783 -33.97085 -33.77854 -31.88466 -30.58599 -28.63667 -27.12841 -26.32158 -25.15885 -22.95568 -22.52315 -20.92791 -19.30444 -18.69131 -17.42785 -16.24720 -15.44107 -15.36026 -15.16518 -14.61856 -14.41151 -14.20135 -14.05996 -13.41905 -13.12173 -12.87960 -12.65162 -12.60690 -12.36882 -12.09362 -11.59148 -11.32000 -11.16299 -11.02943 -11.00569 -10.77246 -10.70126 -10.38423 -10.37800 -10.06593 -9.96440 -9.00577 -8.96062 -8.66444 -8.35489 -7.23286 -6.05085 -4.08457 2.10635 2.65113 2.87291 3.32867 3.38749 3.45000 3.86382 3.91496 4.45282 4.61232 4.76997 4.97642 5.17321 5.20201 5.27554 5.29109 5.40496 5.42351 5.64054 5.76349 5.84538 5.88014 6.01219 6.04123 6.18895 6.25022 6.33061 6.56241 6.60350 6.80338 6.89659 7.13395 7.41284 7.48062 7.72977 7.87320 7.99012 8.12999 8.39647 8.99905 9.13763 9.57078 11.02576 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.025059 B = 0.004948 C = 0.004304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.102537 B = 5657.334682 C = 6504.475172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.012 4.012 3 C -0.140 4.140 4 C 0.060 3.940 5 N -0.287 5.287 6 N -0.384 5.384 7 C 0.113 3.887 8 C 0.030 3.970 9 C 0.010 3.990 10 N -0.656 5.656 11 C 0.519 3.481 12 O -0.537 6.537 13 C 0.033 3.967 14 H 0.055 0.945 15 C -0.134 4.134 16 C -0.501 4.501 17 H 0.075 0.925 18 C 0.059 3.941 19 N -0.896 5.896 20 Si 0.900 3.100 21 H -0.281 1.281 22 H -0.287 1.287 23 H -0.273 1.273 24 H 0.059 0.941 25 H 0.059 0.941 26 H 0.055 0.945 27 H 0.083 0.917 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.055 0.945 31 H 0.069 0.931 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.199 0.801 35 H 0.405 0.595 36 H 0.032 0.968 37 H 0.095 0.905 38 H 0.013 0.987 39 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.787 12.082 6.129 16.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.032 4.032 3 C -0.198 4.198 4 C -0.108 4.108 5 N -0.110 5.110 6 N -0.170 5.170 7 C -0.029 4.029 8 C -0.115 4.115 9 C -0.094 4.094 10 N -0.302 5.302 11 C 0.310 3.690 12 O -0.413 6.413 13 C 0.012 3.988 14 H 0.073 0.927 15 C -0.192 4.192 16 C -0.540 4.540 17 H 0.093 0.907 18 C -0.142 4.142 19 N -0.535 5.535 20 Si 0.728 3.272 21 H -0.207 1.207 22 H -0.213 1.213 23 H -0.198 1.198 24 H 0.078 0.922 25 H 0.078 0.922 26 H 0.074 0.926 27 H 0.101 0.899 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.074 0.926 31 H 0.088 0.912 32 H 0.104 0.896 33 H 0.102 0.898 34 H 0.216 0.784 35 H 0.241 0.759 36 H 0.051 0.949 37 H 0.113 0.887 38 H 0.032 0.968 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -9.053 12.475 7.651 17.209 hybrid contribution 0.864 -1.291 -0.651 1.684 sum -8.189 11.185 7.000 15.529 Atomic orbital electron populations 1.21796 0.93907 1.02125 1.02004 1.19524 0.96029 0.95533 0.92143 1.21798 1.01256 0.94769 1.02004 1.21968 0.99422 0.95547 0.93862 1.77016 1.19634 1.14742 0.99607 1.48251 1.40767 1.21956 1.06069 1.21713 1.03174 1.03784 0.74244 1.23129 1.01247 0.97140 0.89989 1.17792 1.05852 0.97541 0.88257 1.43502 1.51435 1.28673 1.06588 1.22164 0.75490 0.77974 0.93334 1.90366 1.57471 1.65997 1.27446 1.18867 0.95071 0.95739 0.89117 0.92706 1.21768 0.96145 0.98869 1.02401 1.21113 1.29213 1.09486 0.94157 0.90723 1.24943 0.96476 0.97953 0.94815 1.69862 1.44808 1.38845 0.99998 0.86444 0.79845 0.82439 0.78435 1.20674 1.21290 1.19764 0.92150 0.92187 0.92568 0.89901 0.92191 0.92148 0.92568 0.91250 0.89592 0.89787 0.78415 0.75945 0.94879 0.88674 0.96832 0.92912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.52 9.18 37.16 0.34 -1.18 16 2 C -0.01 -0.14 3.34 -91.77 -0.31 -0.45 16 3 C -0.14 -1.52 9.18 37.16 0.34 -1.18 16 4 C 0.06 0.95 5.73 -82.26 -0.47 0.47 16 5 N -0.29 -4.59 12.56 33.74 0.42 -4.16 16 6 N -0.38 -5.88 4.04 -67.82 -0.27 -6.15 16 7 C 0.11 1.14 11.48 59.84 0.69 1.83 16 8 C 0.03 0.54 10.38 -16.68 -0.17 0.37 16 9 C 0.01 0.18 6.90 -83.88 -0.58 -0.40 16 10 N -0.66 -12.12 5.37 -10.03 -0.05 -12.17 16 11 C 0.52 11.71 7.12 -10.98 -0.08 11.63 16 12 O -0.54 -13.32 12.62 5.53 0.07 -13.25 16 13 C 0.03 0.81 2.64 -92.92 -0.24 0.56 16 14 H 0.06 1.38 8.14 -51.93 -0.42 0.95 16 15 C -0.13 -3.02 8.87 37.16 0.33 -2.69 16 16 C -0.50 -13.93 8.37 -34.44 -0.29 -14.21 16 17 H 0.07 2.18 6.75 -52.49 -0.35 1.82 16 18 C 0.06 1.61 5.30 -17.82 -0.09 1.52 16 19 N -0.90 -24.76 11.32 55.43 0.63 -24.13 16 20 Si 0.90 21.51 29.54 -169.99 -5.02 16.49 16 21 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 22 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 23 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 24 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 26 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 27 H 0.08 0.95 7.04 -51.93 -0.37 0.58 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.20 3.76 5.85 -52.49 -0.31 3.46 16 35 H 0.41 6.41 7.15 -40.82 -0.29 6.12 16 36 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 37 H 0.09 2.36 6.07 -51.93 -0.32 2.04 16 38 H 0.01 0.24 7.57 -51.93 -0.39 -0.15 16 39 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 LS Contribution 323.54 15.07 4.88 4.88 Total: -1.00 -31.59 323.54 -5.70 -37.29 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: -5.81 Total: 4.94 kcal Atomic # 6 Polarization: -3.19 SS G_CDS: -0.54 Total: -3.73 kcal Atomic # 7 Polarization: -47.34 SS G_CDS: 0.72 Total: -46.62 kcal Atomic # 8 Polarization: -13.32 SS G_CDS: 0.07 Total: -13.25 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -31.59 -5.70 -37.29 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597607523.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.779 kcal (2) G-P(sol) polarization free energy of solvation -31.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.292 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds