Wall clock time and date at job start Mon Mar 30 2020 06:31:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53008 * 109.46770 * 2 1 4 4 C 1.50700 * 109.47704 * 119.99659 * 2 1 3 5 5 N 1.30828 * 125.83597 * 299.98343 * 4 2 1 6 6 N 1.40068 * 108.37468 * 180.02562 * 5 4 2 7 7 C 1.46494 * 126.05476 * 180.02562 * 6 5 4 8 8 C 1.35819 * 107.88838 * 359.76791 * 6 5 4 9 9 C 1.35753 * 107.56124 * 0.36833 * 8 6 5 10 10 N 1.40764 * 126.07684 * 179.90001 * 9 8 6 11 11 C 1.34774 * 119.99952 * 359.68742 * 10 9 8 12 12 O 1.21306 * 120.00390 * 0.02562 * 11 10 9 13 13 C 1.50708 * 120.00011 * 179.97438 * 11 10 9 14 14 H 1.09002 * 109.46828 * 60.00113 * 13 11 10 15 15 C 1.52997 * 109.47141 * 300.00244 * 13 11 10 16 16 C 1.50697 * 109.47025 * 179.97438 * 13 11 10 17 17 H 1.07999 * 120.00055 * 0.02562 * 16 13 11 18 18 C 1.37878 * 119.99687 * 180.02562 * 16 13 11 19 19 N 1.31511 * 120.00458 * 359.97438 * 18 16 13 20 20 Si 1.86805 * 119.99926 * 180.02562 * 18 16 13 21 21 H 1.48503 * 109.46980 * 89.99582 * 20 18 16 22 22 H 1.48493 * 109.47135 * 209.99651 * 20 18 16 23 23 H 1.48498 * 109.47274 * 330.00048 * 20 18 16 24 24 H 1.09005 * 109.46940 * 299.99789 * 1 2 3 25 25 H 1.08999 * 109.47520 * 59.99744 * 1 2 3 26 26 H 1.09001 * 109.47035 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47478 * 240.00118 * 2 1 3 28 28 H 1.09000 * 109.46924 * 300.00011 * 3 2 1 29 29 H 1.08996 * 109.47028 * 60.00397 * 3 2 1 30 30 H 1.09005 * 109.46694 * 179.97438 * 3 2 1 31 31 H 1.09004 * 109.47419 * 89.97324 * 7 6 5 32 32 H 1.09001 * 109.47167 * 209.96988 * 7 6 5 33 33 H 1.09000 * 109.47293 * 329.97032 * 7 6 5 34 34 H 1.08001 * 126.21772 * 180.22902 * 8 6 5 35 35 H 0.96998 * 119.99923 * 179.68671 * 10 9 8 36 36 H 1.09002 * 109.47153 * 299.99670 * 15 13 11 37 37 H 1.09001 * 109.46832 * 179.97438 * 15 13 11 38 38 H 1.09004 * 109.47261 * 59.99842 * 15 13 11 39 39 H 0.96999 * 120.00480 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0324 -0.7103 1.2305 5 7 1.7881 -0.3641 2.4682 6 7 2.4321 -1.2738 3.3165 7 6 2.4142 -1.2483 4.7811 8 6 3.0714 -2.1870 2.5406 9 6 2.8423 -1.8553 1.2443 10 7 3.3265 -2.5419 0.1150 11 6 4.0997 -3.6348 0.2710 12 8 4.3780 -4.0269 1.3847 13 6 4.6176 -4.3703 -0.9381 14 1 5.2307 -3.6974 -1.5377 15 6 3.4383 -4.8684 -1.7759 16 6 5.4501 -5.5450 -0.4931 17 1 5.5898 -5.7398 0.5600 18 6 6.0333 -6.3711 -1.4303 19 7 5.8629 -6.1342 -2.7126 20 14 7.0647 -7.8277 -0.8787 21 1 6.1950 -9.0223 -0.7309 22 1 8.1151 -8.1023 -1.8917 23 1 7.7036 -7.5163 0.4252 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8899 28 1 1.6765 1.9564 -0.8900 29 1 1.6766 1.9564 0.8900 30 1 3.1299 1.4426 0.0005 31 1 1.5707 -1.8353 5.1445 32 1 3.3430 -1.6718 5.1633 33 1 2.3156 -0.2188 5.1254 34 1 3.6575 -3.0236 2.8913 35 1 3.1037 -2.2286 -0.7756 36 1 2.8253 -5.5414 -1.1764 37 1 3.8130 -5.4000 -2.6507 38 1 2.8366 -4.0184 -2.0978 39 1 6.2735 -6.7151 -3.3720 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597607523.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:30 Heat of formation + Delta-G solvation = 5.459438 kcal Electronic energy + Delta-G solvation = -20291.844571 eV Core-core repulsion = 17234.981860 eV Total energy + Delta-G solvation = -3056.862711 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.42677 -40.36647 -36.82030 -35.81436 -35.44387 -33.04913 -32.43598 -30.00811 -27.96340 -27.47423 -27.15491 -24.68629 -23.59356 -22.42789 -20.75625 -20.09854 -18.77816 -18.19703 -17.18697 -16.74663 -16.57624 -16.09022 -15.70782 -15.56260 -15.32194 -14.81712 -14.51172 -14.28922 -14.11599 -13.56723 -13.48977 -13.32412 -12.96039 -12.92289 -12.69910 -12.58490 -12.34709 -12.23648 -12.05405 -12.01179 -11.94107 -11.62324 -11.50372 -11.03104 -10.59536 -10.31045 -10.15892 -8.63189 -8.13489 -6.23608 0.82230 1.41424 1.43316 1.43694 1.51702 1.55792 2.24026 2.35635 2.53613 3.16732 3.50752 3.69696 4.06976 4.14028 4.29013 4.40021 4.42762 4.51327 4.63589 4.65503 4.74518 4.78956 4.86592 4.95587 5.00029 5.01399 5.03924 5.12315 5.25960 5.40631 5.44170 5.50572 5.74523 5.82646 5.95212 6.12759 6.21490 6.58969 6.77046 6.86950 7.38963 7.49228 8.92452 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.025059 B = 0.004948 C = 0.004304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.102537 B = 5657.334682 C = 6504.475172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.017 4.017 3 C -0.135 4.135 4 C 0.066 3.934 5 N -0.293 5.293 6 N -0.381 5.381 7 C 0.101 3.899 8 C 0.020 3.980 9 C -0.019 4.019 10 N -0.637 5.637 11 C 0.520 3.480 12 O -0.568 6.568 13 C 0.030 3.970 14 H 0.046 0.954 15 C -0.122 4.122 16 C -0.527 4.527 17 H 0.052 0.948 18 C 0.021 3.979 19 N -0.910 5.910 20 Si 0.955 3.045 21 H -0.275 1.275 22 H -0.276 1.276 23 H -0.278 1.278 24 H 0.054 0.946 25 H 0.085 0.915 26 H 0.046 0.954 27 H 0.092 0.908 28 H 0.085 0.915 29 H 0.054 0.946 30 H 0.046 0.954 31 H 0.085 0.915 32 H 0.100 0.900 33 H 0.102 0.898 34 H 0.184 0.816 35 H 0.418 0.582 36 H 0.023 0.977 37 H 0.073 0.927 38 H 0.052 0.948 39 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.719 13.156 5.963 17.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.037 4.037 3 C -0.193 4.193 4 C -0.102 4.102 5 N -0.116 5.116 6 N -0.167 5.167 7 C -0.039 4.039 8 C -0.127 4.127 9 C -0.123 4.123 10 N -0.283 5.283 11 C 0.310 3.690 12 O -0.446 6.446 13 C 0.009 3.991 14 H 0.063 0.937 15 C -0.180 4.180 16 C -0.566 4.566 17 H 0.070 0.930 18 C -0.179 4.179 19 N -0.550 5.550 20 Si 0.781 3.219 21 H -0.201 1.201 22 H -0.201 1.201 23 H -0.203 1.203 24 H 0.073 0.927 25 H 0.104 0.896 26 H 0.065 0.935 27 H 0.110 0.890 28 H 0.104 0.896 29 H 0.073 0.927 30 H 0.065 0.935 31 H 0.104 0.896 32 H 0.119 0.881 33 H 0.120 0.880 34 H 0.201 0.799 35 H 0.256 0.744 36 H 0.042 0.958 37 H 0.092 0.908 38 H 0.071 0.929 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -10.017 13.592 7.488 18.470 hybrid contribution 1.123 -1.558 -0.530 1.992 sum -8.895 12.034 6.958 16.503 Atomic orbital electron populations 1.21760 0.92665 1.01821 1.03027 1.19750 0.97032 0.96133 0.90821 1.21763 1.00604 0.93880 1.03032 1.22430 0.98289 0.94591 0.94896 1.77002 1.19804 1.14949 0.99876 1.48648 1.39587 1.20841 1.07584 1.22126 1.04750 1.05493 0.71539 1.22996 1.01539 0.97408 0.90778 1.18041 1.07458 0.98857 0.87939 1.43086 1.50112 1.27374 1.07716 1.21731 0.76152 0.78893 0.92214 1.90359 1.58926 1.67208 1.28117 1.18779 0.95392 0.94899 0.90014 0.93670 1.21591 0.95648 0.99888 1.00845 1.21264 1.30744 1.11298 0.93260 0.93008 1.25571 0.97306 1.00025 0.94956 1.69940 1.45045 1.39504 1.00472 0.85597 0.78669 0.79709 0.77913 1.20083 1.20143 1.20305 0.92699 0.89608 0.93514 0.88997 0.89618 0.92679 0.93527 0.89646 0.88124 0.87976 0.79945 0.74395 0.95811 0.90821 0.92910 0.92596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.59 9.18 71.98 0.66 -1.93 16 2 C -0.02 -0.38 3.34 -11.54 -0.04 -0.42 16 3 C -0.13 -2.59 9.18 71.98 0.66 -1.93 16 4 C 0.07 1.99 5.73 43.20 0.25 2.24 16 5 N -0.29 -8.96 12.56 -47.15 -0.59 -9.56 16 6 N -0.38 -11.28 4.04 -368.48 -1.49 -12.77 16 7 C 0.10 1.88 11.48 127.77 1.47 3.35 16 8 C 0.02 0.70 10.38 83.50 0.87 1.56 16 9 C -0.02 -0.66 6.90 37.62 0.26 -0.40 16 10 N -0.64 -23.22 5.37 -304.04 -1.63 -24.85 16 11 C 0.52 23.72 7.12 87.66 0.62 24.34 16 12 O -0.57 -28.97 12.62 -3.11 -0.04 -29.01 16 13 C 0.03 1.50 2.64 -12.29 -0.03 1.47 16 14 H 0.05 2.30 8.14 -2.39 -0.02 2.28 16 15 C -0.12 -5.44 8.87 71.98 0.64 -4.80 16 16 C -0.53 -29.91 8.37 25.60 0.21 -29.70 16 17 H 0.05 3.12 6.75 -2.91 -0.02 3.10 16 18 C 0.02 1.14 5.30 84.66 0.45 1.59 16 19 N -0.91 -50.31 11.32 21.45 0.24 -50.07 16 20 Si 0.96 44.29 29.54 68.60 2.03 46.32 16 21 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 22 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 23 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 24 H 0.05 1.11 8.14 -2.38 -0.02 1.09 16 25 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 26 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 27 H 0.09 1.86 7.04 -2.39 -0.02 1.85 16 28 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 29 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.05 0.98 8.14 -2.38 -0.02 0.96 16 31 H 0.09 1.35 8.14 -2.38 -0.02 1.33 16 32 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 34 H 0.18 7.16 5.85 -2.91 -0.02 7.14 16 35 H 0.42 12.66 7.15 -92.71 -0.66 12.00 16 36 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.07 3.64 6.07 -2.39 -0.01 3.62 16 38 H 0.05 1.89 7.57 -2.38 -0.02 1.87 16 39 H 0.26 13.88 8.31 -92.71 -0.77 13.11 16 Total: -1.00 -68.18 323.54 4.92 -63.26 By element: Atomic # 1 Polarization: 20.93 SS G_CDS: 0.39 Total: 21.31 kcal Atomic # 6 Polarization: -10.65 SS G_CDS: 6.02 Total: -4.63 kcal Atomic # 7 Polarization: -93.78 SS G_CDS: -3.47 Total: -97.25 kcal Atomic # 8 Polarization: -28.97 SS G_CDS: -0.04 Total: -29.01 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.32 kcal Total: -68.18 4.92 -63.26 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597607523.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.719 kcal (2) G-P(sol) polarization free energy of solvation -68.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.260 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds