Wall clock time and date at job start Mon Mar 30 2020 08:28:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 112.90569 * 2 1 4 4 C 1.53787 * 113.61323 * 228.75197 * 2 1 3 5 5 C 1.53954 * 87.10987 * 220.08710 * 4 2 1 6 6 C 1.53779 * 113.61668 * 131.25229 * 2 1 3 7 7 H 1.09003 * 113.61294 * 25.35232 * 6 2 1 8 8 C 1.50692 * 113.61610 * 254.52945 * 6 2 1 9 9 O 1.21290 * 120.00322 * 263.72454 * 8 6 2 10 10 N 1.34772 * 120.00134 * 83.71976 * 8 6 2 11 11 C 1.46503 * 120.00416 * 179.97438 * 10 8 6 12 12 H 1.08996 * 110.01285 * 326.39426 * 11 10 8 13 13 C 1.53881 * 110.02899 * 87.83598 * 11 10 8 14 14 C 1.54265 * 106.59921 * 119.28967 * 13 11 10 15 15 C 1.54892 * 104.19556 * 23.60597 * 14 13 11 16 16 H 1.08998 * 110.75326 * 80.37799 * 15 14 13 17 17 C 1.50699 * 110.91057 * 203.67011 * 15 14 13 18 18 H 1.08005 * 119.99898 * 115.95484 * 17 15 14 19 19 C 1.37876 * 120.00469 * 295.95512 * 17 15 14 20 20 N 1.31513 * 119.99916 * 359.97438 * 19 17 15 21 21 Si 1.86795 * 120.00111 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47076 * 89.99941 * 21 19 17 23 23 H 1.48502 * 109.47129 * 209.99725 * 21 19 17 24 24 H 1.48502 * 109.47373 * 329.99808 * 21 19 17 25 25 C 1.54261 * 110.03509 * 204.99733 * 11 10 8 26 26 H 1.08997 * 109.46922 * 288.74325 * 1 2 3 27 27 H 1.08997 * 109.47342 * 48.74684 * 1 2 3 28 28 H 1.08998 * 109.46663 * 168.74860 * 1 2 3 29 29 H 1.09001 * 109.47248 * 185.32013 * 3 2 1 30 30 H 1.09002 * 109.47294 * 305.31992 * 3 2 1 31 31 H 1.09002 * 109.47152 * 65.31935 * 3 2 1 32 32 H 1.08993 * 113.61449 * 334.56749 * 4 2 1 33 33 H 1.09003 * 113.61225 * 105.38625 * 4 2 1 34 34 H 1.08999 * 113.61272 * 270.84470 * 5 4 2 35 35 H 1.08994 * 113.66529 * 139.88858 * 5 4 2 36 36 H 0.97000 * 120.00315 * 0.02562 * 10 8 6 37 37 H 1.09006 * 110.02909 * 238.56924 * 13 11 10 38 38 H 1.08999 * 110.03236 * 359.97438 * 13 11 10 39 39 H 1.09003 * 110.48223 * 264.92795 * 14 13 11 40 40 H 1.08996 * 110.48345 * 142.28597 * 14 13 11 41 41 H 0.96998 * 120.00554 * 180.02562 * 20 19 17 42 42 H 1.09007 * 110.48541 * 98.42742 * 25 11 10 43 43 H 1.08996 * 110.49032 * 335.79123 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1255 1.4093 0.0000 4 6 2.1461 -0.9291 -1.0595 5 6 3.1928 -1.3159 0.0011 6 6 2.1461 -0.9291 1.0593 7 1 1.4940 -1.7528 1.3499 8 6 2.7254 -0.1961 2.2416 9 8 3.9114 0.0553 2.2777 10 7 1.9256 0.1804 3.2590 11 6 2.4889 0.8925 4.4088 12 1 3.5028 0.5433 4.6036 13 6 2.4946 2.4075 4.1392 14 6 1.6139 3.0524 5.2293 15 6 1.6401 2.0302 6.3927 16 1 2.5566 2.1303 6.9742 17 6 0.4296 2.1896 7.2760 18 1 -0.2909 1.3888 7.3544 19 6 0.2417 3.3575 7.9842 20 7 1.1192 4.3325 7.8892 21 14 -1.2585 3.5546 9.0796 22 1 -0.9405 3.0692 10.4465 23 1 -1.6423 4.9879 9.1402 24 1 -2.3853 2.7636 8.5230 25 6 1.6048 0.6698 5.6532 26 1 -0.3633 0.3302 0.9731 27 1 -0.3634 0.6776 -0.7726 28 1 -0.3632 -1.0079 -0.2005 29 1 3.2095 1.3458 -0.0953 30 1 1.7197 1.9753 -0.8385 31 1 1.8717 1.9110 0.9338 32 1 1.4946 -1.7534 -1.3491 33 1 2.5638 -0.3988 -1.9153 34 1 4.0725 -0.6723 0.0015 35 1 3.4432 -2.3767 0.0021 36 1 0.9772 -0.0208 3.2304 37 1 3.5116 2.7944 4.2036 38 1 2.0787 2.6128 3.1528 39 1 0.5958 3.1900 4.8651 40 1 2.0379 4.0045 5.5483 41 1 0.9873 5.1541 8.3877 42 1 2.0222 -0.1170 6.2817 43 1 0.5853 0.4225 5.3576 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597716597.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:28:07 Heat of formation + Delta-G solvation = -48.040789 kcal Electronic energy + Delta-G solvation = -20885.582354 eV Core-core repulsion = 17929.940043 eV Total energy + Delta-G solvation = -2955.642312 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.70556 -38.37698 -36.72645 -33.58997 -31.93987 -30.80401 -28.22955 -27.79447 -27.53979 -25.98510 -23.78968 -22.57987 -20.77986 -19.68605 -19.08740 -18.22993 -16.99420 -16.55623 -15.52910 -15.24198 -14.93174 -14.61138 -14.30101 -14.08777 -13.52376 -13.29665 -12.90603 -12.62140 -12.36583 -12.28553 -12.09502 -11.82611 -11.60180 -11.41385 -11.11551 -10.98768 -10.92809 -10.87488 -10.58608 -10.48647 -10.29483 -10.18138 -9.93374 -9.53245 -9.35474 -9.15202 -8.81641 -8.53561 -8.36712 -6.01089 -4.04501 2.89768 3.29830 3.36940 3.39073 3.57095 4.29116 4.41796 4.43563 4.58352 4.64307 5.05327 5.20789 5.30954 5.35365 5.44886 5.49076 5.57338 5.60979 5.66971 5.68799 5.76336 5.83821 5.86546 5.88936 5.96604 6.10525 6.25014 6.33452 6.38601 6.40469 6.61780 6.68663 6.76615 6.92132 6.96746 7.27523 7.33535 7.70695 7.86836 7.91194 8.02438 8.42751 8.58003 8.97843 9.59714 11.08360 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.033659 B = 0.004197 C = 0.004065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.671126 B = 6669.488598 C = 6886.161638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.067 4.067 3 C -0.135 4.135 4 C -0.134 4.134 5 C -0.117 4.117 6 C -0.134 4.134 7 H 0.108 0.892 8 C 0.522 3.478 9 O -0.548 6.548 10 N -0.717 5.717 11 C 0.137 3.863 12 H 0.078 0.922 13 C -0.133 4.133 14 C -0.101 4.101 15 C 0.052 3.948 16 H 0.033 0.967 17 C -0.514 4.514 18 H 0.055 0.945 19 C 0.063 3.937 20 N -0.888 5.888 21 Si 0.889 3.111 22 H -0.281 1.281 23 H -0.287 1.287 24 H -0.275 1.275 25 C -0.121 4.121 26 H 0.060 0.940 27 H 0.058 0.942 28 H 0.057 0.943 29 H 0.063 0.937 30 H 0.059 0.941 31 H 0.062 0.938 32 H 0.081 0.919 33 H 0.070 0.930 34 H 0.094 0.906 35 H 0.069 0.931 36 H 0.396 0.604 37 H 0.054 0.946 38 H 0.049 0.951 39 H 0.046 0.954 40 H 0.067 0.933 41 H 0.260 0.740 42 H 0.052 0.948 43 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.582 -9.209 -16.215 18.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.068 4.068 3 C -0.192 4.192 4 C -0.171 4.171 5 C -0.154 4.154 6 C -0.155 4.155 7 H 0.126 0.874 8 C 0.308 3.692 9 O -0.426 6.426 10 N -0.367 5.367 11 C 0.033 3.967 12 H 0.097 0.903 13 C -0.172 4.172 14 C -0.139 4.139 15 C 0.033 3.967 16 H 0.051 0.949 17 C -0.553 4.553 18 H 0.073 0.927 19 C -0.139 4.139 20 N -0.527 5.527 21 Si 0.717 3.283 22 H -0.207 1.207 23 H -0.213 1.213 24 H -0.200 1.200 25 C -0.159 4.159 26 H 0.079 0.921 27 H 0.077 0.923 28 H 0.076 0.924 29 H 0.082 0.918 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.100 0.900 33 H 0.089 0.911 34 H 0.113 0.887 35 H 0.087 0.913 36 H 0.230 0.770 37 H 0.073 0.927 38 H 0.067 0.933 39 H 0.065 0.935 40 H 0.085 0.915 41 H 0.069 0.931 42 H 0.071 0.929 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.316 -8.835 -16.104 18.371 hybrid contribution -1.344 0.101 0.701 1.520 sum -1.028 -8.734 -15.403 17.737 Atomic orbital electron populations 1.21789 0.93724 1.01802 1.02337 1.21723 0.95288 0.94849 0.94904 1.21666 1.01178 0.94037 1.02317 1.23059 0.98262 0.99004 0.96783 1.22776 0.97195 1.01751 0.93723 1.22967 1.00067 0.99475 0.93018 0.87409 1.20354 0.86705 0.78918 0.83259 1.90656 1.15944 1.56503 1.79450 1.46373 1.11610 1.58407 1.20297 1.21846 0.98010 0.91988 0.84814 0.90344 1.22638 1.00495 0.94550 0.99498 1.22309 0.97037 1.00293 0.94261 1.19546 0.97343 0.87625 0.92197 0.94888 1.21093 1.07357 1.00699 1.26120 0.92682 1.24973 0.96285 0.96028 0.96569 1.69959 1.35144 1.05666 1.41900 0.86648 0.83366 0.77198 0.81077 1.20732 1.21298 1.19979 1.22755 0.97715 1.01070 0.94391 0.92130 0.92258 0.92403 0.91838 0.92191 0.91878 0.90030 0.91117 0.88710 0.91274 0.77020 0.92721 0.93266 0.93550 0.91474 0.93059 0.92944 0.92174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.21 9.19 37.16 0.34 -0.87 16 2 C -0.07 -0.67 1.31 -153.69 -0.20 -0.87 16 3 C -0.13 -1.56 8.09 37.16 0.30 -1.25 16 4 C -0.13 -1.16 7.22 -25.82 -0.19 -1.35 16 5 C -0.12 -1.24 7.08 -25.82 -0.18 -1.42 16 6 C -0.13 -1.51 3.66 -90.96 -0.33 -1.84 16 7 H 0.11 1.03 8.10 -51.93 -0.42 0.61 16 8 C 0.52 7.94 5.86 -10.99 -0.06 7.87 16 9 O -0.55 -10.36 15.55 5.55 0.09 -10.28 16 10 N -0.72 -10.90 4.98 -52.72 -0.26 -11.17 16 11 C 0.14 2.52 3.25 -66.81 -0.22 2.30 16 12 H 0.08 1.54 7.56 -51.93 -0.39 1.15 16 13 C -0.13 -2.61 6.59 -25.61 -0.17 -2.78 16 14 C -0.10 -2.31 5.67 -25.07 -0.14 -2.46 16 15 C 0.05 1.26 2.76 -89.78 -0.25 1.01 16 16 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 17 C -0.51 -13.80 8.53 -34.44 -0.29 -14.10 16 18 H 0.05 1.45 7.78 -52.48 -0.41 1.04 16 19 C 0.06 1.73 5.35 -17.82 -0.10 1.64 16 20 N -0.89 -25.33 12.22 55.43 0.68 -24.65 16 21 Si 0.89 21.00 29.54 -169.99 -5.02 15.98 16 22 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 23 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 24 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 25 C -0.12 -2.40 5.94 -25.08 -0.15 -2.55 16 26 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 27 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.43 7.94 -51.93 -0.41 0.02 16 29 H 0.06 0.80 7.32 -51.93 -0.38 0.42 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.06 0.84 7.46 -51.93 -0.39 0.45 16 32 H 0.08 0.60 7.96 -51.93 -0.41 0.19 16 33 H 0.07 0.58 8.10 -51.93 -0.42 0.16 16 34 H 0.09 1.18 6.89 -51.93 -0.36 0.82 16 35 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.40 5.17 8.36 -40.82 -0.34 4.83 16 37 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 38 H 0.05 0.91 7.68 -51.93 -0.40 0.51 16 39 H 0.05 1.09 8.05 -51.93 -0.42 0.67 16 40 H 0.07 1.70 7.51 -51.93 -0.39 1.31 16 41 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 42 H 0.05 1.01 8.14 -51.92 -0.42 0.58 16 43 H 0.06 1.14 7.64 -51.93 -0.40 0.75 16 LS Contribution 337.75 15.07 5.09 5.09 Total: -1.00 -29.59 337.75 -8.70 -38.29 By element: Atomic # 1 Polarization: 11.05 SS G_CDS: -7.63 Total: 3.42 kcal Atomic # 6 Polarization: -15.04 SS G_CDS: -1.64 Total: -16.68 kcal Atomic # 7 Polarization: -36.24 SS G_CDS: 0.41 Total: -35.82 kcal Atomic # 8 Polarization: -10.36 SS G_CDS: 0.09 Total: -10.28 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -29.59 -8.70 -38.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597716597.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.753 kcal (2) G-P(sol) polarization free energy of solvation -29.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds